Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07880

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07880 and AZOBR_RS07885 are separated by 92 nucleotides AZOBR_RS07880: AZOBR_RS07880 - conserved exported protein of unknown function, at 1,660,793 to 1,660,999 _RS07880 AZOBR_RS07885: AZOBR_RS07885 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,661,092 to 1,662,393 _RS07885 Position (kb) 1660 1661Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1659.897 kb on + strandat 1659.898 kb on - strandat 1659.898 kb on - strandat 1659.898 kb on - strandat 1659.993 kb on + strandat 1659.994 kb on - strandat 1659.994 kb on - strandat 1660.159 kb on + strandat 1660.159 kb on + strandat 1660.160 kb on - strandat 1660.160 kb on - strandat 1660.333 kb on + strandat 1660.334 kb on - strandat 1660.334 kb on - strandat 1660.361 kb on - strandat 1660.728 kb on - strandat 1661.093 kb on + strandat 1661.300 kb on + strand, within AZOBR_RS07885at 1661.301 kb on - strand, within AZOBR_RS07885at 1661.372 kb on + strand, within AZOBR_RS07885at 1661.372 kb on + strand, within AZOBR_RS07885at 1661.372 kb on + strand, within AZOBR_RS07885at 1661.372 kb on + strand, within AZOBR_RS07885at 1661.372 kb on + strand, within AZOBR_RS07885at 1661.372 kb on + strand, within AZOBR_RS07885at 1661.372 kb on + strand, within AZOBR_RS07885at 1661.372 kb on + strand, within AZOBR_RS07885at 1661.373 kb on - strand, within AZOBR_RS07885at 1661.373 kb on - strand, within AZOBR_RS07885at 1661.705 kb on + strand, within AZOBR_RS07885at 1661.705 kb on + strand, within AZOBR_RS07885at 1661.705 kb on + strand, within AZOBR_RS07885at 1661.705 kb on + strand, within AZOBR_RS07885at 1661.705 kb on + strand, within AZOBR_RS07885at 1661.705 kb on + strand, within AZOBR_RS07885at 1661.705 kb on + strand, within AZOBR_RS07885at 1661.706 kb on - strand, within AZOBR_RS07885at 1661.706 kb on - strand, within AZOBR_RS07885at 1661.706 kb on - strand, within AZOBR_RS07885at 1661.706 kb on - strand, within AZOBR_RS07885at 1661.706 kb on - strand, within AZOBR_RS07885at 1661.706 kb on - strand, within AZOBR_RS07885at 1661.750 kb on + strand, within AZOBR_RS07885at 1661.750 kb on + strand, within AZOBR_RS07885at 1661.750 kb on + strand, within AZOBR_RS07885at 1661.751 kb on - strand, within AZOBR_RS07885at 1661.751 kb on - strand, within AZOBR_RS07885at 1661.751 kb on - strand, within AZOBR_RS07885at 1661.885 kb on + strand, within AZOBR_RS07885at 1661.886 kb on - strand, within AZOBR_RS07885

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,659,897 + -1.0
1,659,898 - +0.4
1,659,898 - -0.1
1,659,898 - +0.1
1,659,993 + +0.1
1,659,994 - -0.5
1,659,994 - +1.0
1,660,159 + +1.0
1,660,159 + +0.4
1,660,160 - +1.8
1,660,160 - -0.0
1,660,333 + +0.2
1,660,334 - +0.4
1,660,334 - -1.2
1,660,361 - +0.5
1,660,728 - +0.6
1,661,093 + +0.6
1,661,300 + AZOBR_RS07885 0.16 -0.7
1,661,301 - AZOBR_RS07885 0.16 +1.2
1,661,372 + AZOBR_RS07885 0.22 -0.3
1,661,372 + AZOBR_RS07885 0.22 -0.6
1,661,372 + AZOBR_RS07885 0.22 -2.1
1,661,372 + AZOBR_RS07885 0.22 +0.9
1,661,372 + AZOBR_RS07885 0.22 +0.3
1,661,372 + AZOBR_RS07885 0.22 +0.1
1,661,372 + AZOBR_RS07885 0.22 -0.4
1,661,372 + AZOBR_RS07885 0.22 -0.6
1,661,373 - AZOBR_RS07885 0.22 -0.6
1,661,373 - AZOBR_RS07885 0.22 +0.4
1,661,705 + AZOBR_RS07885 0.47 -0.2
1,661,705 + AZOBR_RS07885 0.47 -0.0
1,661,705 + AZOBR_RS07885 0.47 +0.3
1,661,705 + AZOBR_RS07885 0.47 -0.3
1,661,705 + AZOBR_RS07885 0.47 +0.2
1,661,705 + AZOBR_RS07885 0.47 -0.9
1,661,705 + AZOBR_RS07885 0.47 -0.6
1,661,706 - AZOBR_RS07885 0.47 +1.3
1,661,706 - AZOBR_RS07885 0.47 +1.7
1,661,706 - AZOBR_RS07885 0.47 -0.3
1,661,706 - AZOBR_RS07885 0.47 +2.8
1,661,706 - AZOBR_RS07885 0.47 -0.0
1,661,706 - AZOBR_RS07885 0.47 +0.8
1,661,750 + AZOBR_RS07885 0.51 +0.0
1,661,750 + AZOBR_RS07885 0.51 -0.2
1,661,750 + AZOBR_RS07885 0.51 -0.1
1,661,751 - AZOBR_RS07885 0.51 +0.2
1,661,751 - AZOBR_RS07885 0.51 -1.1
1,661,751 - AZOBR_RS07885 0.51 +0.1
1,661,885 + AZOBR_RS07885 0.61 -0.2
1,661,886 - AZOBR_RS07885 0.61 -0.0

Or see this region's nucleotide sequence