Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2766

Experiment: MoYLS4 with A22 0.043 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntvalS and DvMF_2766 are separated by 383 nucleotidesDvMF_2766 and DvMF_2767 are separated by 93 nucleotides DvMF_2765: valS - valyl-tRNA synthetase (RefSeq), at 3,497,253 to 3,499,904 valS DvMF_2766: DvMF_2766 - hypothetical protein (RefSeq), at 3,500,288 to 3,500,746 _2766 DvMF_2767: DvMF_2767 - uroporphyrin-III C-methyltransferase (RefSeq), at 3,500,840 to 3,502,351 _2767 Position (kb) 3500 3501Strain fitness (log2 ratio) -1 0 1at 3500.333 kb on + strandat 3500.426 kb on - strand, within DvMF_2766at 3500.564 kb on + strand, within DvMF_2766at 3500.683 kb on + strand, within DvMF_2766at 3500.686 kb on - strand, within DvMF_2766

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.043 mg/ml
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3,500,333 + -0.5
3,500,426 - DvMF_2766 0.30 -0.5
3,500,564 + DvMF_2766 0.60 -0.0
3,500,683 + DvMF_2766 0.86 -0.4
3,500,686 - DvMF_2766 0.87 -1.3

Or see this region's nucleotide sequence