Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2545
Experiment: MoYLS4 with A22 0.043 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with A22 0.043 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,215,898 | + | DvMF_2544 | 0.61 | -0.1 | |
3,215,908 | + | DvMF_2544 | 0.61 | +0.0 | |
3,216,155 | + | DvMF_2544 | 0.77 | -0.1 | |
3,216,159 | - | DvMF_2544 | 0.77 | +0.0 | |
3,216,160 | + | DvMF_2544 | 0.78 | -0.2 | |
3,216,204 | - | DvMF_2544 | 0.80 | +1.2 | |
3,216,213 | + | DvMF_2544 | 0.81 | +0.4 | |
3,216,218 | + | DvMF_2544 | 0.81 | +0.1 | |
3,216,221 | - | DvMF_2544 | 0.81 | +0.6 | |
3,216,221 | - | DvMF_2544 | 0.81 | -0.7 | |
3,216,226 | - | DvMF_2544 | 0.82 | -0.1 | |
3,216,261 | + | DvMF_2544 | 0.84 | -0.8 | |
3,216,358 | + | -0.0 | |||
3,216,358 | + | +0.9 | |||
3,216,402 | - | -0.2 | |||
3,216,446 | - | -0.3 | |||
3,216,565 | + | -0.5 | |||
3,216,668 | + | -0.2 | |||
3,216,874 | - | +0.5 | |||
3,216,907 | + | -0.1 | |||
3,216,930 | - | DvMF_2545 | 0.11 | -0.4 | |
3,217,027 | + | DvMF_2545 | 0.23 | -1.3 | |
3,217,103 | + | DvMF_2545 | 0.32 | -0.4 | |
3,217,120 | + | DvMF_2545 | 0.34 | -0.6 | |
3,217,120 | + | DvMF_2545 | 0.34 | -0.1 | |
3,217,888 | - | -0.0 | |||
3,217,969 | + | DvMF_2546 | 0.10 | +0.2 | |
3,217,987 | - | DvMF_2546 | 0.14 | +0.3 | |
3,218,227 | + | DvMF_2546 | 0.66 | +0.2 | |
3,218,303 | + | DvMF_2546 | 0.83 | -0.5 | |
3,218,338 | - | -0.1 |
Or see this region's nucleotide sequence