Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2066

Experiment: MoYLS4 with A22 0.043 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2064 and DvMF_2065 are separated by 227 nucleotidesDvMF_2065 and DvMF_2066 are separated by 109 nucleotidesDvMF_2066 and DvMF_2067 are separated by 543 nucleotides DvMF_2064: DvMF_2064 - hypothetical protein (RefSeq), at 2,559,794 to 2,560,255 _2064 DvMF_2065: DvMF_2065 - ybaK/ebsC protein (RefSeq), at 2,560,483 to 2,560,947 _2065 DvMF_2066: DvMF_2066 - heavy metal translocating P-type ATPase (RefSeq), at 2,561,057 to 2,563,573 _2066 DvMF_2067: DvMF_2067 - hypothetical protein (RefSeq), at 2,564,117 to 2,565,424 _2067 Position (kb) 2561 2562 2563 2564Strain fitness (log2 ratio) -1 0 1at 2560.352 kb on - strandat 2560.401 kb on - strandat 2560.512 kb on + strandat 2560.608 kb on - strand, within DvMF_2065at 2560.809 kb on + strand, within DvMF_2065at 2560.898 kb on - strand, within DvMF_2065at 2561.054 kb on + strandat 2561.142 kb on - strandat 2561.142 kb on - strandat 2561.172 kb on - strandat 2561.346 kb on + strand, within DvMF_2066at 2561.468 kb on + strand, within DvMF_2066at 2561.561 kb on + strand, within DvMF_2066at 2561.717 kb on - strand, within DvMF_2066at 2562.057 kb on + strand, within DvMF_2066at 2562.120 kb on + strand, within DvMF_2066at 2562.144 kb on + strand, within DvMF_2066at 2562.200 kb on + strand, within DvMF_2066at 2562.618 kb on + strand, within DvMF_2066at 2562.748 kb on - strand, within DvMF_2066at 2562.920 kb on + strand, within DvMF_2066at 2563.224 kb on - strand, within DvMF_2066at 2563.261 kb on - strand, within DvMF_2066at 2563.342 kb on + strandat 2563.434 kb on - strandat 2563.436 kb on + strandat 2563.814 kb on + strandat 2564.109 kb on - strandat 2564.176 kb on - strandat 2564.296 kb on + strand, within DvMF_2067at 2564.303 kb on + strand, within DvMF_2067at 2564.311 kb on - strand, within DvMF_2067at 2564.312 kb on - strand, within DvMF_2067at 2564.414 kb on + strand, within DvMF_2067

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.043 mg/ml
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2,560,352 - +0.3
2,560,401 - -0.2
2,560,512 + -0.6
2,560,608 - DvMF_2065 0.27 -0.7
2,560,809 + DvMF_2065 0.70 -0.5
2,560,898 - DvMF_2065 0.89 -0.3
2,561,054 + -1.6
2,561,142 - -1.0
2,561,142 - -0.5
2,561,172 - -0.8
2,561,346 + DvMF_2066 0.11 -0.8
2,561,468 + DvMF_2066 0.16 -1.1
2,561,561 + DvMF_2066 0.20 -1.2
2,561,717 - DvMF_2066 0.26 -0.6
2,562,057 + DvMF_2066 0.40 -0.0
2,562,120 + DvMF_2066 0.42 -0.6
2,562,144 + DvMF_2066 0.43 -0.8
2,562,200 + DvMF_2066 0.45 -0.8
2,562,618 + DvMF_2066 0.62 -1.0
2,562,748 - DvMF_2066 0.67 -1.1
2,562,920 + DvMF_2066 0.74 -0.7
2,563,224 - DvMF_2066 0.86 -0.1
2,563,261 - DvMF_2066 0.88 -0.4
2,563,342 + -0.7
2,563,434 - -1.1
2,563,436 + -0.8
2,563,814 + -0.8
2,564,109 - -0.3
2,564,176 - +0.3
2,564,296 + DvMF_2067 0.14 +0.1
2,564,303 + DvMF_2067 0.14 -0.6
2,564,311 - DvMF_2067 0.15 -0.2
2,564,312 - DvMF_2067 0.15 -0.1
2,564,414 + DvMF_2067 0.23 -0.1

Or see this region's nucleotide sequence