Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1658

Experiment: MoYLS4 with A22 0.043 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1657 and DvMF_1658 overlap by 1 nucleotidesDvMF_1658 and DvMF_1659 overlap by 8 nucleotidesDvMF_1659 and DvMF_1660 are separated by 72 nucleotides DvMF_1657: DvMF_1657 - phage portal protein, HK97 family (RefSeq), at 2,033,742 to 2,034,968 _1657 DvMF_1658: DvMF_1658 - Terminase (RefSeq), at 2,034,968 to 2,036,665 _1658 DvMF_1659: DvMF_1659 - putative phage terminase, small subunit, P27 family (RefSeq), at 2,036,658 to 2,037,131 _1659 DvMF_1660: DvMF_1660 - HNH endonuclease (RefSeq), at 2,037,204 to 2,037,599 _1660 Position (kb) 2034 2035 2036 2037Strain fitness (log2 ratio) -2 -1 0 1at 2033.977 kb on - strand, within DvMF_1657at 2034.028 kb on + strand, within DvMF_1657at 2034.043 kb on - strand, within DvMF_1657at 2034.043 kb on - strand, within DvMF_1657at 2034.049 kb on - strand, within DvMF_1657at 2034.088 kb on + strand, within DvMF_1657at 2034.168 kb on + strand, within DvMF_1657at 2034.452 kb on - strand, within DvMF_1657at 2034.480 kb on - strand, within DvMF_1657at 2034.600 kb on + strand, within DvMF_1657at 2034.692 kb on + strand, within DvMF_1657at 2034.977 kb on - strandat 2035.075 kb on + strandat 2035.309 kb on + strand, within DvMF_1658at 2035.521 kb on + strand, within DvMF_1658at 2035.720 kb on - strand, within DvMF_1658at 2036.413 kb on + strand, within DvMF_1658at 2036.572 kb on - strandat 2036.635 kb on - strandat 2036.803 kb on + strand, within DvMF_1659at 2036.821 kb on + strand, within DvMF_1659at 2036.821 kb on + strand, within DvMF_1659at 2036.976 kb on - strand, within DvMF_1659at 2036.976 kb on - strand, within DvMF_1659at 2037.100 kb on - strandat 2037.201 kb on + strandat 2037.254 kb on - strand, within DvMF_1660at 2037.285 kb on - strand, within DvMF_1660at 2037.526 kb on - strand, within DvMF_1660at 2037.600 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.043 mg/ml
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2,033,977 - DvMF_1657 0.19 -0.5
2,034,028 + DvMF_1657 0.23 -0.4
2,034,043 - DvMF_1657 0.25 -0.4
2,034,043 - DvMF_1657 0.25 -1.7
2,034,049 - DvMF_1657 0.25 -0.8
2,034,088 + DvMF_1657 0.28 -0.6
2,034,168 + DvMF_1657 0.35 -0.1
2,034,452 - DvMF_1657 0.58 -0.3
2,034,480 - DvMF_1657 0.60 -0.3
2,034,600 + DvMF_1657 0.70 -0.7
2,034,692 + DvMF_1657 0.77 -0.6
2,034,977 - -2.2
2,035,075 + -1.0
2,035,309 + DvMF_1658 0.20 -0.8
2,035,521 + DvMF_1658 0.33 -0.4
2,035,720 - DvMF_1658 0.44 -0.3
2,036,413 + DvMF_1658 0.85 +0.0
2,036,572 - -0.2
2,036,635 - -0.6
2,036,803 + DvMF_1659 0.31 -0.7
2,036,821 + DvMF_1659 0.34 +1.1
2,036,821 + DvMF_1659 0.34 -0.6
2,036,976 - DvMF_1659 0.67 -0.6
2,036,976 - DvMF_1659 0.67 -0.2
2,037,100 - +0.4
2,037,201 + -1.4
2,037,254 - DvMF_1660 0.13 -1.5
2,037,285 - DvMF_1660 0.20 -1.1
2,037,526 - DvMF_1660 0.81 -0.2
2,037,600 - -0.3

Or see this region's nucleotide sequence