Experiment: MoYLS4 with A22 0.043 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1528 and DvMF_1529 are separated by 72 nucleotides DvMF_1529 and DvMF_1530 are separated by 371 nucleotides DvMF_1530 and DvMF_1531 are separated by 422 nucleotides DvMF_1531 and DvMF_1532 are separated by 221 nucleotides
DvMF_1528: DvMF_1528 - phospholipase D/Transphosphatidylase (RefSeq), at 1,883,223 to 1,884,692
_1528
DvMF_1529: DvMF_1529 - UspA domain protein (RefSeq), at 1,884,765 to 1,885,190
_1529
DvMF_1530: DvMF_1530 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 1,885,562 to 1,888,252
_1530
DvMF_1531: DvMF_1531 - hypothetical protein (RefSeq), at 1,888,675 to 1,888,866
_1531
DvMF_1532: DvMF_1532 - carboxynorspermidine decarboxylase (RefSeq), at 1,889,088 to 1,890,305
_1532
Position (kb)
1885
1886
1887
1888
1889 Strain fitness (log2 ratio)
-2
-1
0
1 at 1884.562 kb on - strand at 1884.634 kb on - strand at 1884.719 kb on - strand at 1884.918 kb on - strand, within DvMF_1529 at 1884.951 kb on - strand, within DvMF_1529 at 1885.028 kb on - strand, within DvMF_1529 at 1885.209 kb on - strand at 1885.211 kb on - strand at 1885.335 kb on + strand at 1885.901 kb on + strand, within DvMF_1530 at 1886.160 kb on + strand, within DvMF_1530 at 1886.192 kb on - strand, within DvMF_1530 at 1886.419 kb on - strand, within DvMF_1530 at 1886.444 kb on - strand, within DvMF_1530 at 1886.701 kb on + strand, within DvMF_1530 at 1886.869 kb on + strand, within DvMF_1530 at 1887.022 kb on + strand, within DvMF_1530 at 1887.065 kb on - strand, within DvMF_1530 at 1887.743 kb on + strand, within DvMF_1530 at 1887.953 kb on + strand, within DvMF_1530 at 1888.073 kb on - strand at 1888.332 kb on - strand at 1888.446 kb on - strand at 1888.478 kb on + strand at 1888.500 kb on - strand at 1888.500 kb on - strand at 1888.638 kb on - strand at 1888.680 kb on - strand at 1888.754 kb on - strand, within DvMF_1531 at 1889.009 kb on + strand at 1889.041 kb on - strand at 1889.079 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.043 mg/ml remove 1,884,562 - -0.9 1,884,634 - -0.8 1,884,719 - -0.5 1,884,918 - DvMF_1529 0.36 -0.1 1,884,951 - DvMF_1529 0.44 -0.2 1,885,028 - DvMF_1529 0.62 -0.1 1,885,209 - -1.8 1,885,211 - -0.3 1,885,335 + -1.0 1,885,901 + DvMF_1530 0.13 -0.1 1,886,160 + DvMF_1530 0.22 -0.1 1,886,192 - DvMF_1530 0.23 -0.3 1,886,419 - DvMF_1530 0.32 -0.2 1,886,444 - DvMF_1530 0.33 -0.0 1,886,701 + DvMF_1530 0.42 +1.0 1,886,869 + DvMF_1530 0.49 -0.3 1,887,022 + DvMF_1530 0.54 +0.0 1,887,065 - DvMF_1530 0.56 -0.2 1,887,743 + DvMF_1530 0.81 -0.3 1,887,953 + DvMF_1530 0.89 -0.0 1,888,073 - -0.3 1,888,332 - -0.3 1,888,446 - -0.7 1,888,478 + -0.5 1,888,500 - -0.2 1,888,500 - -0.2 1,888,638 - -0.4 1,888,680 - -0.2 1,888,754 - DvMF_1531 0.41 -0.6 1,889,009 + +0.1 1,889,041 - -0.4 1,889,079 - -0.3
Or see this region's nucleotide sequence