Experiment: MoYLS4 with A22 0.043 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1216 and DvMF_1217 are separated by 2 nucleotides DvMF_1217 and DvMF_1218 are separated by 74 nucleotides DvMF_1218 and DvMF_1219 are separated by 603 nucleotides
DvMF_1216: DvMF_1216 - formate dehydrogenase, beta subunit, putative (RefSeq), at 1,497,326 to 1,498,033
_1216
DvMF_1217: DvMF_1217 - formate dehydrogenase, alpha subunit (RefSeq), at 1,498,036 to 1,501,062
_1217
DvMF_1218: DvMF_1218 - hypothetical protein (RefSeq), at 1,501,137 to 1,501,373
_1218
DvMF_1219: DvMF_1219 - transposase, putative (RefSeq), at 1,501,977 to 1,502,900
_1219
Position (kb)
1498
1499
1500
1501
1502 Strain fitness (log2 ratio)
-1
0
1 at 1497.152 kb on + strand at 1497.326 kb on - strand at 1497.326 kb on - strand at 1497.444 kb on - strand, within DvMF_1216 at 1497.559 kb on + strand, within DvMF_1216 at 1497.820 kb on + strand, within DvMF_1216 at 1498.325 kb on - strand at 1498.706 kb on + strand, within DvMF_1217 at 1498.839 kb on + strand, within DvMF_1217 at 1498.943 kb on + strand, within DvMF_1217 at 1498.951 kb on - strand, within DvMF_1217 at 1498.951 kb on - strand, within DvMF_1217 at 1498.951 kb on - strand, within DvMF_1217 at 1498.962 kb on + strand, within DvMF_1217 at 1499.323 kb on + strand, within DvMF_1217 at 1499.353 kb on + strand, within DvMF_1217 at 1499.417 kb on + strand, within DvMF_1217 at 1499.417 kb on + strand, within DvMF_1217 at 1499.493 kb on + strand, within DvMF_1217 at 1499.602 kb on + strand, within DvMF_1217 at 1499.674 kb on + strand, within DvMF_1217 at 1499.769 kb on + strand, within DvMF_1217 at 1499.963 kb on + strand, within DvMF_1217 at 1500.002 kb on + strand, within DvMF_1217 at 1500.010 kb on - strand, within DvMF_1217 at 1500.178 kb on - strand, within DvMF_1217 at 1500.188 kb on - strand, within DvMF_1217 at 1500.323 kb on + strand, within DvMF_1217 at 1500.401 kb on + strand, within DvMF_1217 at 1500.411 kb on + strand, within DvMF_1217 at 1500.744 kb on - strand, within DvMF_1217 at 1500.896 kb on - strand at 1500.938 kb on - strand at 1501.534 kb on - strand at 1501.725 kb on - strand at 1501.853 kb on + strand at 1501.853 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.043 mg/ml remove 1,497,152 + -0.3 1,497,326 - -0.4 1,497,326 - -0.1 1,497,444 - DvMF_1216 0.17 +0.3 1,497,559 + DvMF_1216 0.33 -0.0 1,497,820 + DvMF_1216 0.70 +0.1 1,498,325 - +0.1 1,498,706 + DvMF_1217 0.22 -0.1 1,498,839 + DvMF_1217 0.27 -0.5 1,498,943 + DvMF_1217 0.30 -0.4 1,498,951 - DvMF_1217 0.30 -0.3 1,498,951 - DvMF_1217 0.30 -0.6 1,498,951 - DvMF_1217 0.30 -0.2 1,498,962 + DvMF_1217 0.31 -0.4 1,499,323 + DvMF_1217 0.43 +0.6 1,499,353 + DvMF_1217 0.44 -0.8 1,499,417 + DvMF_1217 0.46 -0.1 1,499,417 + DvMF_1217 0.46 +0.2 1,499,493 + DvMF_1217 0.48 -0.1 1,499,602 + DvMF_1217 0.52 +0.4 1,499,674 + DvMF_1217 0.54 +0.1 1,499,769 + DvMF_1217 0.57 -0.3 1,499,963 + DvMF_1217 0.64 +0.1 1,500,002 + DvMF_1217 0.65 -0.0 1,500,010 - DvMF_1217 0.65 +0.1 1,500,178 - DvMF_1217 0.71 +0.5 1,500,188 - DvMF_1217 0.71 -0.3 1,500,323 + DvMF_1217 0.76 +0.3 1,500,401 + DvMF_1217 0.78 -0.3 1,500,411 + DvMF_1217 0.78 -0.1 1,500,744 - DvMF_1217 0.89 +0.5 1,500,896 - -0.0 1,500,938 - +0.2 1,501,534 - -0.9 1,501,725 - +0.0 1,501,853 + -1.1 1,501,853 + -0.6
Or see this region's nucleotide sequence