Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1216

Experiment: MoYLS4 with A22 0.043 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1215 and DvMF_1216 are separated by 374 nucleotidesDvMF_1216 and DvMF_1217 are separated by 2 nucleotides DvMF_1215: DvMF_1215 - molybdopterin-guanine dinucleotide biosynthesis protein B (RefSeq), at 1,496,241 to 1,496,951 _1215 DvMF_1216: DvMF_1216 - formate dehydrogenase, beta subunit, putative (RefSeq), at 1,497,326 to 1,498,033 _1216 DvMF_1217: DvMF_1217 - formate dehydrogenase, alpha subunit (RefSeq), at 1,498,036 to 1,501,062 _1217 Position (kb) 1497 1498 1499Strain fitness (log2 ratio) -1 0 1at 1496.452 kb on - strand, within DvMF_1215at 1496.454 kb on + strand, within DvMF_1215at 1496.509 kb on + strand, within DvMF_1215at 1496.515 kb on - strand, within DvMF_1215at 1496.636 kb on + strand, within DvMF_1215at 1496.737 kb on + strand, within DvMF_1215at 1496.745 kb on - strand, within DvMF_1215at 1496.745 kb on - strand, within DvMF_1215at 1496.777 kb on - strand, within DvMF_1215at 1496.835 kb on - strand, within DvMF_1215at 1497.152 kb on + strandat 1497.326 kb on - strandat 1497.326 kb on - strandat 1497.444 kb on - strand, within DvMF_1216at 1497.559 kb on + strand, within DvMF_1216at 1497.820 kb on + strand, within DvMF_1216at 1498.325 kb on - strandat 1498.706 kb on + strand, within DvMF_1217at 1498.839 kb on + strand, within DvMF_1217at 1498.943 kb on + strand, within DvMF_1217at 1498.951 kb on - strand, within DvMF_1217at 1498.951 kb on - strand, within DvMF_1217at 1498.951 kb on - strand, within DvMF_1217at 1498.962 kb on + strand, within DvMF_1217

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.043 mg/ml
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1,496,452 - DvMF_1215 0.30 -0.1
1,496,454 + DvMF_1215 0.30 +0.4
1,496,509 + DvMF_1215 0.38 +0.0
1,496,515 - DvMF_1215 0.39 +0.0
1,496,636 + DvMF_1215 0.56 -0.2
1,496,737 + DvMF_1215 0.70 +0.0
1,496,745 - DvMF_1215 0.71 -0.0
1,496,745 - DvMF_1215 0.71 +0.3
1,496,777 - DvMF_1215 0.75 -0.1
1,496,835 - DvMF_1215 0.84 +0.1
1,497,152 + -0.3
1,497,326 - -0.4
1,497,326 - -0.1
1,497,444 - DvMF_1216 0.17 +0.3
1,497,559 + DvMF_1216 0.33 -0.0
1,497,820 + DvMF_1216 0.70 +0.1
1,498,325 - +0.1
1,498,706 + DvMF_1217 0.22 -0.1
1,498,839 + DvMF_1217 0.27 -0.5
1,498,943 + DvMF_1217 0.30 -0.4
1,498,951 - DvMF_1217 0.30 -0.3
1,498,951 - DvMF_1217 0.30 -0.6
1,498,951 - DvMF_1217 0.30 -0.2
1,498,962 + DvMF_1217 0.31 -0.4

Or see this region's nucleotide sequence