Experiment: MoYLS4 with A22 0.043 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1148 and DvMF_1149 are separated by 58 nucleotides DvMF_1149 and DvMF_1150 overlap by 4 nucleotides DvMF_1150 and DvMF_1151 are separated by 196 nucleotides
DvMF_1148: DvMF_1148 - TrkA-N domain protein (RefSeq), at 1,408,259 to 1,410,103
_1148
DvMF_1149: DvMF_1149 - protein of unknown function DUF81 (RefSeq), at 1,410,162 to 1,411,055
_1149
DvMF_1150: DvMF_1150 - alkylhydroperoxidase like protein, AhpD family (RefSeq), at 1,411,052 to 1,411,489
_1150
DvMF_1151: DvMF_1151 - transcriptional regulator, LysR family (RefSeq), at 1,411,686 to 1,412,609
_1151
Position (kb)
1410
1411
1412 Strain fitness (log2 ratio)
-1
0
1 at 1409.230 kb on + strand, within DvMF_1148 at 1409.230 kb on + strand, within DvMF_1148 at 1409.357 kb on + strand, within DvMF_1148 at 1409.801 kb on - strand, within DvMF_1148 at 1409.848 kb on + strand, within DvMF_1148 at 1409.853 kb on + strand, within DvMF_1148 at 1409.858 kb on + strand, within DvMF_1148 at 1409.907 kb on + strand, within DvMF_1148 at 1409.957 kb on - strand at 1410.023 kb on - strand at 1410.048 kb on - strand at 1410.170 kb on + strand at 1410.219 kb on + strand at 1410.424 kb on + strand, within DvMF_1149 at 1410.626 kb on - strand, within DvMF_1149 at 1410.735 kb on + strand, within DvMF_1149 at 1410.745 kb on + strand, within DvMF_1149 at 1410.775 kb on + strand, within DvMF_1149 at 1410.857 kb on - strand, within DvMF_1149 at 1410.970 kb on - strand at 1411.009 kb on - strand at 1411.228 kb on + strand, within DvMF_1150 at 1411.785 kb on + strand, within DvMF_1151 at 1411.915 kb on - strand, within DvMF_1151
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.043 mg/ml remove 1,409,230 + DvMF_1148 0.53 -0.5 1,409,230 + DvMF_1148 0.53 -0.6 1,409,357 + DvMF_1148 0.60 -0.7 1,409,801 - DvMF_1148 0.84 -1.2 1,409,848 + DvMF_1148 0.86 -0.7 1,409,853 + DvMF_1148 0.86 -0.6 1,409,858 + DvMF_1148 0.87 +0.1 1,409,907 + DvMF_1148 0.89 -0.4 1,409,957 - -0.9 1,410,023 - -0.2 1,410,048 - -0.4 1,410,170 + -0.5 1,410,219 + -0.3 1,410,424 + DvMF_1149 0.29 -0.4 1,410,626 - DvMF_1149 0.52 -0.9 1,410,735 + DvMF_1149 0.64 -0.7 1,410,745 + DvMF_1149 0.65 -0.0 1,410,775 + DvMF_1149 0.69 -1.1 1,410,857 - DvMF_1149 0.78 -0.3 1,410,970 - -0.2 1,411,009 - +1.1 1,411,228 + DvMF_1150 0.40 -0.2 1,411,785 + DvMF_1151 0.11 -0.3 1,411,915 - DvMF_1151 0.25 -1.0
Or see this region's nucleotide sequence