Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1039

Experiment: MoYLS4 with A22 0.043 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1038 and DvMF_1039 are separated by 32 nucleotidesDvMF_1039 and DvMF_1040 are separated by 455 nucleotides DvMF_1038: DvMF_1038 - twitching motility protein (RefSeq), at 1,260,087 to 1,261,205 _1038 DvMF_1039: DvMF_1039 - Type II secretory pathway component ExeA (predicted ATPase)-like protein (RefSeq), at 1,261,238 to 1,263,280 _1039 DvMF_1040: DvMF_1040 - PhoH family protein (RefSeq), at 1,263,736 to 1,265,313 _1040 Position (kb) 1261 1262 1263 1264Strain fitness (log2 ratio) -1 0 1at 1260.332 kb on - strand, within DvMF_1038at 1260.549 kb on - strand, within DvMF_1038at 1260.604 kb on + strand, within DvMF_1038at 1260.663 kb on + strand, within DvMF_1038at 1260.717 kb on - strand, within DvMF_1038at 1260.784 kb on - strand, within DvMF_1038at 1260.993 kb on - strand, within DvMF_1038at 1261.044 kb on - strand, within DvMF_1038at 1261.095 kb on + strandat 1261.511 kb on - strand, within DvMF_1039at 1261.797 kb on + strand, within DvMF_1039at 1261.830 kb on + strand, within DvMF_1039at 1261.883 kb on + strand, within DvMF_1039at 1261.955 kb on - strand, within DvMF_1039at 1262.011 kb on + strand, within DvMF_1039at 1262.222 kb on - strand, within DvMF_1039at 1262.269 kb on - strand, within DvMF_1039at 1262.274 kb on - strand, within DvMF_1039at 1262.359 kb on + strand, within DvMF_1039at 1262.407 kb on - strand, within DvMF_1039at 1262.534 kb on + strand, within DvMF_1039at 1262.632 kb on - strand, within DvMF_1039at 1263.123 kb on - strandat 1263.415 kb on - strandat 1263.602 kb on + strandat 1264.221 kb on + strand, within DvMF_1040

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.043 mg/ml
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1,260,332 - DvMF_1038 0.22 -0.4
1,260,549 - DvMF_1038 0.41 -0.3
1,260,604 + DvMF_1038 0.46 -0.4
1,260,663 + DvMF_1038 0.51 -0.6
1,260,717 - DvMF_1038 0.56 +0.6
1,260,784 - DvMF_1038 0.62 +0.1
1,260,993 - DvMF_1038 0.81 -0.7
1,261,044 - DvMF_1038 0.86 -0.9
1,261,095 + -0.2
1,261,511 - DvMF_1039 0.13 -0.6
1,261,797 + DvMF_1039 0.27 -1.0
1,261,830 + DvMF_1039 0.29 -0.6
1,261,883 + DvMF_1039 0.32 -0.9
1,261,955 - DvMF_1039 0.35 -0.4
1,262,011 + DvMF_1039 0.38 -0.4
1,262,222 - DvMF_1039 0.48 -0.2
1,262,269 - DvMF_1039 0.50 -0.8
1,262,274 - DvMF_1039 0.51 -0.8
1,262,359 + DvMF_1039 0.55 -0.0
1,262,407 - DvMF_1039 0.57 -0.2
1,262,534 + DvMF_1039 0.63 -0.8
1,262,632 - DvMF_1039 0.68 -0.4
1,263,123 - -0.4
1,263,415 - -0.1
1,263,602 + -0.9
1,264,221 + DvMF_1040 0.31 -0.1

Or see this region's nucleotide sequence