Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0882

Experiment: MoYLS4 with A22 0.043 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0881 and DvMF_0882 are separated by 319 nucleotidesDvMF_0882 and DvMF_0883 are separated by 289 nucleotides DvMF_0881: DvMF_0881 - phosphate ABC transporter, ATPase subunit (RefSeq), at 1,063,778 to 1,064,545 _0881 DvMF_0882: DvMF_0882 - two component transcriptional regulator, winged helix family (RefSeq), at 1,064,865 to 1,065,557 _0882 DvMF_0883: DvMF_0883 - 3'-5' exonuclease (RefSeq), at 1,065,847 to 1,066,452 _0883 Position (kb) 1064 1065 1066Strain fitness (log2 ratio) -2 -1 0 1at 1064.059 kb on - strand, within DvMF_0881at 1064.098 kb on + strand, within DvMF_0881at 1064.627 kb on + strandat 1064.723 kb on - strandat 1064.963 kb on - strand, within DvMF_0882at 1065.009 kb on - strand, within DvMF_0882at 1065.139 kb on - strand, within DvMF_0882at 1065.478 kb on - strand, within DvMF_0882at 1065.890 kb on - strandat 1066.156 kb on + strand, within DvMF_0883

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.043 mg/ml
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1,064,059 - DvMF_0881 0.37 -0.3
1,064,098 + DvMF_0881 0.42 -0.4
1,064,627 + -0.3
1,064,723 - +0.2
1,064,963 - DvMF_0882 0.14 -0.2
1,065,009 - DvMF_0882 0.21 +1.2
1,065,139 - DvMF_0882 0.40 -0.4
1,065,478 - DvMF_0882 0.88 -0.0
1,065,890 - -2.5
1,066,156 + DvMF_0883 0.51 -2.6

Or see this region's nucleotide sequence