Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0335

Experiment: MoYLS4 with A22 0.043 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0334 and DvMF_0335 are separated by 339 nucleotidesDvMF_0335 and DvMF_0336 are separated by 165 nucleotides DvMF_0334: DvMF_0334 - Glutamate--tRNA ligase (RefSeq), at 390,542 to 391,663 _0334 DvMF_0335: DvMF_0335 - hypothetical protein (RefSeq), at 392,003 to 392,395 _0335 DvMF_0336: DvMF_0336 - transcriptional regulator, TetR family (RefSeq), at 392,561 to 393,136 _0336 Position (kb) 392 393Strain fitness (log2 ratio) -1 0 1at 391.006 kb on - strand, within DvMF_0334at 391.006 kb on - strand, within DvMF_0334at 391.414 kb on - strand, within DvMF_0334at 391.565 kb on - strandat 391.728 kb on + strandat 391.845 kb on + strandat 391.880 kb on - strandat 392.105 kb on + strand, within DvMF_0335at 392.261 kb on + strand, within DvMF_0335at 392.294 kb on + strand, within DvMF_0335at 392.910 kb on + strand, within DvMF_0336at 392.970 kb on - strand, within DvMF_0336at 393.224 kb on - strandat 393.298 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.043 mg/ml
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391,006 - DvMF_0334 0.41 +0.0
391,006 - DvMF_0334 0.41 -0.3
391,414 - DvMF_0334 0.78 -0.8
391,565 - -0.6
391,728 + -0.5
391,845 + -0.9
391,880 - -0.6
392,105 + DvMF_0335 0.26 -0.3
392,261 + DvMF_0335 0.66 -0.0
392,294 + DvMF_0335 0.74 -0.2
392,910 + DvMF_0336 0.61 -0.2
392,970 - DvMF_0336 0.71 -0.2
393,224 - -0.5
393,298 + -0.5

Or see this region's nucleotide sequence