Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0073

Experiment: MoYLS4 with A22 0.043 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0072 and DvMF_0073 are separated by 122 nucleotidesDvMF_0073 and DvMF_0074 are separated by 283 nucleotides DvMF_0072: DvMF_0072 - hypothetical protein (RefSeq), at 92,367 to 93,407 _0072 DvMF_0073: DvMF_0073 - protein of unknown function DUF45 (RefSeq), at 93,530 to 94,480 _0073 DvMF_0074: DvMF_0074 - sulfate adenylyltransferase (RefSeq), at 94,764 to 96,050 _0074 Position (kb) 93 94 95Strain fitness (log2 ratio) -1 0 1at 92.729 kb on - strand, within DvMF_0072at 92.736 kb on - strand, within DvMF_0072at 92.955 kb on - strand, within DvMF_0072at 93.078 kb on - strand, within DvMF_0072at 93.490 kb on - strandat 93.604 kb on - strandat 93.622 kb on + strandat 93.630 kb on - strand, within DvMF_0073at 93.768 kb on - strand, within DvMF_0073at 93.803 kb on - strand, within DvMF_0073at 94.045 kb on - strand, within DvMF_0073at 94.050 kb on - strand, within DvMF_0073at 94.128 kb on + strand, within DvMF_0073at 94.293 kb on + strand, within DvMF_0073at 94.337 kb on - strand, within DvMF_0073at 94.347 kb on + strand, within DvMF_0073at 94.351 kb on + strand, within DvMF_0073at 94.361 kb on - strand, within DvMF_0073at 94.386 kb on + strandat 94.394 kb on - strandat 94.394 kb on - strandat 94.476 kb on + strandat 94.495 kb on - strandat 94.500 kb on - strandat 94.506 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.043 mg/ml
remove
92,729 - DvMF_0072 0.35 -1.1
92,736 - DvMF_0072 0.35 -1.0
92,955 - DvMF_0072 0.56 -1.2
93,078 - DvMF_0072 0.68 -0.3
93,490 - -0.3
93,604 - -0.6
93,622 + -0.9
93,630 - DvMF_0073 0.11 -0.7
93,768 - DvMF_0073 0.25 -0.7
93,803 - DvMF_0073 0.29 -0.6
94,045 - DvMF_0073 0.54 -1.6
94,050 - DvMF_0073 0.55 -0.6
94,128 + DvMF_0073 0.63 -0.6
94,293 + DvMF_0073 0.80 -0.4
94,337 - DvMF_0073 0.85 -0.3
94,347 + DvMF_0073 0.86 -0.9
94,351 + DvMF_0073 0.86 -0.5
94,361 - DvMF_0073 0.87 -0.3
94,386 + +0.4
94,394 - +0.2
94,394 - -0.8
94,476 + -0.1
94,495 - -0.5
94,500 - -0.5
94,506 + -0.3

Or see this region's nucleotide sequence