Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_778

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_776 and Pf6N2E2_777 are separated by 128 nucleotidesPf6N2E2_777 and Pf6N2E2_778 are separated by 76 nucleotidesPf6N2E2_778 and Pf6N2E2_779 overlap by 7 nucleotides Pf6N2E2_776 - Transcriptional regulator, LysR family, at 885,831 to 886,739 _776 Pf6N2E2_777 - FMN-dependent NADH-azoreductase, at 886,868 to 887,476 _777 Pf6N2E2_778 - Probable lipoprotein signal peptide, at 887,553 to 888,698 _778 Pf6N2E2_779 - transporter, putative, at 888,692 to 889,885 _779 Position (kb) 887 888 889Strain fitness (log2 ratio) -2 -1 0 1at 886.714 kb on + strandat 886.714 kb on + strandat 886.714 kb on + strandat 886.717 kb on + strandat 886.717 kb on + strandat 886.718 kb on - strandat 886.718 kb on - strandat 886.773 kb on + strandat 886.774 kb on - strandat 886.811 kb on - strandat 886.814 kb on + strandat 886.814 kb on + strandat 886.868 kb on - strandat 886.876 kb on - strandat 886.978 kb on + strand, within Pf6N2E2_777at 886.983 kb on - strand, within Pf6N2E2_777at 886.983 kb on - strand, within Pf6N2E2_777at 887.045 kb on - strand, within Pf6N2E2_777at 887.092 kb on + strand, within Pf6N2E2_777at 887.153 kb on + strand, within Pf6N2E2_777at 887.154 kb on - strand, within Pf6N2E2_777at 887.333 kb on + strand, within Pf6N2E2_777at 887.333 kb on + strand, within Pf6N2E2_777at 887.333 kb on + strand, within Pf6N2E2_777at 887.334 kb on - strand, within Pf6N2E2_777at 887.359 kb on - strand, within Pf6N2E2_777at 887.423 kb on - strandat 887.486 kb on - strandat 887.486 kb on - strandat 887.516 kb on + strandat 887.516 kb on + strandat 887.516 kb on + strandat 887.517 kb on - strandat 887.527 kb on - strandat 887.565 kb on - strandat 887.565 kb on - strandat 887.565 kb on - strandat 887.599 kb on - strandat 887.666 kb on - strandat 887.817 kb on + strand, within Pf6N2E2_778at 887.817 kb on + strand, within Pf6N2E2_778at 887.911 kb on + strand, within Pf6N2E2_778at 888.063 kb on + strand, within Pf6N2E2_778at 888.163 kb on - strand, within Pf6N2E2_778at 888.270 kb on - strand, within Pf6N2E2_778at 888.377 kb on + strand, within Pf6N2E2_778at 888.378 kb on - strand, within Pf6N2E2_778at 888.412 kb on - strand, within Pf6N2E2_778at 888.697 kb on - strandat 888.709 kb on + strandat 888.710 kb on - strandat 888.710 kb on - strandat 888.710 kb on - strandat 888.710 kb on - strandat 888.859 kb on - strand, within Pf6N2E2_779at 888.928 kb on - strand, within Pf6N2E2_779at 889.086 kb on - strand, within Pf6N2E2_779at 889.158 kb on + strand, within Pf6N2E2_779at 889.159 kb on - strand, within Pf6N2E2_779at 889.414 kb on - strand, within Pf6N2E2_779at 889.414 kb on - strand, within Pf6N2E2_779

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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886,714 + -0.3
886,714 + +0.6
886,714 + -0.1
886,717 + -0.0
886,717 + +0.8
886,718 - -0.6
886,718 - +0.2
886,773 + -0.1
886,774 - -0.0
886,811 - +0.7
886,814 + -0.6
886,814 + +0.7
886,868 - +0.7
886,876 - +0.1
886,978 + Pf6N2E2_777 0.18 +0.2
886,983 - Pf6N2E2_777 0.19 -2.4
886,983 - Pf6N2E2_777 0.19 +0.3
887,045 - Pf6N2E2_777 0.29 +0.1
887,092 + Pf6N2E2_777 0.37 +0.1
887,153 + Pf6N2E2_777 0.47 -0.5
887,154 - Pf6N2E2_777 0.47 +0.9
887,333 + Pf6N2E2_777 0.76 +0.6
887,333 + Pf6N2E2_777 0.76 +0.3
887,333 + Pf6N2E2_777 0.76 +0.2
887,334 - Pf6N2E2_777 0.77 -0.4
887,359 - Pf6N2E2_777 0.81 +1.4
887,423 - -0.7
887,486 - -0.2
887,486 - -0.8
887,516 + -0.1
887,516 + -0.6
887,516 + +0.2
887,517 - +0.0
887,527 - +0.0
887,565 - -0.1
887,565 - +0.0
887,565 - +0.6
887,599 - -0.2
887,666 - -2.1
887,817 + Pf6N2E2_778 0.23 +0.3
887,817 + Pf6N2E2_778 0.23 -0.9
887,911 + Pf6N2E2_778 0.31 -0.5
888,063 + Pf6N2E2_778 0.45 -0.3
888,163 - Pf6N2E2_778 0.53 -1.0
888,270 - Pf6N2E2_778 0.63 -0.3
888,377 + Pf6N2E2_778 0.72 +0.6
888,378 - Pf6N2E2_778 0.72 -0.8
888,412 - Pf6N2E2_778 0.75 +0.3
888,697 - +0.6
888,709 + +0.0
888,710 - +0.0
888,710 - -0.3
888,710 - -0.3
888,710 - +0.6
888,859 - Pf6N2E2_779 0.14 +0.5
888,928 - Pf6N2E2_779 0.20 +0.7
889,086 - Pf6N2E2_779 0.33 +0.3
889,158 + Pf6N2E2_779 0.39 -0.3
889,159 - Pf6N2E2_779 0.39 -0.1
889,414 - Pf6N2E2_779 0.60 +0.7
889,414 - Pf6N2E2_779 0.60 -0.3

Or see this region's nucleotide sequence