Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5137

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5136 and Pf6N2E2_5137 are separated by 117 nucleotidesPf6N2E2_5137 and Pf6N2E2_5138 are separated by 202 nucleotidesPf6N2E2_5138 and Pf6N2E2_5139 overlap by 4 nucleotides Pf6N2E2_5136 - FIG028593: membrane protein, at 5,921,413 to 5,922,099 _5136 Pf6N2E2_5137 - FIG00956650: hypothetical protein, at 5,922,217 to 5,922,378 _5137 Pf6N2E2_5138 - FIG003276: zinc-binding protein, at 5,922,581 to 5,922,781 _5138 Pf6N2E2_5139 - Dephospho-CoA kinase (EC 2.7.1.24), at 5,922,778 to 5,923,389 _5139 Position (kb) 5922 5923Strain fitness (log2 ratio) -1 0 1at 5921.256 kb on + strandat 5921.256 kb on + strandat 5921.256 kb on + strandat 5921.257 kb on - strandat 5921.406 kb on + strandat 5921.407 kb on - strandat 5921.407 kb on - strandat 5921.432 kb on + strandat 5921.467 kb on + strandat 5921.467 kb on + strandat 5921.467 kb on + strandat 5921.468 kb on - strandat 5921.468 kb on - strandat 5921.468 kb on - strandat 5921.471 kb on + strandat 5921.471 kb on + strandat 5921.471 kb on + strandat 5921.472 kb on - strandat 5921.472 kb on - strandat 5921.614 kb on + strand, within Pf6N2E2_5136at 5921.760 kb on + strand, within Pf6N2E2_5136at 5921.761 kb on - strand, within Pf6N2E2_5136at 5921.830 kb on + strand, within Pf6N2E2_5136at 5921.830 kb on + strand, within Pf6N2E2_5136at 5921.830 kb on + strand, within Pf6N2E2_5136at 5921.830 kb on + strand, within Pf6N2E2_5136at 5921.830 kb on + strand, within Pf6N2E2_5136at 5921.830 kb on + strand, within Pf6N2E2_5136at 5921.830 kb on + strand, within Pf6N2E2_5136at 5921.830 kb on + strand, within Pf6N2E2_5136at 5921.830 kb on + strand, within Pf6N2E2_5136at 5921.830 kb on + strand, within Pf6N2E2_5136at 5921.831 kb on - strand, within Pf6N2E2_5136at 5921.831 kb on - strand, within Pf6N2E2_5136at 5921.831 kb on - strand, within Pf6N2E2_5136at 5921.831 kb on - strand, within Pf6N2E2_5136at 5921.831 kb on - strand, within Pf6N2E2_5136at 5921.831 kb on - strand, within Pf6N2E2_5136at 5921.831 kb on - strand, within Pf6N2E2_5136at 5921.831 kb on - strand, within Pf6N2E2_5136at 5921.831 kb on - strand, within Pf6N2E2_5136at 5921.831 kb on - strand, within Pf6N2E2_5136at 5921.831 kb on - strand, within Pf6N2E2_5136at 5921.831 kb on - strand, within Pf6N2E2_5136at 5921.832 kb on + strand, within Pf6N2E2_5136at 5921.832 kb on + strand, within Pf6N2E2_5136at 5921.832 kb on + strand, within Pf6N2E2_5136at 5921.832 kb on + strand, within Pf6N2E2_5136at 5921.832 kb on + strand, within Pf6N2E2_5136at 5921.832 kb on + strand, within Pf6N2E2_5136at 5921.832 kb on + strand, within Pf6N2E2_5136at 5921.833 kb on - strand, within Pf6N2E2_5136at 5921.833 kb on - strand, within Pf6N2E2_5136at 5921.833 kb on - strand, within Pf6N2E2_5136at 5921.908 kb on + strand, within Pf6N2E2_5136at 5921.909 kb on - strand, within Pf6N2E2_5136at 5921.917 kb on - strand, within Pf6N2E2_5136at 5921.917 kb on - strand, within Pf6N2E2_5136at 5921.917 kb on - strand, within Pf6N2E2_5136at 5921.918 kb on + strand, within Pf6N2E2_5136at 5921.918 kb on + strand, within Pf6N2E2_5136at 5921.918 kb on + strand, within Pf6N2E2_5136at 5921.918 kb on + strand, within Pf6N2E2_5136at 5921.919 kb on - strand, within Pf6N2E2_5136at 5921.919 kb on - strand, within Pf6N2E2_5136at 5921.919 kb on - strand, within Pf6N2E2_5136at 5921.919 kb on - strand, within Pf6N2E2_5136at 5921.919 kb on - strand, within Pf6N2E2_5136at 5921.933 kb on - strand, within Pf6N2E2_5136at 5921.957 kb on - strand, within Pf6N2E2_5136at 5921.997 kb on + strand, within Pf6N2E2_5136at 5921.998 kb on - strand, within Pf6N2E2_5136at 5922.061 kb on + strandat 5922.062 kb on - strandat 5922.173 kb on - strandat 5922.173 kb on - strandat 5922.173 kb on - strandat 5922.202 kb on - strandat 5922.358 kb on + strand, within Pf6N2E2_5137at 5922.358 kb on + strand, within Pf6N2E2_5137at 5922.358 kb on + strand, within Pf6N2E2_5137at 5922.359 kb on - strand, within Pf6N2E2_5137at 5922.359 kb on - strand, within Pf6N2E2_5137at 5922.391 kb on + strandat 5922.429 kb on + strandat 5922.429 kb on + strandat 5922.801 kb on + strandat 5922.801 kb on + strandat 5922.802 kb on - strandat 5922.802 kb on - strandat 5922.802 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,921,256 + +1.2
5,921,256 + -0.4
5,921,256 + +0.0
5,921,257 - -0.6
5,921,406 + +0.2
5,921,407 - +0.4
5,921,407 - +0.2
5,921,432 + -1.3
5,921,467 + +0.0
5,921,467 + +0.4
5,921,467 + -0.2
5,921,468 - -0.2
5,921,468 - -0.7
5,921,468 - +0.1
5,921,471 + +0.2
5,921,471 + +0.1
5,921,471 + -0.6
5,921,472 - +0.5
5,921,472 - +0.8
5,921,614 + Pf6N2E2_5136 0.29 +0.7
5,921,760 + Pf6N2E2_5136 0.51 -0.3
5,921,761 - Pf6N2E2_5136 0.51 +0.5
5,921,830 + Pf6N2E2_5136 0.61 +0.5
5,921,830 + Pf6N2E2_5136 0.61 +0.0
5,921,830 + Pf6N2E2_5136 0.61 +0.9
5,921,830 + Pf6N2E2_5136 0.61 +0.8
5,921,830 + Pf6N2E2_5136 0.61 -0.5
5,921,830 + Pf6N2E2_5136 0.61 +0.8
5,921,830 + Pf6N2E2_5136 0.61 +0.0
5,921,830 + Pf6N2E2_5136 0.61 +1.2
5,921,830 + Pf6N2E2_5136 0.61 +0.3
5,921,830 + Pf6N2E2_5136 0.61 +0.9
5,921,831 - Pf6N2E2_5136 0.61 +0.3
5,921,831 - Pf6N2E2_5136 0.61 +0.3
5,921,831 - Pf6N2E2_5136 0.61 +0.0
5,921,831 - Pf6N2E2_5136 0.61 +0.9
5,921,831 - Pf6N2E2_5136 0.61 -1.3
5,921,831 - Pf6N2E2_5136 0.61 +0.5
5,921,831 - Pf6N2E2_5136 0.61 -0.5
5,921,831 - Pf6N2E2_5136 0.61 -0.0
5,921,831 - Pf6N2E2_5136 0.61 -0.5
5,921,831 - Pf6N2E2_5136 0.61 +0.7
5,921,831 - Pf6N2E2_5136 0.61 -0.6
5,921,831 - Pf6N2E2_5136 0.61 -0.5
5,921,832 + Pf6N2E2_5136 0.61 -1.4
5,921,832 + Pf6N2E2_5136 0.61 -0.1
5,921,832 + Pf6N2E2_5136 0.61 -1.2
5,921,832 + Pf6N2E2_5136 0.61 -0.2
5,921,832 + Pf6N2E2_5136 0.61 +0.7
5,921,832 + Pf6N2E2_5136 0.61 +0.0
5,921,832 + Pf6N2E2_5136 0.61 +1.1
5,921,833 - Pf6N2E2_5136 0.61 -0.1
5,921,833 - Pf6N2E2_5136 0.61 +0.5
5,921,833 - Pf6N2E2_5136 0.61 -1.0
5,921,908 + Pf6N2E2_5136 0.72 +0.1
5,921,909 - Pf6N2E2_5136 0.72 -0.3
5,921,917 - Pf6N2E2_5136 0.73 -0.2
5,921,917 - Pf6N2E2_5136 0.73 -0.7
5,921,917 - Pf6N2E2_5136 0.73 -0.5
5,921,918 + Pf6N2E2_5136 0.74 -0.2
5,921,918 + Pf6N2E2_5136 0.74 +0.1
5,921,918 + Pf6N2E2_5136 0.74 -0.4
5,921,918 + Pf6N2E2_5136 0.74 -0.4
5,921,919 - Pf6N2E2_5136 0.74 +0.0
5,921,919 - Pf6N2E2_5136 0.74 -0.1
5,921,919 - Pf6N2E2_5136 0.74 -0.7
5,921,919 - Pf6N2E2_5136 0.74 +0.5
5,921,919 - Pf6N2E2_5136 0.74 -0.4
5,921,933 - Pf6N2E2_5136 0.76 -0.0
5,921,957 - Pf6N2E2_5136 0.79 +0.9
5,921,997 + Pf6N2E2_5136 0.85 +0.4
5,921,998 - Pf6N2E2_5136 0.85 +0.5
5,922,061 + +0.6
5,922,062 - +0.7
5,922,173 - +0.8
5,922,173 - +0.8
5,922,173 - +0.0
5,922,202 - +0.2
5,922,358 + Pf6N2E2_5137 0.87 -0.2
5,922,358 + Pf6N2E2_5137 0.87 +0.2
5,922,358 + Pf6N2E2_5137 0.87 -0.7
5,922,359 - Pf6N2E2_5137 0.88 -0.4
5,922,359 - Pf6N2E2_5137 0.88 -0.9
5,922,391 + -0.5
5,922,429 + +0.1
5,922,429 + -0.5
5,922,801 + +1.4
5,922,801 + +0.8
5,922,802 - +0.4
5,922,802 - -1.7
5,922,802 - -0.1

Or see this region's nucleotide sequence