Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5136 and Pf6N2E2_5137 are separated by 117 nucleotides Pf6N2E2_5137 and Pf6N2E2_5138 are separated by 202 nucleotides Pf6N2E2_5138 and Pf6N2E2_5139 overlap by 4 nucleotides
Pf6N2E2_5136 - FIG028593: membrane protein, at 5,921,413 to 5,922,099
_5136
Pf6N2E2_5137 - FIG00956650: hypothetical protein, at 5,922,217 to 5,922,378
_5137
Pf6N2E2_5138 - FIG003276: zinc-binding protein, at 5,922,581 to 5,922,781
_5138
Pf6N2E2_5139 - Dephospho-CoA kinase (EC 2.7.1.24), at 5,922,778 to 5,923,389
_5139
Position (kb)
5922
5923 Strain fitness (log2 ratio)
-1
0
1 at 5921.256 kb on + strand at 5921.256 kb on + strand at 5921.256 kb on + strand at 5921.257 kb on - strand at 5921.406 kb on + strand at 5921.407 kb on - strand at 5921.407 kb on - strand at 5921.432 kb on + strand at 5921.467 kb on + strand at 5921.467 kb on + strand at 5921.467 kb on + strand at 5921.468 kb on - strand at 5921.468 kb on - strand at 5921.468 kb on - strand at 5921.471 kb on + strand at 5921.471 kb on + strand at 5921.471 kb on + strand at 5921.472 kb on - strand at 5921.472 kb on - strand at 5921.614 kb on + strand, within Pf6N2E2_5136 at 5921.760 kb on + strand, within Pf6N2E2_5136 at 5921.761 kb on - strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.833 kb on - strand, within Pf6N2E2_5136 at 5921.833 kb on - strand, within Pf6N2E2_5136 at 5921.833 kb on - strand, within Pf6N2E2_5136 at 5921.908 kb on + strand, within Pf6N2E2_5136 at 5921.909 kb on - strand, within Pf6N2E2_5136 at 5921.917 kb on - strand, within Pf6N2E2_5136 at 5921.917 kb on - strand, within Pf6N2E2_5136 at 5921.917 kb on - strand, within Pf6N2E2_5136 at 5921.918 kb on + strand, within Pf6N2E2_5136 at 5921.918 kb on + strand, within Pf6N2E2_5136 at 5921.918 kb on + strand, within Pf6N2E2_5136 at 5921.918 kb on + strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.933 kb on - strand, within Pf6N2E2_5136 at 5921.957 kb on - strand, within Pf6N2E2_5136 at 5921.997 kb on + strand, within Pf6N2E2_5136 at 5921.998 kb on - strand, within Pf6N2E2_5136 at 5922.061 kb on + strand at 5922.062 kb on - strand at 5922.173 kb on - strand at 5922.173 kb on - strand at 5922.173 kb on - strand at 5922.202 kb on - strand at 5922.358 kb on + strand, within Pf6N2E2_5137 at 5922.358 kb on + strand, within Pf6N2E2_5137 at 5922.358 kb on + strand, within Pf6N2E2_5137 at 5922.359 kb on - strand, within Pf6N2E2_5137 at 5922.359 kb on - strand, within Pf6N2E2_5137 at 5922.391 kb on + strand at 5922.429 kb on + strand at 5922.429 kb on + strand at 5922.801 kb on + strand at 5922.801 kb on + strand at 5922.802 kb on - strand at 5922.802 kb on - strand at 5922.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,921,256 + +1.2 5,921,256 + -0.4 5,921,256 + +0.0 5,921,257 - -0.6 5,921,406 + +0.2 5,921,407 - +0.4 5,921,407 - +0.2 5,921,432 + -1.3 5,921,467 + +0.0 5,921,467 + +0.4 5,921,467 + -0.2 5,921,468 - -0.2 5,921,468 - -0.7 5,921,468 - +0.1 5,921,471 + +0.2 5,921,471 + +0.1 5,921,471 + -0.6 5,921,472 - +0.5 5,921,472 - +0.8 5,921,614 + Pf6N2E2_5136 0.29 +0.7 5,921,760 + Pf6N2E2_5136 0.51 -0.3 5,921,761 - Pf6N2E2_5136 0.51 +0.5 5,921,830 + Pf6N2E2_5136 0.61 +0.5 5,921,830 + Pf6N2E2_5136 0.61 +0.0 5,921,830 + Pf6N2E2_5136 0.61 +0.9 5,921,830 + Pf6N2E2_5136 0.61 +0.8 5,921,830 + Pf6N2E2_5136 0.61 -0.5 5,921,830 + Pf6N2E2_5136 0.61 +0.8 5,921,830 + Pf6N2E2_5136 0.61 +0.0 5,921,830 + Pf6N2E2_5136 0.61 +1.2 5,921,830 + Pf6N2E2_5136 0.61 +0.3 5,921,830 + Pf6N2E2_5136 0.61 +0.9 5,921,831 - Pf6N2E2_5136 0.61 +0.3 5,921,831 - Pf6N2E2_5136 0.61 +0.3 5,921,831 - Pf6N2E2_5136 0.61 +0.0 5,921,831 - Pf6N2E2_5136 0.61 +0.9 5,921,831 - Pf6N2E2_5136 0.61 -1.3 5,921,831 - Pf6N2E2_5136 0.61 +0.5 5,921,831 - Pf6N2E2_5136 0.61 -0.5 5,921,831 - Pf6N2E2_5136 0.61 -0.0 5,921,831 - Pf6N2E2_5136 0.61 -0.5 5,921,831 - Pf6N2E2_5136 0.61 +0.7 5,921,831 - Pf6N2E2_5136 0.61 -0.6 5,921,831 - Pf6N2E2_5136 0.61 -0.5 5,921,832 + Pf6N2E2_5136 0.61 -1.4 5,921,832 + Pf6N2E2_5136 0.61 -0.1 5,921,832 + Pf6N2E2_5136 0.61 -1.2 5,921,832 + Pf6N2E2_5136 0.61 -0.2 5,921,832 + Pf6N2E2_5136 0.61 +0.7 5,921,832 + Pf6N2E2_5136 0.61 +0.0 5,921,832 + Pf6N2E2_5136 0.61 +1.1 5,921,833 - Pf6N2E2_5136 0.61 -0.1 5,921,833 - Pf6N2E2_5136 0.61 +0.5 5,921,833 - Pf6N2E2_5136 0.61 -1.0 5,921,908 + Pf6N2E2_5136 0.72 +0.1 5,921,909 - Pf6N2E2_5136 0.72 -0.3 5,921,917 - Pf6N2E2_5136 0.73 -0.2 5,921,917 - Pf6N2E2_5136 0.73 -0.7 5,921,917 - Pf6N2E2_5136 0.73 -0.5 5,921,918 + Pf6N2E2_5136 0.74 -0.2 5,921,918 + Pf6N2E2_5136 0.74 +0.1 5,921,918 + Pf6N2E2_5136 0.74 -0.4 5,921,918 + Pf6N2E2_5136 0.74 -0.4 5,921,919 - Pf6N2E2_5136 0.74 +0.0 5,921,919 - Pf6N2E2_5136 0.74 -0.1 5,921,919 - Pf6N2E2_5136 0.74 -0.7 5,921,919 - Pf6N2E2_5136 0.74 +0.5 5,921,919 - Pf6N2E2_5136 0.74 -0.4 5,921,933 - Pf6N2E2_5136 0.76 -0.0 5,921,957 - Pf6N2E2_5136 0.79 +0.9 5,921,997 + Pf6N2E2_5136 0.85 +0.4 5,921,998 - Pf6N2E2_5136 0.85 +0.5 5,922,061 + +0.6 5,922,062 - +0.7 5,922,173 - +0.8 5,922,173 - +0.8 5,922,173 - +0.0 5,922,202 - +0.2 5,922,358 + Pf6N2E2_5137 0.87 -0.2 5,922,358 + Pf6N2E2_5137 0.87 +0.2 5,922,358 + Pf6N2E2_5137 0.87 -0.7 5,922,359 - Pf6N2E2_5137 0.88 -0.4 5,922,359 - Pf6N2E2_5137 0.88 -0.9 5,922,391 + -0.5 5,922,429 + +0.1 5,922,429 + -0.5 5,922,801 + +1.4 5,922,801 + +0.8 5,922,802 - +0.4 5,922,802 - -1.7 5,922,802 - -0.1
Or see this region's nucleotide sequence