Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_356 and Pf6N2E2_357 are separated by 156 nucleotides Pf6N2E2_357 and Pf6N2E2_358 are separated by 21 nucleotides Pf6N2E2_358 and Pf6N2E2_359 are separated by 36 nucleotides
Pf6N2E2_356 - hypothetical protein, at 421,875 to 422,822
_356
Pf6N2E2_357 - hypothetical protein, at 422,979 to 423,353
_357
Pf6N2E2_358 - Haloacid dehalogenase, type II, at 423,375 to 424,043
_358
Pf6N2E2_359 - Opine oxidase subunit B, at 424,080 to 425,354
_359
Position (kb)
423
424
425 Strain fitness (log2 ratio)
-1
0
1
2 at 423.018 kb on + strand, within Pf6N2E2_357 at 423.023 kb on + strand, within Pf6N2E2_357 at 423.023 kb on + strand, within Pf6N2E2_357 at 423.023 kb on + strand, within Pf6N2E2_357 at 423.137 kb on + strand, within Pf6N2E2_357 at 423.137 kb on + strand, within Pf6N2E2_357 at 423.138 kb on - strand, within Pf6N2E2_357 at 423.138 kb on - strand, within Pf6N2E2_357 at 423.282 kb on + strand, within Pf6N2E2_357 at 423.282 kb on + strand, within Pf6N2E2_357 at 423.283 kb on - strand, within Pf6N2E2_357 at 423.283 kb on - strand, within Pf6N2E2_357 at 423.396 kb on + strand at 423.396 kb on + strand at 423.397 kb on - strand at 423.397 kb on - strand at 423.397 kb on - strand at 423.397 kb on - strand at 423.397 kb on - strand at 423.397 kb on - strand at 423.556 kb on - strand, within Pf6N2E2_358 at 423.633 kb on + strand, within Pf6N2E2_358 at 423.633 kb on + strand, within Pf6N2E2_358 at 423.781 kb on - strand, within Pf6N2E2_358 at 423.813 kb on + strand, within Pf6N2E2_358 at 424.095 kb on + strand at 424.360 kb on - strand, within Pf6N2E2_359 at 424.363 kb on - strand, within Pf6N2E2_359 at 424.371 kb on + strand, within Pf6N2E2_359 at 424.477 kb on - strand at 424.861 kb on + strand, within Pf6N2E2_359 at 424.862 kb on - strand, within Pf6N2E2_359 at 424.908 kb on + strand, within Pf6N2E2_359 at 424.908 kb on + strand, within Pf6N2E2_359 at 424.908 kb on + strand, within Pf6N2E2_359 at 424.908 kb on + strand, within Pf6N2E2_359 at 424.908 kb on + strand, within Pf6N2E2_359 at 424.908 kb on + strand, within Pf6N2E2_359 at 424.908 kb on + strand, within Pf6N2E2_359 at 424.908 kb on + strand, within Pf6N2E2_359 at 424.908 kb on + strand, within Pf6N2E2_359 at 424.909 kb on - strand, within Pf6N2E2_359 at 424.909 kb on - strand, within Pf6N2E2_359 at 424.909 kb on - strand, within Pf6N2E2_359 at 424.909 kb on - strand, within Pf6N2E2_359 at 424.909 kb on - strand, within Pf6N2E2_359 at 424.909 kb on - strand, within Pf6N2E2_359 at 424.909 kb on - strand, within Pf6N2E2_359 at 424.935 kb on + strand, within Pf6N2E2_359 at 424.936 kb on - strand, within Pf6N2E2_359
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 423,018 + Pf6N2E2_357 0.10 +0.5 423,023 + Pf6N2E2_357 0.12 -0.1 423,023 + Pf6N2E2_357 0.12 -0.0 423,023 + Pf6N2E2_357 0.12 +0.5 423,137 + Pf6N2E2_357 0.42 +1.2 423,137 + Pf6N2E2_357 0.42 -0.4 423,138 - Pf6N2E2_357 0.42 +0.6 423,138 - Pf6N2E2_357 0.42 -0.4 423,282 + Pf6N2E2_357 0.81 -0.7 423,282 + Pf6N2E2_357 0.81 -0.0 423,283 - Pf6N2E2_357 0.81 +0.5 423,283 - Pf6N2E2_357 0.81 -0.0 423,396 + +0.6 423,396 + +0.5 423,397 - +0.4 423,397 - +0.4 423,397 - +0.4 423,397 - +0.1 423,397 - +0.1 423,397 - -0.2 423,556 - Pf6N2E2_358 0.27 -0.1 423,633 + Pf6N2E2_358 0.39 -1.6 423,633 + Pf6N2E2_358 0.39 -0.2 423,781 - Pf6N2E2_358 0.61 -1.2 423,813 + Pf6N2E2_358 0.65 -1.6 424,095 + -1.3 424,360 - Pf6N2E2_359 0.22 +0.2 424,363 - Pf6N2E2_359 0.22 -0.0 424,371 + Pf6N2E2_359 0.23 +0.1 424,477 - +2.7 424,861 + Pf6N2E2_359 0.61 -1.3 424,862 - Pf6N2E2_359 0.61 +1.7 424,908 + Pf6N2E2_359 0.65 +1.0 424,908 + Pf6N2E2_359 0.65 -0.1 424,908 + Pf6N2E2_359 0.65 +0.2 424,908 + Pf6N2E2_359 0.65 -0.1 424,908 + Pf6N2E2_359 0.65 -0.6 424,908 + Pf6N2E2_359 0.65 +0.4 424,908 + Pf6N2E2_359 0.65 +0.2 424,908 + Pf6N2E2_359 0.65 -0.0 424,908 + Pf6N2E2_359 0.65 +0.4 424,909 - Pf6N2E2_359 0.65 +0.1 424,909 - Pf6N2E2_359 0.65 -0.5 424,909 - Pf6N2E2_359 0.65 -0.1 424,909 - Pf6N2E2_359 0.65 -0.0 424,909 - Pf6N2E2_359 0.65 +0.9 424,909 - Pf6N2E2_359 0.65 -0.9 424,909 - Pf6N2E2_359 0.65 -0.1 424,935 + Pf6N2E2_359 0.67 -1.0 424,936 - Pf6N2E2_359 0.67 -0.8
Or see this region's nucleotide sequence