Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_313 and Pf6N2E2_314 are separated by 40 nucleotides Pf6N2E2_314 and Pf6N2E2_315 are separated by 193 nucleotides
Pf6N2E2_313 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 379,362 to 381,089
_313
Pf6N2E2_314 - Isochorismatase (EC 3.3.2.1), at 381,130 to 381,663
_314
Pf6N2E2_315 - probable transmembrane protein, at 381,857 to 382,717
_315
Position (kb) 381
382 Strain fitness (log2 ratio) -1
0
1 at 380.163 kb on + strand, within Pf6N2E2_313 at 380.292 kb on + strand, within Pf6N2E2_313 at 380.320 kb on - strand, within Pf6N2E2_313 at 380.337 kb on + strand, within Pf6N2E2_313 at 380.337 kb on + strand, within Pf6N2E2_313 at 380.338 kb on - strand, within Pf6N2E2_313 at 380.387 kb on + strand, within Pf6N2E2_313 at 380.497 kb on - strand, within Pf6N2E2_313 at 380.538 kb on + strand, within Pf6N2E2_313 at 380.538 kb on + strand, within Pf6N2E2_313 at 380.538 kb on + strand, within Pf6N2E2_313 at 380.538 kb on + strand, within Pf6N2E2_313 at 380.539 kb on - strand, within Pf6N2E2_313 at 380.539 kb on - strand, within Pf6N2E2_313 at 380.646 kb on + strand, within Pf6N2E2_313 at 380.647 kb on - strand, within Pf6N2E2_313 at 380.647 kb on - strand, within Pf6N2E2_313 at 380.799 kb on - strand, within Pf6N2E2_313 at 380.817 kb on + strand, within Pf6N2E2_313 at 381.039 kb on + strand at 381.039 kb on + strand at 381.040 kb on - strand at 381.040 kb on - strand at 381.040 kb on - strand at 381.040 kb on - strand at 381.040 kb on - strand at 381.304 kb on + strand, within Pf6N2E2_314 at 381.304 kb on + strand, within Pf6N2E2_314 at 381.304 kb on + strand, within Pf6N2E2_314 at 381.304 kb on + strand, within Pf6N2E2_314 at 381.304 kb on + strand, within Pf6N2E2_314 at 381.305 kb on - strand, within Pf6N2E2_314 at 381.305 kb on - strand, within Pf6N2E2_314 at 381.305 kb on - strand, within Pf6N2E2_314 at 381.305 kb on - strand, within Pf6N2E2_314 at 381.392 kb on - strand, within Pf6N2E2_314 at 381.661 kb on + strand at 381.682 kb on - strand at 381.682 kb on - strand at 381.691 kb on + strand at 381.885 kb on + strand at 381.885 kb on + strand at 381.886 kb on - strand at 381.886 kb on - strand at 382.042 kb on + strand, within Pf6N2E2_315 at 382.043 kb on - strand, within Pf6N2E2_315 at 382.043 kb on - strand, within Pf6N2E2_315 at 382.043 kb on - strand, within Pf6N2E2_315 at 382.262 kb on - strand, within Pf6N2E2_315 at 382.359 kb on + strand, within Pf6N2E2_315 at 382.360 kb on - strand, within Pf6N2E2_315 at 382.360 kb on - strand, within Pf6N2E2_315 at 382.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 380,163 + Pf6N2E2_313 0.46 -0.2 380,292 + Pf6N2E2_313 0.54 -0.3 380,320 - Pf6N2E2_313 0.55 +1.2 380,337 + Pf6N2E2_313 0.56 +1.3 380,337 + Pf6N2E2_313 0.56 +0.3 380,338 - Pf6N2E2_313 0.56 +0.4 380,387 + Pf6N2E2_313 0.59 +0.3 380,497 - Pf6N2E2_313 0.66 +0.7 380,538 + Pf6N2E2_313 0.68 +1.4 380,538 + Pf6N2E2_313 0.68 -0.1 380,538 + Pf6N2E2_313 0.68 -0.4 380,538 + Pf6N2E2_313 0.68 +1.0 380,539 - Pf6N2E2_313 0.68 +0.7 380,539 - Pf6N2E2_313 0.68 -0.9 380,646 + Pf6N2E2_313 0.74 -1.1 380,647 - Pf6N2E2_313 0.74 +0.2 380,647 - Pf6N2E2_313 0.74 +0.6 380,799 - Pf6N2E2_313 0.83 -0.3 380,817 + Pf6N2E2_313 0.84 +0.6 381,039 + +0.3 381,039 + +0.1 381,040 - +0.1 381,040 - -0.4 381,040 - -0.2 381,040 - +0.1 381,040 - +0.2 381,304 + Pf6N2E2_314 0.33 +0.0 381,304 + Pf6N2E2_314 0.33 -0.2 381,304 + Pf6N2E2_314 0.33 -0.7 381,304 + Pf6N2E2_314 0.33 +0.5 381,304 + Pf6N2E2_314 0.33 -0.4 381,305 - Pf6N2E2_314 0.33 +0.1 381,305 - Pf6N2E2_314 0.33 -0.4 381,305 - Pf6N2E2_314 0.33 -1.4 381,305 - Pf6N2E2_314 0.33 -0.2 381,392 - Pf6N2E2_314 0.49 -0.5 381,661 + -0.6 381,682 - +0.3 381,682 - -0.3 381,691 + +0.1 381,885 + +0.6 381,885 + +0.6 381,886 - +0.2 381,886 - -0.5 382,042 + Pf6N2E2_315 0.21 -0.8 382,043 - Pf6N2E2_315 0.22 -0.8 382,043 - Pf6N2E2_315 0.22 +0.6 382,043 - Pf6N2E2_315 0.22 -0.9 382,262 - Pf6N2E2_315 0.47 +0.1 382,359 + Pf6N2E2_315 0.58 +0.3 382,360 - Pf6N2E2_315 0.58 -0.1 382,360 - Pf6N2E2_315 0.58 +0.5 382,655 + -0.4
Or see this region's nucleotide sequence