Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2355 and Pf6N2E2_2356 are separated by 158 nucleotides Pf6N2E2_2356 and Pf6N2E2_2357 are separated by 32 nucleotides Pf6N2E2_2357 and Pf6N2E2_2358 are separated by 713 nucleotides
Pf6N2E2_2355 - MxiG protein; Pathogenicity 1 island effector protein, at 2,788,580 to 2,789,719
_2355
Pf6N2E2_2356 - Hpa2 protein, at 2,789,878 to 2,790,315
_2356
Pf6N2E2_2357 - Invasion protein iagA, at 2,790,348 to 2,791,409
_2357
Pf6N2E2_2358 - Type III secretion host injection protein (YopB), at 2,792,123 to 2,793,223
_2358
Position (kb)
2790
2791
2792 Strain fitness (log2 ratio)
-1
0
1 at 2789.486 kb on + strand, within Pf6N2E2_2355 at 2789.712 kb on - strand at 2789.732 kb on + strand at 2789.733 kb on - strand at 2789.764 kb on + strand at 2789.796 kb on + strand at 2789.797 kb on - strand at 2789.797 kb on - strand at 2789.939 kb on + strand, within Pf6N2E2_2356 at 2789.984 kb on + strand, within Pf6N2E2_2356 at 2790.483 kb on + strand, within Pf6N2E2_2357 at 2790.508 kb on + strand, within Pf6N2E2_2357 at 2790.509 kb on - strand, within Pf6N2E2_2357 at 2790.848 kb on - strand, within Pf6N2E2_2357 at 2791.064 kb on - strand, within Pf6N2E2_2357 at 2791.114 kb on + strand, within Pf6N2E2_2357 at 2791.115 kb on - strand, within Pf6N2E2_2357 at 2791.322 kb on - strand at 2791.337 kb on - strand at 2791.337 kb on - strand at 2791.377 kb on - strand at 2791.377 kb on - strand at 2791.419 kb on + strand at 2791.420 kb on - strand at 2791.420 kb on - strand at 2791.420 kb on - strand at 2791.420 kb on - strand at 2791.420 kb on - strand at 2791.420 kb on - strand at 2791.420 kb on - strand at 2791.420 kb on - strand at 2791.420 kb on - strand at 2791.420 kb on - strand at 2791.482 kb on + strand at 2791.482 kb on + strand at 2791.608 kb on - strand at 2791.625 kb on + strand at 2791.686 kb on + strand at 2791.728 kb on + strand at 2791.728 kb on + strand at 2791.729 kb on - strand at 2791.736 kb on + strand at 2791.751 kb on + strand at 2791.752 kb on - strand at 2791.752 kb on - strand at 2791.930 kb on - strand at 2791.930 kb on - strand at 2792.014 kb on + strand at 2792.015 kb on - strand at 2792.015 kb on - strand at 2792.015 kb on - strand at 2792.015 kb on - strand at 2792.015 kb on - strand at 2792.056 kb on + strand at 2792.077 kb on + strand at 2792.077 kb on + strand at 2792.077 kb on + strand at 2792.078 kb on - strand at 2792.078 kb on - strand at 2792.078 kb on - strand at 2792.220 kb on + strand at 2792.221 kb on - strand at 2792.296 kb on - strand, within Pf6N2E2_2358 at 2792.345 kb on + strand, within Pf6N2E2_2358 at 2792.345 kb on + strand, within Pf6N2E2_2358
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,789,486 + Pf6N2E2_2355 0.79 +0.3 2,789,712 - -0.1 2,789,732 + +0.0 2,789,733 - -1.0 2,789,764 + -0.3 2,789,796 + +0.2 2,789,797 - +0.7 2,789,797 - +0.8 2,789,939 + Pf6N2E2_2356 0.14 -0.3 2,789,984 + Pf6N2E2_2356 0.24 +0.0 2,790,483 + Pf6N2E2_2357 0.13 +0.0 2,790,508 + Pf6N2E2_2357 0.15 -0.1 2,790,509 - Pf6N2E2_2357 0.15 -0.4 2,790,848 - Pf6N2E2_2357 0.47 -0.6 2,791,064 - Pf6N2E2_2357 0.67 -0.9 2,791,114 + Pf6N2E2_2357 0.72 -0.4 2,791,115 - Pf6N2E2_2357 0.72 -0.5 2,791,322 - +0.1 2,791,337 - -0.4 2,791,337 - -0.4 2,791,377 - +0.2 2,791,377 - -0.7 2,791,419 + -0.2 2,791,420 - +1.2 2,791,420 - -0.6 2,791,420 - +0.8 2,791,420 - +0.5 2,791,420 - -0.1 2,791,420 - -0.1 2,791,420 - -1.1 2,791,420 - +0.7 2,791,420 - +0.5 2,791,420 - -0.1 2,791,482 + -0.6 2,791,482 + +0.6 2,791,608 - +0.4 2,791,625 + -0.1 2,791,686 + +0.7 2,791,728 + +0.7 2,791,728 + +0.7 2,791,729 - -1.0 2,791,736 + +0.2 2,791,751 + -0.3 2,791,752 - +1.0 2,791,752 - -0.3 2,791,930 - -0.5 2,791,930 - -1.2 2,792,014 + -0.3 2,792,015 - +0.0 2,792,015 - +0.8 2,792,015 - +0.7 2,792,015 - +0.3 2,792,015 - +0.4 2,792,056 + +1.1 2,792,077 + +0.7 2,792,077 + +0.1 2,792,077 + +0.4 2,792,078 - +1.0 2,792,078 - +0.6 2,792,078 - +0.3 2,792,220 + -0.1 2,792,221 - +0.1 2,792,296 - Pf6N2E2_2358 0.16 +0.5 2,792,345 + Pf6N2E2_2358 0.20 +1.0 2,792,345 + Pf6N2E2_2358 0.20 +0.6
Or see this region's nucleotide sequence