Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1809 and Pf6N2E2_1810 are separated by 102 nucleotides Pf6N2E2_1810 and Pf6N2E2_1811 are separated by 9 nucleotides Pf6N2E2_1811 and Pf6N2E2_1812 are separated by 31 nucleotides
Pf6N2E2_1809 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 2,140,724 to 2,142,244
_1809
Pf6N2E2_1810 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 2,142,347 to 2,143,264
_1810
Pf6N2E2_1811 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 2,143,274 to 2,144,176
_1811
Pf6N2E2_1812 - peptide ABC transporter, ATP-binding protein, at 2,144,208 to 2,145,224
_1812
Position (kb)
2142
2143
2144 Strain fitness (log2 ratio)
-1
0
1 at 2141.488 kb on + strand, within Pf6N2E2_1809 at 2141.732 kb on + strand, within Pf6N2E2_1809 at 2141.733 kb on - strand, within Pf6N2E2_1809 at 2141.738 kb on + strand, within Pf6N2E2_1809 at 2142.155 kb on + strand at 2142.167 kb on + strand at 2142.243 kb on - strand at 2142.536 kb on + strand, within Pf6N2E2_1810 at 2142.536 kb on + strand, within Pf6N2E2_1810 at 2142.537 kb on - strand, within Pf6N2E2_1810 at 2142.537 kb on - strand, within Pf6N2E2_1810 at 2142.606 kb on - strand, within Pf6N2E2_1810 at 2142.953 kb on + strand, within Pf6N2E2_1810 at 2143.196 kb on + strand at 2143.196 kb on + strand at 2143.196 kb on + strand at 2143.196 kb on + strand at 2143.197 kb on - strand at 2143.271 kb on + strand at 2143.272 kb on - strand at 2143.272 kb on - strand at 2143.307 kb on + strand at 2143.436 kb on + strand, within Pf6N2E2_1811 at 2143.437 kb on - strand, within Pf6N2E2_1811 at 2143.508 kb on + strand, within Pf6N2E2_1811 at 2143.508 kb on + strand, within Pf6N2E2_1811 at 2143.508 kb on + strand, within Pf6N2E2_1811 at 2143.672 kb on + strand, within Pf6N2E2_1811 at 2143.680 kb on - strand, within Pf6N2E2_1811 at 2143.848 kb on - strand, within Pf6N2E2_1811 at 2144.055 kb on - strand, within Pf6N2E2_1811 at 2144.055 kb on - strand, within Pf6N2E2_1811 at 2144.055 kb on - strand, within Pf6N2E2_1811 at 2144.055 kb on - strand, within Pf6N2E2_1811 at 2144.055 kb on - strand, within Pf6N2E2_1811 at 2144.055 kb on - strand, within Pf6N2E2_1811 at 2144.190 kb on + strand at 2144.190 kb on + strand at 2144.190 kb on + strand at 2144.191 kb on - strand at 2144.191 kb on - strand at 2144.191 kb on - strand at 2144.194 kb on - strand at 2144.194 kb on - strand at 2144.194 kb on - strand at 2144.215 kb on + strand at 2144.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,141,488 + Pf6N2E2_1809 0.50 -0.6 2,141,732 + Pf6N2E2_1809 0.66 -0.3 2,141,733 - Pf6N2E2_1809 0.66 +1.1 2,141,738 + Pf6N2E2_1809 0.67 +0.2 2,142,155 + -1.2 2,142,167 + -0.5 2,142,243 - +0.2 2,142,536 + Pf6N2E2_1810 0.21 -1.2 2,142,536 + Pf6N2E2_1810 0.21 -1.0 2,142,537 - Pf6N2E2_1810 0.21 +0.2 2,142,537 - Pf6N2E2_1810 0.21 -0.7 2,142,606 - Pf6N2E2_1810 0.28 -0.4 2,142,953 + Pf6N2E2_1810 0.66 -0.6 2,143,196 + -0.6 2,143,196 + -0.8 2,143,196 + +0.5 2,143,196 + +0.6 2,143,197 - -1.6 2,143,271 + +0.3 2,143,272 - +0.6 2,143,272 - +0.6 2,143,307 + -1.2 2,143,436 + Pf6N2E2_1811 0.18 +0.1 2,143,437 - Pf6N2E2_1811 0.18 -0.4 2,143,508 + Pf6N2E2_1811 0.26 +0.8 2,143,508 + Pf6N2E2_1811 0.26 +0.1 2,143,508 + Pf6N2E2_1811 0.26 -0.4 2,143,672 + Pf6N2E2_1811 0.44 +0.9 2,143,680 - Pf6N2E2_1811 0.45 -0.2 2,143,848 - Pf6N2E2_1811 0.64 +0.5 2,144,055 - Pf6N2E2_1811 0.86 +0.8 2,144,055 - Pf6N2E2_1811 0.86 +0.6 2,144,055 - Pf6N2E2_1811 0.86 -0.2 2,144,055 - Pf6N2E2_1811 0.86 +0.6 2,144,055 - Pf6N2E2_1811 0.86 +0.4 2,144,055 - Pf6N2E2_1811 0.86 +0.3 2,144,190 + -0.5 2,144,190 + +0.2 2,144,190 + +0.1 2,144,191 - +0.8 2,144,191 - +0.4 2,144,191 - +1.3 2,144,194 - -1.0 2,144,194 - +1.2 2,144,194 - -0.7 2,144,215 + +0.1 2,144,216 - -1.1
Or see this region's nucleotide sequence