Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS30000

Experiment: Growth at pH9 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) Trisodium citrate
6,669,390	+		PFLU_RS29990	0.49	-2.7
6,669,390	+		PFLU_RS29990	0.49	+0.2
6,669,391	-		PFLU_RS29990	0.49	-1.5
6,669,415	+		PFLU_RS29990	0.55	-0.8
6,669,415	+		PFLU_RS29990	0.55	-2.6
6,669,416	-		PFLU_RS29990	0.55	+0.2
6,669,416	-		PFLU_RS29990	0.55	-2.2
6,669,549	+		PFLU_RS29990	0.87	-1.6
6,669,549	+		PFLU_RS29990	0.87	-0.1
6,669,549	+		PFLU_RS29990	0.87	+1.3
6,669,549	+		PFLU_RS29990	0.87	+1.1
6,669,549	+		PFLU_RS29990	0.87	+0.7
6,669,549	+		PFLU_RS29990	0.87	+0.3
6,669,549	+		PFLU_RS29990	0.87	-2.1
6,669,549	+		PFLU_RS29990	0.87	-1.1
6,669,550	-		PFLU_RS29990	0.87	-0.7
6,669,550	-		PFLU_RS29990	0.87	-1.2
6,669,552	-		PFLU_RS29990	0.88	+0.5
6,669,576	+				+1.4
6,669,576	+				-0.6
6,669,576	+				-2.2
6,669,576	+				-0.9
6,669,576	+				-0.5
6,669,576	+				-1.5
6,669,576	+				-2.9
6,669,576	+				+0.5
6,669,576	+				-2.3
6,669,576	+				+0.5
6,669,576	+				-1.8
6,669,577	-				+1.9
6,669,577	-				-2.2
6,669,577	-				-1.7
6,669,577	-				-1.4
6,669,577	-				-0.3
6,669,650	+				+1.3
6,669,651	-				+1.5
6,669,651	-				-0.9
6,669,716	+		PFLU_RS29995	0.21	-0.8
6,669,791	-		PFLU_RS29995	0.34	+0.1
6,670,010	+		PFLU_RS29995	0.73	+1.8
6,670,010	+		PFLU_RS29995	0.73	+0.6
6,670,010	+		PFLU_RS29995	0.73	+0.0
6,670,010	+		PFLU_RS29995	0.73	+2.9
6,670,010	+		PFLU_RS29995	0.73	-0.8
6,670,010	+		PFLU_RS29995	0.73	-0.7
6,670,010	+		PFLU_RS29995	0.73	+0.1
6,670,010	+		PFLU_RS29995	0.73	+0.3
6,670,011	-		PFLU_RS29995	0.73	+2.5
6,670,011	-		PFLU_RS29995	0.73	-1.5
6,670,011	-		PFLU_RS29995	0.73	+1.1
6,670,011	-		PFLU_RS29995	0.73	+0.7
6,670,011	-		PFLU_RS29995	0.73	-0.4
6,670,011	-		PFLU_RS29995	0.73	-0.3
6,670,011	-		PFLU_RS29995	0.73	-1.8
6,670,011	-		PFLU_RS29995	0.73	+0.4
6,670,011	-		PFLU_RS29995	0.73	-1.1
6,670,385	+		PFLU_RS30000	0.17	-1.9
6,670,385	+		PFLU_RS30000	0.17	-0.9
6,670,385	+		PFLU_RS30000	0.17	-1.1
6,670,417	+		PFLU_RS30000	0.19	+0.9
6,670,435	+		PFLU_RS30000	0.20	+1.7
6,670,456	+		PFLU_RS30000	0.22	-0.4
6,670,520	+		PFLU_RS30000	0.27	+0.8
6,670,520	+		PFLU_RS30000	0.27	-1.1
6,670,520	+		PFLU_RS30000	0.27	-1.0
6,670,520	+		PFLU_RS30000	0.27	-0.8
6,670,520	+		PFLU_RS30000	0.27	+2.6
6,670,520	+		PFLU_RS30000	0.27	-1.7
6,670,520	+		PFLU_RS30000	0.27	+0.5
6,670,520	+		PFLU_RS30000	0.27	+4.0
6,670,521	-		PFLU_RS30000	0.27	+0.5
6,670,627	+		PFLU_RS30000	0.35	+2.3
6,670,627	+		PFLU_RS30000	0.35	+0.9
6,670,627	+		PFLU_RS30000	0.35	-0.9
6,670,628	-		PFLU_RS30000	0.35	+1.6
6,670,628	-		PFLU_RS30000	0.35	+0.9
6,670,628	-		PFLU_RS30000	0.35	-0.9
6,670,628	-		PFLU_RS30000	0.35	+0.5
6,670,628	-		PFLU_RS30000	0.35	+1.3
6,670,705	+		PFLU_RS30000	0.41	-1.5
6,670,705	+		PFLU_RS30000	0.41	-0.1
6,670,706	-		PFLU_RS30000	0.41	-1.0
6,670,706	-		PFLU_RS30000	0.41	-1.9
6,670,706	-		PFLU_RS30000	0.41	+2.2
6,670,706	-		PFLU_RS30000	0.41	-2.3
6,670,706	-		PFLU_RS30000	0.41	-0.2
6,670,706	-		PFLU_RS30000	0.41	+0.3
6,670,706	-		PFLU_RS30000	0.41	+1.2
6,670,706	-		PFLU_RS30000	0.41	-0.9
6,670,706	-		PFLU_RS30000	0.41	-1.5
6,670,759	+		PFLU_RS30000	0.45	+0.2
6,670,759	+		PFLU_RS30000	0.45	+1.4
6,670,759	+		PFLU_RS30000	0.45	+3.7
6,670,759	+		PFLU_RS30000	0.45	-1.2
6,670,759	+		PFLU_RS30000	0.45	+1.7
6,670,760	-		PFLU_RS30000	0.45	+5.3
6,670,760	-		PFLU_RS30000	0.45	-1.5
6,670,760	-		PFLU_RS30000	0.45	-0.8
6,670,760	-		PFLU_RS30000	0.45	+0.7
6,670,760	-		PFLU_RS30000	0.45	+1.9
6,670,976	+		PFLU_RS30000	0.61	+0.1
6,670,976	+		PFLU_RS30000	0.61	-0.0
6,670,977	-		PFLU_RS30000	0.61	+0.1
6,670,977	-		PFLU_RS30000	0.61	-0.6
6,671,101	+		PFLU_RS30000	0.70	+0.9
6,671,101	+		PFLU_RS30000	0.70	-2.2
6,671,102	-		PFLU_RS30000	0.70	-1.1
6,671,102	-		PFLU_RS30000	0.70	-0.8
6,671,102	-		PFLU_RS30000	0.70	+0.7
6,671,102	-		PFLU_RS30000	0.70	-0.9
6,671,102	-		PFLU_RS30000	0.70	-1.5
6,671,148	+		PFLU_RS30000	0.74	-0.9
6,671,276	+		PFLU_RS30000	0.83	-0.1
6,671,276	+		PFLU_RS30000	0.83	+1.7
6,671,277	-		PFLU_RS30000	0.83	-0.2
6,671,277	-		PFLU_RS30000	0.83	-1.8
6,671,280	+		PFLU_RS30000	0.83	-0.7
6,671,280	+		PFLU_RS30000	0.83	-1.4
6,671,280	+		PFLU_RS30000	0.83	-1.0
6,671,281	-		PFLU_RS30000	0.84	-1.2
6,671,281	-		PFLU_RS30000	0.84	+1.4
6,671,281	-		PFLU_RS30000	0.84	-0.2
6,671,281	-		PFLU_RS30000	0.84	+0.9
6,671,291	+		PFLU_RS30000	0.84	-0.2
6,671,575	-		PFLU_RS30005	0.15	+1.6
6,671,634	+		PFLU_RS30005	0.26	+0.5
6,671,634	+		PFLU_RS30005	0.26	-0.9
6,671,634	+		PFLU_RS30005	0.26	+0.5
6,671,634	+		PFLU_RS30005	0.26	-1.8
6,671,715	+		PFLU_RS30005	0.42	+2.5
6,671,715	+		PFLU_RS30005	0.42	+1.5
6,671,715	+		PFLU_RS30005	0.42	-3.5
6,671,716	-		PFLU_RS30005	0.42	-1.3
6,671,716	-		PFLU_RS30005	0.42	-1.3
6,671,716	-		PFLU_RS30005	0.42	-0.9
6,671,910	+		PFLU_RS30005	0.79	-0.2
6,671,910	+		PFLU_RS30005	0.79	-0.7
6,671,910	+		PFLU_RS30005	0.79	+3.1
6,671,910	+		PFLU_RS30005	0.79	-0.1
6,671,910	+		PFLU_RS30005	0.79	-0.0
6,671,911	-		PFLU_RS30005	0.79	+3.9
6,671,911	-		PFLU_RS30005	0.79	-2.9
6,671,911	-		PFLU_RS30005	0.79	+1.4
6,671,911	-		PFLU_RS30005	0.79	+3.2
6,671,911	-		PFLU_RS30005	0.79	+2.0
6,671,911	-		PFLU_RS30005	0.79	-2.0
6,671,986	-				+1.0
6,671,986	-				-1.8
6,671,995	+				-1.6
6,671,995	+				+0.2
6,671,996	-				-0.3
6,672,082	+				+0.2
6,672,087	+				-1.5
6,672,118	-				-1.7
6,672,118	-				+1.8
6,672,118	-				-1.1
6,672,138	+				-1.9
6,672,179	+				+1.6
6,672,179	+				-1.7
6,672,179	+				+2.0
6,672,179	+				+0.9
6,672,179	+				+3.2
6,672,179	+				+1.2
6,672,180	-				-2.0
6,672,293	+		PFLU_RS30010	0.10	-0.6
6,672,294	-		PFLU_RS30010	0.10	+0.3
6,672,311	+		PFLU_RS30010	0.11	-2.3
6,672,344	+		PFLU_RS30010	0.14	-1.7
6,672,344	+		PFLU_RS30010	0.14	-0.9
6,672,344	+		PFLU_RS30010	0.14	-0.1
6,672,344	+		PFLU_RS30010	0.14	-2.0
6,672,344	+		PFLU_RS30010	0.14	-1.7
6,672,344	+		PFLU_RS30010	0.14	-0.4
6,672,345	-		PFLU_RS30010	0.14	-1.0
6,672,345	-		PFLU_RS30010	0.14	-0.2
6,672,345	-		PFLU_RS30010	0.14	+1.4
6,672,439	+		PFLU_RS30010	0.20	-1.7
6,672,439	+		PFLU_RS30010	0.20	-2.9
6,672,440	-		PFLU_RS30010	0.20	+2.4
6,672,440	-		PFLU_RS30010	0.20	-1.3
6,672,440	-		PFLU_RS30010	0.20	-1.5
6,672,440	-		PFLU_RS30010	0.20	-1.0
6,672,440	-		PFLU_RS30010	0.20	+2.3
6,672,440	-		PFLU_RS30010	0.20	+0.3
6,672,440	-		PFLU_RS30010	0.20	-2.2
6,672,452	+		PFLU_RS30010	0.21	-0.9
6,672,452	+		PFLU_RS30010	0.21	-0.6
6,672,453	-		PFLU_RS30010	0.21	-0.0
6,672,453	-		PFLU_RS30010	0.21	-2.6