Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27425

Experiment: Growth at pH9 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) Trisodium citrate
6,098,059	+				-1.2
6,098,059	+				+0.2
6,098,059	+				-1.6
6,098,060	-				+1.9
6,098,060	-				-1.8
6,098,060	-				+0.8
6,098,060	-				+1.4
6,098,060	-				-0.3
6,098,060	-				+4.7
6,098,060	-				+0.2
6,098,060	-				+0.5
6,098,102	+				-1.6
6,098,102	+				+1.0
6,098,102	+				+0.2
6,098,102	+				-2.1
6,098,102	+				+0.9
6,098,102	+				+1.1
6,098,102	+				+2.6
6,098,102	+				+0.7
6,098,103	-				-0.2
6,098,103	-				-1.3
6,098,103	-				-1.2
6,098,103	-				+2.8
6,098,103	-				+2.9
6,098,117	+				+0.3
6,098,131	+				-0.3
6,098,131	+				-1.0
6,098,131	+				-1.9
6,098,131	+				+0.6
6,098,132	-				-0.6
6,098,132	-				+4.9
6,098,157	+				+3.1
6,098,158	-				-0.8
6,098,158	-				+4.0
6,098,158	-				+0.2
6,098,241	-				-1.3
6,098,241	-				+2.7
6,098,257	+				-0.3
6,098,257	+				+2.0
6,098,257	+				-1.2
6,098,257	+				+0.7
6,098,257	+				-2.8
6,098,258	-				+1.9
6,098,317	+				-1.7
6,098,357	+				-1.3
6,098,357	+				-1.6
6,098,358	-				-2.4
6,098,358	-				-0.3
6,098,358	-				+2.9
6,098,358	-				-1.6
6,098,358	-				+1.2
6,098,385	+				-0.6
6,098,385	+				-1.4
6,098,386	-				+3.4
6,098,386	-				-0.7
6,098,591	+		PFLU_RS27420	0.41	-2.6
6,098,591	+		PFLU_RS27420	0.41	-2.3
6,098,591	+		PFLU_RS27420	0.41	-0.6
6,098,591	+		PFLU_RS27420	0.41	-1.0
6,098,592	-		PFLU_RS27420	0.41	-0.4
6,098,592	-		PFLU_RS27420	0.41	-1.2
6,098,660	+		PFLU_RS27420	0.52	-1.6
6,098,913	+				-0.4
6,098,913	+				-0.1
6,098,913	+				+1.0
6,098,913	+				+1.6
6,098,913	+				-2.9
6,098,913	+				-1.5
6,098,913	+				-0.1
6,098,913	+				+0.4
6,098,913	+				-1.0
6,098,914	-				-0.3
6,098,914	-				-2.8
6,098,914	-				-2.4
6,098,914	-				-2.2
6,098,914	-				+0.5
6,098,914	-				-1.0
6,098,945	-				-2.0
6,098,950	+				+1.2
6,098,950	+				+1.1
6,098,981	+				+3.0
6,098,981	+				-0.7
6,098,981	+				+0.2
6,098,981	+				-1.3
6,098,981	+				+1.7
6,098,981	+				-0.1
6,098,982	-				+1.2
6,098,982	-				-1.4
6,098,982	-				-1.0
6,098,982	-				-0.4
6,098,982	-				-1.6
6,099,154	+				-1.2
6,099,154	+				-1.6
6,099,192	+		PFLU_RS27425	0.11	+2.7
6,099,192	+		PFLU_RS27425	0.11	-1.2
6,099,192	+		PFLU_RS27425	0.11	+1.1
6,099,192	+		PFLU_RS27425	0.11	-1.6
6,099,193	-		PFLU_RS27425	0.11	-0.4
6,099,193	-		PFLU_RS27425	0.11	+1.0
6,099,193	-		PFLU_RS27425	0.11	+2.2
6,099,193	-		PFLU_RS27425	0.11	-0.1
6,099,485	+		PFLU_RS27425	0.25	-2.6
6,099,485	+		PFLU_RS27425	0.25	+4.2
6,099,485	+		PFLU_RS27425	0.25	+1.1
6,099,486	-		PFLU_RS27425	0.25	-1.2
6,099,486	-		PFLU_RS27425	0.25	+2.9
6,099,486	-		PFLU_RS27425	0.25	-0.3
6,099,486	-		PFLU_RS27425	0.25	+2.7
6,099,486	-		PFLU_RS27425	0.25	-2.7
6,099,486	-		PFLU_RS27425	0.25	-0.5
6,099,486	-		PFLU_RS27425	0.25	-1.5
6,099,486	-		PFLU_RS27425	0.25	-0.1
6,099,486	-		PFLU_RS27425	0.25	-2.0
6,099,486	-		PFLU_RS27425	0.25	-2.3
6,099,680	+		PFLU_RS27425	0.35	+0.5
6,099,680	+		PFLU_RS27425	0.35	+1.9
6,099,680	+		PFLU_RS27425	0.35	-2.3
6,099,680	+		PFLU_RS27425	0.35	-1.5
6,099,680	+		PFLU_RS27425	0.35	-2.2
6,099,680	+		PFLU_RS27425	0.35	+0.4
6,099,681	-		PFLU_RS27425	0.35	+1.7
6,099,681	-		PFLU_RS27425	0.35	-0.8
6,099,692	+		PFLU_RS27425	0.36	+2.9
6,099,693	-		PFLU_RS27425	0.36	-2.0
6,099,693	-		PFLU_RS27425	0.36	-0.4
6,099,693	-		PFLU_RS27425	0.36	+0.7
6,099,693	-		PFLU_RS27425	0.36	+0.1
6,099,693	-		PFLU_RS27425	0.36	-1.1
6,099,926	+		PFLU_RS27425	0.47	-0.3
6,100,000	+		PFLU_RS27425	0.51	+1.7
6,100,051	+		PFLU_RS27425	0.54	+0.9
6,100,051	+		PFLU_RS27425	0.54	+0.4
6,100,051	+		PFLU_RS27425	0.54	-2.5
6,100,178	+		PFLU_RS27425	0.60	+0.4
6,100,178	+		PFLU_RS27425	0.60	-1.6
6,100,178	+		PFLU_RS27425	0.60	-0.1
6,100,178	+		PFLU_RS27425	0.60	+0.2
6,100,179	-		PFLU_RS27425	0.60	-0.1
6,100,179	-		PFLU_RS27425	0.60	+1.7
6,100,179	-		PFLU_RS27425	0.60	+2.5
6,100,179	-		PFLU_RS27425	0.60	+0.8
6,100,179	-		PFLU_RS27425	0.60	+1.9
6,100,179	-		PFLU_RS27425	0.60	+0.0
6,100,284	+		PFLU_RS27425	0.65	-1.3
6,100,284	+		PFLU_RS27425	0.65	+1.4
6,100,284	+		PFLU_RS27425	0.65	+2.0
6,100,284	+		PFLU_RS27425	0.65	+2.0
6,100,285	-		PFLU_RS27425	0.65	+1.9
6,100,365	+		PFLU_RS27425	0.69	-1.5
6,100,365	+		PFLU_RS27425	0.69	-0.7
6,100,391	+		PFLU_RS27425	0.71	+0.1
6,100,466	+		PFLU_RS27425	0.74	+2.3
6,100,470	+		PFLU_RS27425	0.75	-1.6
6,100,470	+		PFLU_RS27425	0.75	+4.2
6,100,470	+		PFLU_RS27425	0.75	-1.5
6,100,470	+		PFLU_RS27425	0.75	-0.1
6,100,470	+		PFLU_RS27425	0.75	-1.0
6,100,470	+		PFLU_RS27425	0.75	-0.3
6,100,470	+		PFLU_RS27425	0.75	-1.3
6,100,471	-		PFLU_RS27425	0.75	-0.5
6,100,471	-		PFLU_RS27425	0.75	+0.7
6,100,471	-		PFLU_RS27425	0.75	-0.7
6,100,471	-		PFLU_RS27425	0.75	+1.9
6,100,471	-		PFLU_RS27425	0.75	-2.2
6,100,471	-		PFLU_RS27425	0.75	-1.3
6,100,471	-		PFLU_RS27425	0.75	-3.0
6,100,471	-		PFLU_RS27425	0.75	-2.2
6,100,471	-		PFLU_RS27425	0.75	-2.0
6,100,471	-		PFLU_RS27425	0.75	+2.6
6,100,481	+		PFLU_RS27425	0.75	-1.3
6,100,482	-		PFLU_RS27425	0.75	+1.3
6,100,482	-		PFLU_RS27425	0.75	-0.8
6,100,482	-		PFLU_RS27425	0.75	-0.4
6,100,482	-		PFLU_RS27425	0.75	-0.8
6,100,598	+		PFLU_RS27425	0.81	+2.4
6,100,598	+		PFLU_RS27425	0.81	-0.4
6,100,598	+		PFLU_RS27425	0.81	+1.6
6,100,598	+		PFLU_RS27425	0.81	+0.3
6,100,598	+		PFLU_RS27425	0.81	+0.2
6,100,598	+		PFLU_RS27425	0.81	+0.4
6,100,598	+		PFLU_RS27425	0.81	+1.7
6,100,598	+		PFLU_RS27425	0.81	+2.0
6,100,598	+		PFLU_RS27425	0.81	-0.6
6,100,598	+		PFLU_RS27425	0.81	+1.4
6,100,599	-		PFLU_RS27425	0.81	+3.3
6,100,599	-		PFLU_RS27425	0.81	-0.7
6,100,599	-		PFLU_RS27425	0.81	-1.7
6,100,678	+		PFLU_RS27425	0.85	-2.0
6,100,678	+		PFLU_RS27425	0.85	-1.3
6,100,679	-		PFLU_RS27425	0.85	+0.9
6,100,802	+				+0.4
6,100,802	+				+0.9
6,100,802	+				+0.3
6,100,802	+				+0.4
6,100,803	-				-2.1
6,100,803	-				-0.3
6,100,812	-				-1.6
6,101,001	+				-0.4
6,101,001	+				+0.3
6,101,001	+				-1.3
6,101,001	+				+4.0
6,101,001	+				+1.7
6,101,001	+				-1.4
6,101,001	+				-2.3
6,101,001	+				-1.1
6,101,001	+				-2.5
6,101,001	+				+1.2
6,101,001	+				+1.4
6,101,001	+				+0.7
6,101,001	+				-0.4
6,101,002	-				+2.3
6,101,002	-				-1.2
6,101,002	-				+1.7
6,101,002	-				+0.7
6,101,002	-				-0.4
6,101,002	-				+1.0
6,101,016	+				-0.4
6,101,016	+				+0.8
6,101,016	+				+0.4
6,101,017	-				+0.9
6,101,017	-				+2.7
6,101,017	-				-1.7
6,101,047	+				-0.2
6,101,047	+				-0.4
6,101,047	+				+0.4
6,101,047	+				+3.0
6,101,048	-				+0.2
6,101,048	-				-0.9
6,101,102	+				-0.8
6,101,102	+				-2.2
6,101,102	+				+1.5
6,101,102	+				+0.4
6,101,102	+				+1.7
6,101,102	+				-1.3
6,101,102	+				-2.8
6,101,102	+				+1.0
6,101,102	+				+0.6
6,101,102	+				-1.6
6,101,103	-				+2.3
6,101,103	-				+0.7
6,101,103	-				-0.1
6,101,103	-				-0.6
6,101,103	-				+0.1
6,101,103	-				-0.9
6,101,103	-				+1.1
6,101,103	-				+3.5
6,101,103	-				+1.6
6,101,103	-				+3.1
6,101,105	+				+3.7
6,101,106	-				-0.6
6,101,106	-				-2.1
6,101,106	-				+3.6
6,101,106	-				-1.8
6,101,122	+				+2.5
6,101,123	-				-0.8
6,101,220	-		PFLU_RS27430	0.17	+0.9
6,101,220	-		PFLU_RS27430	0.17	+0.7
6,101,264	+		PFLU_RS27430	0.22	-2.3
6,101,264	+		PFLU_RS27430	0.22	-1.6
6,101,264	+		PFLU_RS27430	0.22	-1.1
6,101,264	+		PFLU_RS27430	0.22	+2.0
6,101,321	+		PFLU_RS27430	0.28	-0.8
6,101,321	+		PFLU_RS27430	0.28	+0.6
6,101,322	-		PFLU_RS27430	0.28	-1.8
6,101,437	+		PFLU_RS27430	0.39	+1.2
6,101,437	+		PFLU_RS27430	0.39	-0.5
6,101,437	+		PFLU_RS27430	0.39	+1.3
6,101,437	+		PFLU_RS27430	0.39	-0.1
6,101,437	+		PFLU_RS27430	0.39	-1.0
6,101,437	+		PFLU_RS27430	0.39	+0.4
6,101,437	+		PFLU_RS27430	0.39	+1.2
6,101,437	+		PFLU_RS27430	0.39	-0.8
6,101,437	+		PFLU_RS27430	0.39	-0.6
6,101,437	+		PFLU_RS27430	0.39	-2.2
6,101,437	+		PFLU_RS27430	0.39	+1.0
6,101,437	+		PFLU_RS27430	0.39	+0.2
6,101,438	-		PFLU_RS27430	0.40	-1.3
6,101,438	-		PFLU_RS27430	0.40	-0.4
6,101,438	-		PFLU_RS27430	0.40	-0.2
6,101,438	-		PFLU_RS27430	0.40	-2.8
6,101,438	-		PFLU_RS27430	0.40	-2.3
6,101,438	-		PFLU_RS27430	0.40	-2.3
6,101,438	-		PFLU_RS27430	0.40	+0.2
6,101,438	-		PFLU_RS27430	0.40	+1.6
6,101,438	-		PFLU_RS27430	0.40	-2.5
6,101,438	-		PFLU_RS27430	0.40	+0.2
6,101,438	-		PFLU_RS27430	0.40	+0.4
6,101,438	-		PFLU_RS27430	0.40	-0.1
6,101,438	-		PFLU_RS27430	0.40	-0.7
6,101,438	-		PFLU_RS27430	0.40	-1.0
6,101,438	-		PFLU_RS27430	0.40	+4.5
6,101,438	-		PFLU_RS27430	0.40	-0.7
6,101,438	-		PFLU_RS27430	0.40	+2.7
6,101,441	+		PFLU_RS27430	0.40	-1.8
6,101,441	+		PFLU_RS27430	0.40	-1.3
6,101,441	+		PFLU_RS27430	0.40	+4.1
6,101,441	+		PFLU_RS27430	0.40	+0.9
6,101,441	+		PFLU_RS27430	0.40	+3.1
6,101,442	-		PFLU_RS27430	0.40	-1.0
6,101,442	-		PFLU_RS27430	0.40	-0.6
6,101,442	-		PFLU_RS27430	0.40	+2.9
6,101,442	-		PFLU_RS27430	0.40	-1.3
6,101,442	-		PFLU_RS27430	0.40	-0.4
6,101,442	-		PFLU_RS27430	0.40	+0.7
6,101,442	-		PFLU_RS27430	0.40	+2.5
6,101,442	-		PFLU_RS27430	0.40	-1.3
6,101,495	+		PFLU_RS27430	0.45	-0.8
6,101,495	+		PFLU_RS27430	0.45	-2.2
6,101,495	+		PFLU_RS27430	0.45	-1.2
6,101,495	+		PFLU_RS27430	0.45	+0.4
6,101,495	+		PFLU_RS27430	0.45	-0.1
6,101,496	-		PFLU_RS27430	0.46	-1.4
6,101,496	-		PFLU_RS27430	0.46	-0.4
6,101,496	-		PFLU_RS27430	0.46	-1.0
6,101,715	+		PFLU_RS27430	0.68	-2.7
6,101,715	+		PFLU_RS27430	0.68	+1.3
6,101,715	+		PFLU_RS27430	0.68	+2.4
6,101,715	+		PFLU_RS27430	0.68	+0.4
6,101,715	+		PFLU_RS27430	0.68	+2.4
6,101,715	+		PFLU_RS27430	0.68	-1.1
6,101,715	+		PFLU_RS27430	0.68	-0.2
6,101,715	+		PFLU_RS27430	0.68	-0.7
6,101,715	+		PFLU_RS27430	0.68	-0.3
6,101,715	+		PFLU_RS27430	0.68	-0.4
6,101,715	+		PFLU_RS27430	0.68	-0.3
6,101,715	+		PFLU_RS27430	0.68	+0.6
6,101,715	+		PFLU_RS27430	0.68	+0.9
6,101,715	+		PFLU_RS27430	0.68	-1.1
6,101,715	+		PFLU_RS27430	0.68	-0.7
6,101,716	-		PFLU_RS27430	0.68	+2.4
6,101,716	-		PFLU_RS27430	0.68	+0.2
6,101,716	-		PFLU_RS27430	0.68	-0.6
6,101,716	-		PFLU_RS27430	0.68	+3.4
6,101,716	-		PFLU_RS27430	0.68	+0.3
6,101,716	-		PFLU_RS27430	0.68	+3.9
6,101,716	-		PFLU_RS27430	0.68	-0.3
6,101,716	-		PFLU_RS27430	0.68	-1.6
6,101,716	-		PFLU_RS27430	0.68	-1.8
6,101,716	-		PFLU_RS27430	0.68	-1.0
6,101,716	-		PFLU_RS27430	0.68	+1.7
6,101,716	-		PFLU_RS27430	0.68	+1.2
6,101,844	+		PFLU_RS27430	0.81	+0.3
6,101,844	+		PFLU_RS27430	0.81	+3.2
6,101,844	+		PFLU_RS27430	0.81	-1.1
6,101,844	+		PFLU_RS27430	0.81	-0.1
6,101,844	+		PFLU_RS27430	0.81	+0.3
6,101,844	+		PFLU_RS27430	0.81	+0.9
6,101,844	+		PFLU_RS27430	0.81	-0.4
6,101,844	+		PFLU_RS27430	0.81	-2.7
6,101,844	+		PFLU_RS27430	0.81	+2.1
6,101,844	+		PFLU_RS27430	0.81	-1.2
6,101,845	-		PFLU_RS27430	0.81	+2.8
6,101,845	-		PFLU_RS27430	0.81	+3.3
6,101,845	-		PFLU_RS27430	0.81	-0.1
6,101,845	-		PFLU_RS27430	0.81	-0.7
6,101,845	-		PFLU_RS27430	0.81	+0.8
6,101,845	-		PFLU_RS27430	0.81	-2.0
6,101,845	-		PFLU_RS27430	0.81	-1.7
6,101,845	-		PFLU_RS27430	0.81	-1.7
6,101,919	+		PFLU_RS27430	0.89	+1.5
6,101,919	+		PFLU_RS27430	0.89	+1.7
6,101,920	-		PFLU_RS27430	0.89	+2.7
6,101,920	-		PFLU_RS27430	0.89	-1.5
6,101,920	-		PFLU_RS27430	0.89	+1.6
6,101,920	-		PFLU_RS27430	0.89	-1.4
6,101,920	-		PFLU_RS27430	0.89	+1.9
6,101,921	+		PFLU_RS27430	0.89	-1.7
6,101,921	+		PFLU_RS27430	0.89	-1.3
6,101,921	+		PFLU_RS27430	0.89	+0.4
6,101,921	+		PFLU_RS27430	0.89	+2.3
6,101,921	+		PFLU_RS27430	0.89	-1.4
6,101,922	-		PFLU_RS27430	0.89	-2.1
6,101,922	-		PFLU_RS27430	0.89	-1.5
6,101,922	-		PFLU_RS27430	0.89	+0.7