Experiment: Growth at pH9 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS26850 and PFLU_RS26855 are separated by 19 nucleotides PFLU_RS26855 and PFLU_RS26860 overlap by 4 nucleotides PFLU_RS26860 and PFLU_RS26865 overlap by 4 nucleotides PFLU_RS26865 and PFLU_RS26870 are separated by 129 nucleotides
PFLU_RS26850: PFLU_RS26850 - TonB-dependent receptor, at 5,994,335 to 5,996,230
_RS26850
PFLU_RS26855: PFLU_RS26855 - cobalamin-binding protein, at 5,996,250 to 5,997,038
_RS26855
PFLU_RS26860: PFLU_RS26860 - nuclear fragile X mental retardation-interacting protein 1, at 5,997,035 to 5,997,454
_RS26860
PFLU_RS26865: PFLU_RS26865 - GTP cyclohydrolase II, at 5,997,451 to 5,998,068
_RS26865
PFLU_RS26870: PFLU_RS26870 - transporter substrate-binding domain-containing protein, at 5,998,198 to 5,998,926
_RS26870
Position (kb) 5997
5998 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5996.120 kb on + strand at 5996.120 kb on + strand at 5996.120 kb on + strand at 5996.135 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.141 kb on + strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.142 kb on - strand at 5996.160 kb on + strand at 5996.420 kb on + strand, within PFLU_RS26855 at 5996.539 kb on + strand, within PFLU_RS26855 at 5996.539 kb on + strand, within PFLU_RS26855 at 5996.540 kb on - strand, within PFLU_RS26855 at 5996.540 kb on - strand, within PFLU_RS26855 at 5996.540 kb on - strand, within PFLU_RS26855 at 5996.540 kb on - strand, within PFLU_RS26855 at 5996.540 kb on - strand, within PFLU_RS26855 at 5996.563 kb on + strand, within PFLU_RS26855 at 5996.564 kb on - strand, within PFLU_RS26855 at 5996.564 kb on - strand, within PFLU_RS26855 at 5996.564 kb on - strand, within PFLU_RS26855 at 5996.564 kb on - strand, within PFLU_RS26855 at 5996.728 kb on + strand, within PFLU_RS26855 at 5996.728 kb on + strand, within PFLU_RS26855 at 5996.728 kb on + strand, within PFLU_RS26855 at 5996.728 kb on + strand, within PFLU_RS26855 at 5996.728 kb on + strand, within PFLU_RS26855 at 5996.728 kb on + strand, within PFLU_RS26855 at 5996.728 kb on + strand, within PFLU_RS26855 at 5996.728 kb on + strand, within PFLU_RS26855 at 5996.729 kb on - strand, within PFLU_RS26855 at 5996.729 kb on - strand, within PFLU_RS26855 at 5996.729 kb on - strand, within PFLU_RS26855 at 5996.738 kb on + strand, within PFLU_RS26855 at 5997.061 kb on - strand at 5997.066 kb on + strand at 5997.066 kb on + strand at 5997.066 kb on + strand at 5997.066 kb on + strand at 5997.066 kb on + strand at 5997.066 kb on + strand at 5997.066 kb on + strand at 5997.066 kb on + strand at 5997.066 kb on + strand at 5997.066 kb on + strand at 5997.066 kb on + strand at 5997.066 kb on + strand at 5997.066 kb on + strand at 5997.067 kb on - strand at 5997.067 kb on - strand at 5997.067 kb on - strand at 5997.067 kb on - strand at 5997.067 kb on - strand at 5997.067 kb on - strand at 5997.067 kb on - strand at 5997.067 kb on - strand at 5997.067 kb on - strand at 5997.067 kb on - strand at 5997.067 kb on - strand at 5997.067 kb on - strand at 5997.067 kb on - strand at 5997.226 kb on + strand, within PFLU_RS26860 at 5997.226 kb on + strand, within PFLU_RS26860 at 5997.227 kb on - strand, within PFLU_RS26860 at 5997.227 kb on - strand, within PFLU_RS26860 at 5997.262 kb on + strand, within PFLU_RS26860 at 5997.262 kb on + strand, within PFLU_RS26860 at 5997.262 kb on + strand, within PFLU_RS26860 at 5997.262 kb on + strand, within PFLU_RS26860 at 5997.262 kb on + strand, within PFLU_RS26860 at 5997.262 kb on + strand, within PFLU_RS26860 at 5997.262 kb on + strand, within PFLU_RS26860 at 5997.262 kb on + strand, within PFLU_RS26860 at 5997.263 kb on - strand, within PFLU_RS26860 at 5997.263 kb on - strand, within PFLU_RS26860 at 5997.263 kb on - strand, within PFLU_RS26860 at 5997.263 kb on - strand, within PFLU_RS26860 at 5997.265 kb on - strand, within PFLU_RS26860 at 5997.405 kb on + strand, within PFLU_RS26860 at 5997.405 kb on + strand, within PFLU_RS26860 at 5997.405 kb on + strand, within PFLU_RS26860 at 5997.405 kb on + strand, within PFLU_RS26860 at 5997.405 kb on + strand, within PFLU_RS26860 at 5997.406 kb on - strand, within PFLU_RS26860 at 5997.406 kb on - strand, within PFLU_RS26860 at 5997.484 kb on - strand at 5998.109 kb on + strand at 5998.109 kb on + strand at 5998.109 kb on + strand at 5998.109 kb on + strand at 5998.109 kb on + strand at 5998.109 kb on + strand at 5998.109 kb on + strand at 5998.109 kb on + strand at 5998.109 kb on + strand at 5998.109 kb on + strand at 5998.109 kb on + strand at 5998.109 kb on + strand at 5998.110 kb on - strand at 5998.110 kb on - strand at 5998.110 kb on - strand at 5998.110 kb on - strand at 5998.110 kb on - strand at 5998.110 kb on - strand at 5998.110 kb on - strand at 5998.110 kb on - strand at 5998.110 kb on - strand at 5998.110 kb on - strand at 5998.110 kb on - strand at 5998.110 kb on - strand at 5998.123 kb on + strand at 5998.123 kb on + strand at 5998.123 kb on + strand at 5998.123 kb on + strand at 5998.123 kb on + strand at 5998.123 kb on + strand at 5998.124 kb on - strand at 5998.124 kb on - strand at 5998.124 kb on - strand at 5998.124 kb on - strand at 5998.133 kb on + strand at 5998.133 kb on + strand at 5998.133 kb on + strand at 5998.133 kb on + strand at 5998.133 kb on + strand at 5998.134 kb on - strand at 5998.134 kb on - strand at 5998.143 kb on + strand at 5998.143 kb on + strand at 5998.144 kb on - strand at 5998.152 kb on + strand at 5998.152 kb on + strand at 5998.153 kb on - strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.190 kb on + strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.191 kb on - strand at 5998.199 kb on + strand at 5998.200 kb on - strand at 5998.200 kb on - strand at 5998.255 kb on + strand at 5998.255 kb on + strand at 5998.256 kb on - strand at 5998.259 kb on - strand at 5998.270 kb on - strand at 5998.270 kb on - strand at 5998.317 kb on + strand, within PFLU_RS26870 at 5998.328 kb on + strand, within PFLU_RS26870 at 5998.328 kb on + strand, within PFLU_RS26870 at 5998.328 kb on + strand, within PFLU_RS26870 at 5998.328 kb on + strand, within PFLU_RS26870 at 5998.329 kb on - strand, within PFLU_RS26870 at 5998.329 kb on - strand, within PFLU_RS26870 at 5998.329 kb on - strand, within PFLU_RS26870 at 5998.329 kb on - strand, within PFLU_RS26870 at 5998.359 kb on + strand, within PFLU_RS26870 at 5998.359 kb on + strand, within PFLU_RS26870 at 5998.359 kb on + strand, within PFLU_RS26870 at 5998.359 kb on + strand, within PFLU_RS26870 at 5998.360 kb on - strand, within PFLU_RS26870 at 5998.360 kb on - strand, within PFLU_RS26870 at 5998.360 kb on - strand, within PFLU_RS26870 at 5998.360 kb on - strand, within PFLU_RS26870 at 5998.360 kb on - strand, within PFLU_RS26870 at 5998.360 kb on - strand, within PFLU_RS26870 at 5998.390 kb on + strand, within PFLU_RS26870 at 5998.391 kb on - strand, within PFLU_RS26870 at 5998.419 kb on + strand, within PFLU_RS26870 at 5998.419 kb on + strand, within PFLU_RS26870 at 5998.420 kb on - strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.421 kb on + strand, within PFLU_RS26870 at 5998.422 kb on - strand, within PFLU_RS26870 at 5998.422 kb on - strand, within PFLU_RS26870 at 5998.422 kb on - strand, within PFLU_RS26870 at 5998.422 kb on - strand, within PFLU_RS26870 at 5998.422 kb on - strand, within PFLU_RS26870
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate remove 5,996,120 + +2.5 5,996,120 + +1.8 5,996,120 + +5.2 5,996,135 + +0.8 5,996,141 + -0.5 5,996,141 + +0.4 5,996,141 + +3.0 5,996,141 + -1.3 5,996,141 + -2.4 5,996,141 + +1.9 5,996,141 + -0.8 5,996,141 + +0.3 5,996,141 + -1.6 5,996,141 + +1.1 5,996,141 + -0.8 5,996,141 + -2.1 5,996,141 + -1.5 5,996,141 + +1.6 5,996,141 + +2.7 5,996,141 + +2.5 5,996,141 + -0.6 5,996,142 - +0.8 5,996,142 - +0.3 5,996,142 - -0.1 5,996,142 - +2.3 5,996,142 - +0.4 5,996,142 - -2.4 5,996,142 - -0.6 5,996,142 - -1.0 5,996,142 - +1.5 5,996,142 - +1.4 5,996,142 - -0.8 5,996,142 - +0.2 5,996,142 - +1.5 5,996,142 - +0.1 5,996,142 - +0.4 5,996,142 - +1.0 5,996,160 + -0.8 5,996,420 + PFLU_RS26855 0.22 -0.4 5,996,539 + PFLU_RS26855 0.37 -0.0 5,996,539 + PFLU_RS26855 0.37 +2.5 5,996,540 - PFLU_RS26855 0.37 +1.8 5,996,540 - PFLU_RS26855 0.37 +1.0 5,996,540 - PFLU_RS26855 0.37 -2.7 5,996,540 - PFLU_RS26855 0.37 -2.0 5,996,540 - PFLU_RS26855 0.37 +1.5 5,996,563 + PFLU_RS26855 0.40 +3.4 5,996,564 - PFLU_RS26855 0.40 +0.9 5,996,564 - PFLU_RS26855 0.40 -0.4 5,996,564 - PFLU_RS26855 0.40 -1.6 5,996,564 - PFLU_RS26855 0.40 +2.8 5,996,728 + PFLU_RS26855 0.61 -1.2 5,996,728 + PFLU_RS26855 0.61 -0.5 5,996,728 + PFLU_RS26855 0.61 +2.0 5,996,728 + PFLU_RS26855 0.61 -2.4 5,996,728 + PFLU_RS26855 0.61 +1.7 5,996,728 + PFLU_RS26855 0.61 -0.9 5,996,728 + PFLU_RS26855 0.61 -2.4 5,996,728 + PFLU_RS26855 0.61 +1.3 5,996,729 - PFLU_RS26855 0.61 -0.4 5,996,729 - PFLU_RS26855 0.61 +2.7 5,996,729 - PFLU_RS26855 0.61 +1.8 5,996,738 + PFLU_RS26855 0.62 +1.8 5,997,061 - -1.1 5,997,066 + -2.8 5,997,066 + +2.8 5,997,066 + +0.1 5,997,066 + -1.6 5,997,066 + -0.2 5,997,066 + -1.1 5,997,066 + -0.2 5,997,066 + -1.6 5,997,066 + +0.9 5,997,066 + +1.0 5,997,066 + +2.2 5,997,066 + -1.7 5,997,066 + -1.3 5,997,067 - +3.1 5,997,067 - +0.4 5,997,067 - -0.2 5,997,067 - +2.8 5,997,067 - -1.8 5,997,067 - +0.2 5,997,067 - -1.9 5,997,067 - +0.5 5,997,067 - -0.1 5,997,067 - -0.6 5,997,067 - +2.9 5,997,067 - +1.2 5,997,067 - +0.3 5,997,226 + PFLU_RS26860 0.45 +2.1 5,997,226 + PFLU_RS26860 0.45 -1.8 5,997,227 - PFLU_RS26860 0.46 +2.7 5,997,227 - PFLU_RS26860 0.46 -1.8 5,997,262 + PFLU_RS26860 0.54 +2.3 5,997,262 + PFLU_RS26860 0.54 +3.7 5,997,262 + PFLU_RS26860 0.54 +0.8 5,997,262 + PFLU_RS26860 0.54 -0.0 5,997,262 + PFLU_RS26860 0.54 -0.8 5,997,262 + PFLU_RS26860 0.54 -1.9 5,997,262 + PFLU_RS26860 0.54 -2.0 5,997,262 + PFLU_RS26860 0.54 -2.5 5,997,263 - PFLU_RS26860 0.54 +0.8 5,997,263 - PFLU_RS26860 0.54 +0.7 5,997,263 - PFLU_RS26860 0.54 +0.8 5,997,263 - PFLU_RS26860 0.54 +0.3 5,997,265 - PFLU_RS26860 0.55 +3.5 5,997,405 + PFLU_RS26860 0.88 -2.2 5,997,405 + PFLU_RS26860 0.88 +1.8 5,997,405 + PFLU_RS26860 0.88 +0.7 5,997,405 + PFLU_RS26860 0.88 +1.2 5,997,405 + PFLU_RS26860 0.88 -1.2 5,997,406 - PFLU_RS26860 0.88 +0.1 5,997,406 - PFLU_RS26860 0.88 -1.9 5,997,484 - +2.0 5,998,109 + -1.1 5,998,109 + +2.2 5,998,109 + +1.8 5,998,109 + +3.8 5,998,109 + +0.4 5,998,109 + +0.8 5,998,109 + +1.3 5,998,109 + -1.0 5,998,109 + +1.8 5,998,109 + +3.0 5,998,109 + +0.9 5,998,109 + +1.2 5,998,110 - -0.2 5,998,110 - +3.6 5,998,110 - -0.0 5,998,110 - +1.0 5,998,110 - +1.8 5,998,110 - -1.1 5,998,110 - +0.8 5,998,110 - +0.2 5,998,110 - -1.0 5,998,110 - +0.5 5,998,110 - +0.9 5,998,110 - -0.2 5,998,123 + -2.4 5,998,123 + +1.4 5,998,123 + -2.7 5,998,123 + +0.3 5,998,123 + -2.4 5,998,123 + -0.4 5,998,124 - -1.7 5,998,124 - -2.1 5,998,124 - +1.1 5,998,124 - +2.4 5,998,133 + -1.8 5,998,133 + +2.8 5,998,133 + +2.2 5,998,133 + +0.3 5,998,133 + -1.4 5,998,134 - +2.7 5,998,134 - -1.1 5,998,143 + +1.6 5,998,143 + -2.0 5,998,144 - -1.4 5,998,152 + -1.1 5,998,152 + -1.1 5,998,153 - -1.4 5,998,190 + -0.3 5,998,190 + -0.7 5,998,190 + +1.8 5,998,190 + -1.0 5,998,190 + -0.1 5,998,190 + -0.2 5,998,190 + -0.1 5,998,190 + -1.4 5,998,190 + -0.4 5,998,190 + +0.2 5,998,190 + -1.9 5,998,190 + -0.6 5,998,190 + +2.2 5,998,190 + -1.9 5,998,190 + +0.6 5,998,190 + +2.9 5,998,190 + +3.0 5,998,191 - +2.3 5,998,191 - +0.9 5,998,191 - -2.0 5,998,191 - -0.9 5,998,191 - -0.4 5,998,191 - -0.4 5,998,191 - +1.7 5,998,191 - +2.3 5,998,191 - +4.3 5,998,191 - +0.4 5,998,191 - -2.0 5,998,191 - +2.8 5,998,191 - +2.5 5,998,191 - -0.3 5,998,191 - -0.8 5,998,191 - -1.5 5,998,191 - -0.3 5,998,199 + +3.6 5,998,200 - +0.5 5,998,200 - +3.3 5,998,255 + +0.3 5,998,255 + +1.0 5,998,256 - -1.6 5,998,259 - +1.5 5,998,270 - +0.2 5,998,270 - +0.8 5,998,317 + PFLU_RS26870 0.16 +0.6 5,998,328 + PFLU_RS26870 0.18 -0.7 5,998,328 + PFLU_RS26870 0.18 +1.0 5,998,328 + PFLU_RS26870 0.18 -0.6 5,998,328 + PFLU_RS26870 0.18 +1.5 5,998,329 - PFLU_RS26870 0.18 -0.2 5,998,329 - PFLU_RS26870 0.18 +0.8 5,998,329 - PFLU_RS26870 0.18 +0.8 5,998,329 - PFLU_RS26870 0.18 -1.5 5,998,359 + PFLU_RS26870 0.22 -1.4 5,998,359 + PFLU_RS26870 0.22 +1.1 5,998,359 + PFLU_RS26870 0.22 +0.9 5,998,359 + PFLU_RS26870 0.22 -1.9 5,998,360 - PFLU_RS26870 0.22 +3.9 5,998,360 - PFLU_RS26870 0.22 +1.9 5,998,360 - PFLU_RS26870 0.22 +1.6 5,998,360 - PFLU_RS26870 0.22 -2.5 5,998,360 - PFLU_RS26870 0.22 -0.6 5,998,360 - PFLU_RS26870 0.22 -0.6 5,998,390 + PFLU_RS26870 0.26 +1.2 5,998,391 - PFLU_RS26870 0.26 +3.6 5,998,419 + PFLU_RS26870 0.30 -2.6 5,998,419 + PFLU_RS26870 0.30 +0.4 5,998,420 - PFLU_RS26870 0.30 -0.4 5,998,421 + PFLU_RS26870 0.31 -1.0 5,998,421 + PFLU_RS26870 0.31 -2.2 5,998,421 + PFLU_RS26870 0.31 -0.7 5,998,421 + PFLU_RS26870 0.31 +0.1 5,998,421 + PFLU_RS26870 0.31 -2.0 5,998,421 + PFLU_RS26870 0.31 -0.0 5,998,421 + PFLU_RS26870 0.31 -0.6 5,998,421 + PFLU_RS26870 0.31 +2.3 5,998,421 + PFLU_RS26870 0.31 -0.9 5,998,421 + PFLU_RS26870 0.31 +2.6 5,998,421 + PFLU_RS26870 0.31 +1.9 5,998,421 + PFLU_RS26870 0.31 +1.2 5,998,421 + PFLU_RS26870 0.31 +2.1 5,998,421 + PFLU_RS26870 0.31 -1.9 5,998,422 - PFLU_RS26870 0.31 -1.0 5,998,422 - PFLU_RS26870 0.31 -1.1 5,998,422 - PFLU_RS26870 0.31 +1.0 5,998,422 - PFLU_RS26870 0.31 -1.9 5,998,422 - PFLU_RS26870 0.31 -0.2
Or see this region's nucleotide sequence