Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS23140

Experiment: Growth at pH9 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) Trisodium citrate
5,197,976	+		PFLU_RS23130	0.21	+1.0
5,197,977	-		PFLU_RS23130	0.21	-0.9
5,198,033	+		PFLU_RS23130	0.29	-0.5
5,198,033	+		PFLU_RS23130	0.29	+3.1
5,198,034	-		PFLU_RS23130	0.29	-0.3
5,198,034	-		PFLU_RS23130	0.29	-2.2
5,198,034	-		PFLU_RS23130	0.29	-2.0
5,198,049	-		PFLU_RS23130	0.32	-0.2
5,198,049	-		PFLU_RS23130	0.32	-0.1
5,198,055	-		PFLU_RS23130	0.33	-0.3
5,198,055	-		PFLU_RS23130	0.33	-2.9
5,198,055	-		PFLU_RS23130	0.33	-3.4
5,198,219	+		PFLU_RS23130	0.57	-3.9
5,198,219	+		PFLU_RS23130	0.57	-2.9
5,198,219	+		PFLU_RS23130	0.57	+0.4
5,198,219	+		PFLU_RS23130	0.57	-0.3
5,198,219	+		PFLU_RS23130	0.57	-2.3
5,198,219	+		PFLU_RS23130	0.57	+1.3
5,198,219	+		PFLU_RS23130	0.57	-0.9
5,198,219	+		PFLU_RS23130	0.57	-1.6
5,198,219	+		PFLU_RS23130	0.57	-1.2
5,198,219	+		PFLU_RS23130	0.57	-2.0
5,198,219	+		PFLU_RS23130	0.57	+0.1
5,198,219	+		PFLU_RS23130	0.57	-0.8
5,198,220	-		PFLU_RS23130	0.57	+0.3
5,198,220	-		PFLU_RS23130	0.57	-2.4
5,198,220	-		PFLU_RS23130	0.57	-2.1
5,198,311	-		PFLU_RS23130	0.70	-2.2
5,198,400	-		PFLU_RS23130	0.83	-1.9
5,198,511	+				-2.3
5,198,550	+				+1.3
5,198,550	+				-0.7
5,198,550	+				-3.0
5,198,551	-				-1.4
5,198,551	-				-2.4
5,198,551	-				-0.9
5,198,551	-				+2.0
5,198,555	+				-1.1
5,198,556	-				-1.4
5,198,586	+		PFLU_RS23135	0.18	-0.5
5,198,586	+		PFLU_RS23135	0.18	+1.7
5,198,586	+		PFLU_RS23135	0.18	+1.3
5,198,586	+		PFLU_RS23135	0.18	+2.0
5,198,586	+		PFLU_RS23135	0.18	-2.0
5,198,586	+		PFLU_RS23135	0.18	-0.3
5,198,587	-		PFLU_RS23135	0.18	-0.3
5,198,587	-		PFLU_RS23135	0.18	+1.4
5,198,587	-		PFLU_RS23135	0.18	+1.1
5,198,587	-		PFLU_RS23135	0.18	-2.4
5,198,587	-		PFLU_RS23135	0.18	-2.3
5,198,590	-		PFLU_RS23135	0.19	-2.1
5,198,590	-		PFLU_RS23135	0.19	-2.3
5,198,590	-		PFLU_RS23135	0.19	-1.2
5,198,618	+		PFLU_RS23135	0.28	+1.1
5,198,618	+		PFLU_RS23135	0.28	+0.5
5,198,619	-		PFLU_RS23135	0.29	-1.5
5,198,844	+				+1.0
5,198,844	+				+0.8
5,198,844	+				-0.5
5,198,844	+				-1.1
5,198,844	+				+1.9
5,198,845	-				+0.0
5,198,845	-				-0.2
5,198,845	-				-2.5
5,198,877	+				-2.2
5,198,877	+				-2.1
5,198,878	-				+0.9
5,198,878	-				+1.3
5,198,878	-				-0.9
5,198,878	-				-1.2
5,198,967	+				-1.3
5,198,968	-				+1.3
5,199,781	+				+0.0
5,199,781	+				+4.2
5,199,781	+				-0.9
5,199,782	-				-2.2
5,199,782	-				+2.9
5,199,782	-				-0.9
5,199,829	+				+2.9
5,199,829	+				-0.5
5,199,830	-				-0.4
5,199,830	-				+0.9
5,199,830	-				-0.3
5,199,830	-				-0.9
5,200,035	+		PFLU_RS23145	0.16	-1.7
5,200,036	-		PFLU_RS23145	0.16	+0.1
5,200,107	+		PFLU_RS23145	0.21	-0.5
5,200,107	+		PFLU_RS23145	0.21	+1.1
5,200,162	+		PFLU_RS23145	0.24	-1.5
5,200,163	-		PFLU_RS23145	0.24	-1.1
5,200,163	-		PFLU_RS23145	0.24	-1.3
5,200,284	+		PFLU_RS23145	0.32	-1.4
5,200,284	+		PFLU_RS23145	0.32	+1.3
5,200,284	+		PFLU_RS23145	0.32	+2.2
5,200,284	+		PFLU_RS23145	0.32	+3.1
5,200,284	+		PFLU_RS23145	0.32	+4.0
5,200,284	+		PFLU_RS23145	0.32	-0.5
5,200,284	+		PFLU_RS23145	0.32	+1.3
5,200,284	+		PFLU_RS23145	0.32	+2.2
5,200,284	+		PFLU_RS23145	0.32	-0.3
5,200,284	+		PFLU_RS23145	0.32	-1.3
5,200,284	+		PFLU_RS23145	0.32	-0.8
5,200,284	+		PFLU_RS23145	0.32	-0.2
5,200,284	+		PFLU_RS23145	0.32	+0.9
5,200,284	+		PFLU_RS23145	0.32	-2.1
5,200,284	+		PFLU_RS23145	0.32	+0.6
5,200,284	+		PFLU_RS23145	0.32	+1.8
5,200,284	+		PFLU_RS23145	0.32	+2.8
5,200,284	+		PFLU_RS23145	0.32	-0.3
5,200,284	+		PFLU_RS23145	0.32	+1.8
5,200,284	+		PFLU_RS23145	0.32	-1.3
5,200,284	+		PFLU_RS23145	0.32	-0.1
5,200,284	+		PFLU_RS23145	0.32	+2.4
5,200,284	+		PFLU_RS23145	0.32	-0.1
5,200,284	+		PFLU_RS23145	0.32	+2.4
5,200,284	+		PFLU_RS23145	0.32	+3.1
5,200,284	+		PFLU_RS23145	0.32	+2.1
5,200,284	+		PFLU_RS23145	0.32	-0.9
5,200,284	+		PFLU_RS23145	0.32	-0.4
5,200,284	+		PFLU_RS23145	0.32	+1.3
5,200,284	+		PFLU_RS23145	0.32	+1.5
5,200,284	+		PFLU_RS23145	0.32	-0.9
5,200,284	+		PFLU_RS23145	0.32	+3.1
5,200,284	+		PFLU_RS23145	0.32	+2.3
5,200,284	+		PFLU_RS23145	0.32	+2.4
5,200,284	+		PFLU_RS23145	0.32	-0.9
5,200,284	+		PFLU_RS23145	0.32	-0.3
5,200,284	+		PFLU_RS23145	0.32	+0.1
5,200,284	+		PFLU_RS23145	0.32	-1.8
5,200,284	+		PFLU_RS23145	0.32	-0.1
5,200,284	+		PFLU_RS23145	0.32	+1.8
5,200,284	+		PFLU_RS23145	0.32	+0.0
5,200,284	+		PFLU_RS23145	0.32	+0.6
5,200,284	+		PFLU_RS23145	0.32	-0.3
5,200,284	+		PFLU_RS23145	0.32	-0.3
5,200,284	+		PFLU_RS23145	0.32	-1.1
5,200,284	+		PFLU_RS23145	0.32	-0.7
5,200,284	+		PFLU_RS23145	0.32	-1.3
5,200,284	+		PFLU_RS23145	0.32	+2.3
5,200,284	+		PFLU_RS23145	0.32	+0.9
5,200,284	+		PFLU_RS23145	0.32	+0.8
5,200,284	+		PFLU_RS23145	0.32	-1.9
5,200,284	+		PFLU_RS23145	0.32	-0.5
5,200,284	+		PFLU_RS23145	0.32	+1.3
5,200,284	+		PFLU_RS23145	0.32	+1.6
5,200,284	+		PFLU_RS23145	0.32	+3.3
5,200,284	+		PFLU_RS23145	0.32	-0.4
5,200,284	+		PFLU_RS23145	0.32	-3.0
5,200,284	+		PFLU_RS23145	0.32	+0.4
5,200,284	+		PFLU_RS23145	0.32	-2.5
5,200,284	+		PFLU_RS23145	0.32	-1.2
5,200,284	+		PFLU_RS23145	0.32	-1.2
5,200,284	+		PFLU_RS23145	0.32	-1.7
5,200,284	+		PFLU_RS23145	0.32	-2.4
5,200,285	-		PFLU_RS23145	0.32	-1.5
5,200,285	-		PFLU_RS23145	0.32	-2.4
5,200,285	-		PFLU_RS23145	0.32	-1.5
5,200,285	-		PFLU_RS23145	0.32	-1.5
5,200,285	-		PFLU_RS23145	0.32	+1.5
5,200,285	-		PFLU_RS23145	0.32	+0.7
5,200,285	-		PFLU_RS23145	0.32	-0.3
5,200,285	-		PFLU_RS23145	0.32	+0.5
5,200,285	-		PFLU_RS23145	0.32	+0.7
5,200,285	-		PFLU_RS23145	0.32	-2.7
5,200,285	-		PFLU_RS23145	0.32	-1.9
5,200,285	-		PFLU_RS23145	0.32	-2.6
5,200,285	-		PFLU_RS23145	0.32	-0.5
5,200,285	-		PFLU_RS23145	0.32	+2.8
5,200,285	-		PFLU_RS23145	0.32	+2.0
5,200,285	-		PFLU_RS23145	0.32	+0.9
5,200,285	-		PFLU_RS23145	0.32	+1.7
5,200,285	-		PFLU_RS23145	0.32	-1.6
5,200,285	-		PFLU_RS23145	0.32	+1.7
5,200,285	-		PFLU_RS23145	0.32	-2.6
5,200,285	-		PFLU_RS23145	0.32	+0.6
5,200,285	-		PFLU_RS23145	0.32	-2.1
5,200,285	-		PFLU_RS23145	0.32	-2.3
5,200,285	-		PFLU_RS23145	0.32	+0.9
5,200,285	-		PFLU_RS23145	0.32	-0.7
5,200,285	-		PFLU_RS23145	0.32	-0.5
5,200,285	-		PFLU_RS23145	0.32	-0.9
5,200,285	-		PFLU_RS23145	0.32	-0.9
5,200,285	-		PFLU_RS23145	0.32	-1.5
5,200,285	-		PFLU_RS23145	0.32	+0.7
5,200,285	-		PFLU_RS23145	0.32	+1.1
5,200,285	-		PFLU_RS23145	0.32	-2.4
5,200,285	-		PFLU_RS23145	0.32	+0.1
5,200,285	-		PFLU_RS23145	0.32	+1.9
5,200,285	-		PFLU_RS23145	0.32	+1.7
5,200,285	-		PFLU_RS23145	0.32	-1.5
5,200,285	-		PFLU_RS23145	0.32	+2.6
5,200,285	-		PFLU_RS23145	0.32	-1.1
5,200,285	-		PFLU_RS23145	0.32	-0.2
5,200,285	-		PFLU_RS23145	0.32	+1.3
5,200,285	-		PFLU_RS23145	0.32	-2.8
5,200,285	-		PFLU_RS23145	0.32	+0.0
5,200,285	-		PFLU_RS23145	0.32	-0.9
5,200,285	-		PFLU_RS23145	0.32	-1.9
5,200,285	-		PFLU_RS23145	0.32	-0.4
5,200,285	-		PFLU_RS23145	0.32	+1.5
5,200,285	-		PFLU_RS23145	0.32	-0.3
5,200,285	-		PFLU_RS23145	0.32	+0.3
5,200,285	-		PFLU_RS23145	0.32	-2.1
5,200,285	-		PFLU_RS23145	0.32	+1.1
5,200,285	-		PFLU_RS23145	0.32	+1.6
5,200,285	-		PFLU_RS23145	0.32	-0.2
5,200,285	-		PFLU_RS23145	0.32	-1.4
5,200,347	+		PFLU_RS23145	0.36	-0.5
5,200,348	-		PFLU_RS23145	0.36	-1.2
5,200,348	-		PFLU_RS23145	0.36	-0.1
5,200,348	-		PFLU_RS23145	0.36	-0.9
5,200,625	+		PFLU_RS23145	0.53	-0.3
5,200,625	+		PFLU_RS23145	0.53	-1.1
5,200,625	+		PFLU_RS23145	0.53	-0.9
5,200,625	+		PFLU_RS23145	0.53	-2.7
5,200,626	-		PFLU_RS23145	0.53	-1.5
5,200,626	-		PFLU_RS23145	0.53	-0.4
5,200,626	-		PFLU_RS23145	0.53	+0.2
5,200,626	-		PFLU_RS23145	0.53	+3.7
5,200,628	+		PFLU_RS23145	0.53	-0.2
5,200,628	+		PFLU_RS23145	0.53	+1.8
5,200,628	+		PFLU_RS23145	0.53	-2.8
5,200,628	+		PFLU_RS23145	0.53	+0.5
5,200,628	+		PFLU_RS23145	0.53	-1.3
5,200,628	+		PFLU_RS23145	0.53	-0.2
5,200,628	+		PFLU_RS23145	0.53	-2.0
5,200,628	+		PFLU_RS23145	0.53	+1.5
5,200,628	+		PFLU_RS23145	0.53	-1.4
5,200,628	+		PFLU_RS23145	0.53	-1.7
5,200,628	+		PFLU_RS23145	0.53	+2.1
5,200,628	+		PFLU_RS23145	0.53	-1.7
5,200,628	+		PFLU_RS23145	0.53	-1.1
5,200,628	+		PFLU_RS23145	0.53	+3.0
5,200,628	+		PFLU_RS23145	0.53	-0.5
5,200,628	+		PFLU_RS23145	0.53	-0.1
5,200,628	+		PFLU_RS23145	0.53	+0.1
5,200,628	+		PFLU_RS23145	0.53	+4.1
5,200,628	+		PFLU_RS23145	0.53	+3.3
5,200,628	+		PFLU_RS23145	0.53	+0.3
5,200,628	+		PFLU_RS23145	0.53	+1.0
5,200,628	+		PFLU_RS23145	0.53	-0.9
5,200,628	+		PFLU_RS23145	0.53	-1.1
5,200,628	+		PFLU_RS23145	0.53	+3.9
5,200,628	+		PFLU_RS23145	0.53	+0.3
5,200,628	+		PFLU_RS23145	0.53	+0.3
5,200,629	-		PFLU_RS23145	0.53	-1.2
5,200,629	-		PFLU_RS23145	0.53	-1.2
5,200,629	-		PFLU_RS23145	0.53	+0.3
5,200,629	-		PFLU_RS23145	0.53	-2.3
5,200,629	-		PFLU_RS23145	0.53	+0.5
5,200,629	-		PFLU_RS23145	0.53	-1.2
5,200,629	-		PFLU_RS23145	0.53	-0.7
5,200,629	-		PFLU_RS23145	0.53	+0.7
5,200,629	-		PFLU_RS23145	0.53	-0.9
5,200,629	-		PFLU_RS23145	0.53	-0.9
5,200,629	-		PFLU_RS23145	0.53	-1.6
5,200,629	-		PFLU_RS23145	0.53	-1.7
5,200,629	-		PFLU_RS23145	0.53	-2.0
5,200,629	-		PFLU_RS23145	0.53	+0.1
5,200,629	-		PFLU_RS23145	0.53	-0.7
5,200,629	-		PFLU_RS23145	0.53	-0.3
5,200,629	-		PFLU_RS23145	0.53	-1.6
5,200,629	-		PFLU_RS23145	0.53	-0.1
5,200,629	-		PFLU_RS23145	0.53	+1.3
5,200,629	-		PFLU_RS23145	0.53	+2.2
5,200,629	-		PFLU_RS23145	0.53	-2.8
5,200,629	-		PFLU_RS23145	0.53	-3.2
5,200,629	-		PFLU_RS23145	0.53	-2.1
5,200,629	-		PFLU_RS23145	0.53	-0.7
5,200,629	-		PFLU_RS23145	0.53	-2.0
5,200,632	+		PFLU_RS23145	0.53	+0.5
5,200,632	+		PFLU_RS23145	0.53	+0.8
5,200,632	+		PFLU_RS23145	0.53	-1.9
5,200,632	+		PFLU_RS23145	0.53	+1.3
5,200,632	+		PFLU_RS23145	0.53	-0.9
5,200,632	+		PFLU_RS23145	0.53	+1.7
5,200,633	-		PFLU_RS23145	0.53	+1.3
5,200,633	-		PFLU_RS23145	0.53	-0.3
5,200,633	-		PFLU_RS23145	0.53	+0.1
5,200,633	-		PFLU_RS23145	0.53	+0.4
5,200,633	-		PFLU_RS23145	0.53	+0.7
5,200,633	-		PFLU_RS23145	0.53	+1.4
5,200,633	-		PFLU_RS23145	0.53	+1.1
5,200,633	-		PFLU_RS23145	0.53	-0.6
5,200,633	-		PFLU_RS23145	0.53	+1.3