Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17550

Experiment: Growth at pH9 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) Trisodium citrate
3,985,967	+		PFLU_RS17540	0.72	-2.2
3,985,968	-		PFLU_RS17540	0.72	+0.6
3,985,968	-		PFLU_RS17540	0.72	+2.7
3,986,043	-		PFLU_RS17540	0.77	+0.6
3,986,121	+		PFLU_RS17540	0.83	+0.6
3,986,142	+		PFLU_RS17540	0.84	-1.8
3,986,143	-		PFLU_RS17540	0.84	+0.2
3,986,156	+		PFLU_RS17540	0.85	-2.1
3,986,156	+		PFLU_RS17540	0.85	-1.5
3,986,157	-		PFLU_RS17540	0.85	-1.6
3,986,157	-		PFLU_RS17540	0.85	+1.1
3,986,157	-		PFLU_RS17540	0.85	+0.2
3,986,300	+				+2.2
3,986,301	-				+2.3
3,986,435	+				-1.7
3,986,435	+				-1.2
3,986,436	-				-0.8
3,986,436	-				+0.9
3,986,436	-				-2.7
3,986,507	+				-0.2
3,986,508	-				+0.6
3,986,508	-				-1.1
3,986,508	-				-0.2
3,986,508	-				-0.2
3,986,508	-				-1.7
3,986,634	+		PFLU_RS17545	0.54	-0.3
3,986,635	-		PFLU_RS17545	0.54	-0.5
3,986,715	+				-2.7
3,986,716	-				-2.5
3,986,716	-				+0.1
3,986,742	+				+3.5
3,986,742	+				-0.2
3,986,743	-				+1.0
3,986,767	+				-1.2
3,986,768	-				+2.0
3,986,775	-				+1.2
3,986,781	+				-1.5
3,986,782	-				-1.9
3,986,782	-				+0.3
3,986,782	-				+3.5
3,986,782	-				-0.5
3,986,819	+				-0.5
3,986,819	+				+2.1
3,986,819	+				+0.8
3,986,819	+				-1.0
3,986,819	+				-2.7
3,986,819	+				+0.5
3,986,819	+				-0.2
3,986,819	+				-1.7
3,986,819	+				+1.4
3,986,819	+				+1.8
3,986,820	-				+0.2
3,986,820	-				-0.7
3,986,820	-				+1.1
3,986,820	-				-0.9
3,986,820	-				+1.8
3,986,820	-				-1.3
3,986,820	-				-0.3
3,986,820	-				+0.8
3,986,820	-				-0.5
3,986,820	-				+1.8
3,986,820	-				-2.8
3,986,884	+				+0.2
3,986,884	+				+0.7
3,986,885	-				+0.8
3,986,885	-				+0.7
3,986,885	-				-2.2
3,986,983	-				+1.2
3,986,983	-				-1.4
3,987,039	-				-1.2
3,987,040	+				+2.4
3,987,040	+				-0.5
3,987,040	+				-0.8
3,987,041	-				+0.8
3,987,041	-				-1.2
3,987,108	+				-2.9
3,987,140	+		PFLU_RS17550	0.11	-0.2
3,987,140	+		PFLU_RS17550	0.11	+0.2
3,987,141	-		PFLU_RS17550	0.11	-1.0
3,987,223	+		PFLU_RS17550	0.15	+2.5
3,987,405	-		PFLU_RS17550	0.24	+0.2
3,987,405	-		PFLU_RS17550	0.24	-1.4
3,987,405	-		PFLU_RS17550	0.24	+1.5
3,987,413	+		PFLU_RS17550	0.24	-0.4
3,987,413	+		PFLU_RS17550	0.24	-0.7
3,987,414	-		PFLU_RS17550	0.24	-0.1
3,987,414	-		PFLU_RS17550	0.24	+2.8
3,987,509	+		PFLU_RS17550	0.29	+0.1
3,987,509	+		PFLU_RS17550	0.29	+2.5
3,987,509	+		PFLU_RS17550	0.29	-1.4
3,987,510	-		PFLU_RS17550	0.29	+2.3
3,987,510	-		PFLU_RS17550	0.29	-2.7
3,987,510	-		PFLU_RS17550	0.29	-1.0
3,987,588	-		PFLU_RS17550	0.33	-2.4
3,987,710	+		PFLU_RS17550	0.39	-1.9
3,987,884	+		PFLU_RS17550	0.47	+0.2
3,987,885	-		PFLU_RS17550	0.47	-0.5
3,987,885	-		PFLU_RS17550	0.47	-0.9
3,987,923	+		PFLU_RS17550	0.49	-0.9
3,987,923	+		PFLU_RS17550	0.49	-0.8
3,987,923	+		PFLU_RS17550	0.49	-0.8
3,987,924	-		PFLU_RS17550	0.49	+2.2
3,987,956	-		PFLU_RS17550	0.51	-1.4
3,988,127	-		PFLU_RS17550	0.59	-1.0
3,988,127	-		PFLU_RS17550	0.59	-0.2
3,988,244	+		PFLU_RS17550	0.65	+3.4
3,988,245	-		PFLU_RS17550	0.65	-1.7
3,988,245	-		PFLU_RS17550	0.65	-0.5
3,988,286	+		PFLU_RS17550	0.67	+0.4
3,988,286	+		PFLU_RS17550	0.67	-2.9
3,988,286	+		PFLU_RS17550	0.67	+0.2
3,988,286	+		PFLU_RS17550	0.67	-0.8
3,988,287	-		PFLU_RS17550	0.67	-1.7
3,988,287	-		PFLU_RS17550	0.67	+1.6
3,988,287	-		PFLU_RS17550	0.67	-2.2
3,988,287	-		PFLU_RS17550	0.67	+2.7
3,988,287	-		PFLU_RS17550	0.67	+0.2
3,988,287	-		PFLU_RS17550	0.67	-1.0
3,988,287	-		PFLU_RS17550	0.67	-1.7
3,988,393	+		PFLU_RS17550	0.72	+0.5
3,988,393	+		PFLU_RS17550	0.72	+0.6
3,988,482	+		PFLU_RS17550	0.76	-1.2
3,988,482	+		PFLU_RS17550	0.76	-2.2
3,988,482	+		PFLU_RS17550	0.76	-1.4
3,988,482	+		PFLU_RS17550	0.76	+1.5
3,988,482	+		PFLU_RS17550	0.76	-3.1
3,988,483	-		PFLU_RS17550	0.76	-2.3
3,988,483	-		PFLU_RS17550	0.76	+1.2
3,988,483	-		PFLU_RS17550	0.76	-1.2
3,988,536	+		PFLU_RS17550	0.79	+3.1
3,988,537	-		PFLU_RS17550	0.79	-0.5
3,988,537	-		PFLU_RS17550	0.79	+1.5
3,988,540	+		PFLU_RS17550	0.79	-0.2
3,988,540	+		PFLU_RS17550	0.79	+1.1
3,988,540	+		PFLU_RS17550	0.79	+1.2
3,988,540	+		PFLU_RS17550	0.79	+0.9
3,988,540	+		PFLU_RS17550	0.79	-1.7
3,988,541	-		PFLU_RS17550	0.79	-1.8
3,988,541	-		PFLU_RS17550	0.79	-0.0
3,988,541	-		PFLU_RS17550	0.79	+0.2
3,988,541	-		PFLU_RS17550	0.79	+1.0
3,988,541	-		PFLU_RS17550	0.79	+0.1
3,988,541	-		PFLU_RS17550	0.79	+1.8
3,988,541	-		PFLU_RS17550	0.79	-2.0
3,988,553	-		PFLU_RS17550	0.80	-0.7
3,988,555	+		PFLU_RS17550	0.80	+0.8
3,988,555	+		PFLU_RS17550	0.80	+2.0
3,988,555	+		PFLU_RS17550	0.80	-2.2
3,988,555	+		PFLU_RS17550	0.80	-1.1
3,988,555	+		PFLU_RS17550	0.80	-0.8
3,988,555	+		PFLU_RS17550	0.80	-1.8
3,988,555	+		PFLU_RS17550	0.80	-0.4
3,988,555	+		PFLU_RS17550	0.80	-0.2
3,988,556	-		PFLU_RS17550	0.80	+1.4
3,988,556	-		PFLU_RS17550	0.80	+2.6
3,988,556	-		PFLU_RS17550	0.80	+0.2
3,988,556	-		PFLU_RS17550	0.80	-0.0
3,988,556	-		PFLU_RS17550	0.80	-2.2
3,988,556	-		PFLU_RS17550	0.80	-0.5
3,988,556	-		PFLU_RS17550	0.80	-1.8
3,988,556	-		PFLU_RS17550	0.80	-0.5
3,988,556	-		PFLU_RS17550	0.80	-0.9
3,988,559	+		PFLU_RS17550	0.80	-1.0
3,988,559	+		PFLU_RS17550	0.80	-0.0
3,988,559	+		PFLU_RS17550	0.80	-2.3
3,988,559	+		PFLU_RS17550	0.80	-0.5
3,988,559	+		PFLU_RS17550	0.80	+1.6
3,988,559	+		PFLU_RS17550	0.80	+0.8
3,988,559	+		PFLU_RS17550	0.80	-0.3
3,988,559	+		PFLU_RS17550	0.80	+0.8
3,988,560	-		PFLU_RS17550	0.80	+0.8
3,988,560	-		PFLU_RS17550	0.80	-1.3
3,988,560	-		PFLU_RS17550	0.80	+0.6
3,988,560	-		PFLU_RS17550	0.80	-0.8
3,988,560	-		PFLU_RS17550	0.80	-0.4
3,988,560	-		PFLU_RS17550	0.80	+1.2
3,988,560	-		PFLU_RS17550	0.80	-2.1
3,988,592	+		PFLU_RS17550	0.81	-0.9
3,988,592	+		PFLU_RS17550	0.81	-0.5
3,988,592	+		PFLU_RS17550	0.81	+0.7
3,988,592	+		PFLU_RS17550	0.81	+3.2
3,988,592	+		PFLU_RS17550	0.81	-1.2
3,988,592	+		PFLU_RS17550	0.81	-1.4
3,988,592	+		PFLU_RS17550	0.81	+0.1
3,988,592	+		PFLU_RS17550	0.81	+0.2
3,988,592	+		PFLU_RS17550	0.81	+1.4
3,988,592	+		PFLU_RS17550	0.81	+1.6
3,988,592	+		PFLU_RS17550	0.81	-0.2
3,988,592	+		PFLU_RS17550	0.81	-1.1
3,988,592	+		PFLU_RS17550	0.81	-1.0
3,988,592	+		PFLU_RS17550	0.81	-0.4
3,988,592	+		PFLU_RS17550	0.81	+0.8
3,988,593	-		PFLU_RS17550	0.81	-0.6
3,988,593	-		PFLU_RS17550	0.81	-0.7
3,988,593	-		PFLU_RS17550	0.81	+0.8
3,988,593	-		PFLU_RS17550	0.81	+0.2
3,988,593	-		PFLU_RS17550	0.81	+0.1
3,988,593	-		PFLU_RS17550	0.81	+0.8
3,988,593	-		PFLU_RS17550	0.81	-0.4
3,988,593	-		PFLU_RS17550	0.81	-2.4
3,988,593	-		PFLU_RS17550	0.81	+3.2
3,988,593	-		PFLU_RS17550	0.81	+3.6
3,988,593	-		PFLU_RS17550	0.81	+1.9
3,988,593	-		PFLU_RS17550	0.81	+0.5
3,988,593	-		PFLU_RS17550	0.81	-1.6
3,988,670	+		PFLU_RS17550	0.85	+3.3
3,988,671	-		PFLU_RS17550	0.85	+1.2
3,988,671	-		PFLU_RS17550	0.85	-0.3
3,988,671	-		PFLU_RS17550	0.85	-1.5
3,988,833	-				-0.0
3,988,857	+				-1.7
3,988,857	+				-0.4
3,988,857	+				+0.4
3,988,857	+				+0.2
3,988,858	-				+0.8
3,989,039	+				+0.1
3,989,039	+				-1.5
3,989,039	+				-1.8
3,989,039	+				-0.8
3,989,039	+				-0.9
3,989,040	-				+0.1
3,989,040	-				+1.0
3,989,040	-				-2.1
3,989,040	-				+1.0
3,989,043	+				-1.5
3,989,043	+				+0.2
3,989,043	+				-1.7
3,989,044	-				+1.5
3,989,044	-				+2.2
3,989,121	+				+2.5
3,989,121	+				-1.2
3,989,121	+				+1.7
3,989,121	+				-1.8
3,989,121	+				+1.7
3,989,121	+				-1.1
3,989,122	-				-2.1
3,989,122	-				+1.8
3,989,122	-				-1.8
3,989,170	+				-2.4
3,989,170	+				+1.2
3,989,171	-				+0.6
3,989,297	-				+1.8
3,989,385	+		PFLU_RS17555	0.11	-1.5
3,989,385	+		PFLU_RS17555	0.11	-0.4
3,989,385	+		PFLU_RS17555	0.11	+3.6
3,989,385	+		PFLU_RS17555	0.11	-2.4
3,989,385	+		PFLU_RS17555	0.11	+1.8
3,989,385	+		PFLU_RS17555	0.11	-0.9
3,989,386	-		PFLU_RS17555	0.11	-2.0
3,989,386	-		PFLU_RS17555	0.11	+0.8
3,989,386	-		PFLU_RS17555	0.11	-2.3
3,989,386	-		PFLU_RS17555	0.11	+0.1
3,989,386	-		PFLU_RS17555	0.11	-0.8
3,989,386	-		PFLU_RS17555	0.11	-0.5
3,989,386	-		PFLU_RS17555	0.11	-2.6
3,989,386	-		PFLU_RS17555	0.11	+0.7
3,989,386	-		PFLU_RS17555	0.11	-2.1
3,989,529	-		PFLU_RS17555	0.16	-0.5
3,989,612	-		PFLU_RS17555	0.20	+1.1
3,989,612	-		PFLU_RS17555	0.20	+2.3
3,989,634	+		PFLU_RS17555	0.20	+4.1
3,989,668	-		PFLU_RS17555	0.22	+0.5
3,989,769	+		PFLU_RS17555	0.26	-1.7
3,989,769	+		PFLU_RS17555	0.26	-1.4
3,989,770	-		PFLU_RS17555	0.26	-2.0
3,989,835	+		PFLU_RS17555	0.28	-1.0
3,989,835	+		PFLU_RS17555	0.28	+1.2
3,989,835	+		PFLU_RS17555	0.28	-2.1
3,989,835	+		PFLU_RS17555	0.28	+1.2
3,989,836	-		PFLU_RS17555	0.28	-1.2