Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16990

Experiment: Growth at pH9 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) Trisodium citrate
3,851,513	+		PFLU_RS16980	0.81	+2.8
3,851,514	-		PFLU_RS16980	0.81	+1.5
3,851,522	+		PFLU_RS16980	0.82	-1.5
3,851,522	+		PFLU_RS16980	0.82	+2.3
3,851,522	+		PFLU_RS16980	0.82	-0.8
3,851,522	+		PFLU_RS16980	0.82	-0.5
3,851,522	+		PFLU_RS16980	0.82	+3.5
3,851,522	+		PFLU_RS16980	0.82	+0.4
3,851,522	+		PFLU_RS16980	0.82	+1.9
3,851,523	-		PFLU_RS16980	0.82	+3.3
3,851,769	-				+0.2
3,851,773	+				+1.9
3,851,773	+				+0.1
3,851,774	-				-1.0
3,851,774	-				-0.3
3,851,776	+				-2.5
3,851,777	-				-2.1
3,851,790	+				-0.8
3,851,790	+				-2.0
3,851,790	+				-0.2
3,851,790	+				-0.6
3,851,790	+				-2.4
3,851,790	+				-0.7
3,851,790	+				+0.5
3,851,790	+				-1.4
3,851,790	+				-0.2
3,851,791	-				-1.8
3,851,791	-				+2.5
3,851,791	-				-1.8
3,851,791	-				-1.5
3,851,794	+				-1.4
3,851,794	+				-0.5
3,851,794	+				+4.2
3,851,794	+				-1.9
3,851,794	+				-1.0
3,851,794	+				-0.1
3,851,794	+				+1.6
3,851,794	+				-0.2
3,851,794	+				+1.0
3,851,794	+				+2.2
3,851,794	+				+0.2
3,851,794	+				+1.0
3,851,794	+				-1.8
3,851,794	+				-1.0
3,851,794	+				-1.8
3,851,794	+				+0.5
3,851,795	-				+0.6
3,851,795	-				-1.0
3,851,795	-				-2.0
3,851,795	-				+2.2
3,851,795	-				-2.6
3,851,795	-				+0.7
3,851,795	-				+2.7
3,851,800	+				+1.6
3,851,800	+				+1.4
3,851,801	-				+0.5
3,851,801	-				+1.6
3,851,801	-				-2.4
3,851,886	-		PFLU_RS16985	0.13	+0.2
3,851,897	+		PFLU_RS16985	0.15	+1.4
3,851,898	-		PFLU_RS16985	0.16	+3.1
3,852,002	+		PFLU_RS16985	0.35	-0.5
3,852,002	+		PFLU_RS16985	0.35	-1.1
3,852,002	+		PFLU_RS16985	0.35	+0.5
3,852,002	+		PFLU_RS16985	0.35	+2.5
3,852,175	+		PFLU_RS16985	0.68	+0.2
3,852,175	+		PFLU_RS16985	0.68	-1.5
3,852,175	+		PFLU_RS16985	0.68	-1.2
3,852,175	+		PFLU_RS16985	0.68	+0.9
3,852,175	+		PFLU_RS16985	0.68	-1.7
3,852,175	+		PFLU_RS16985	0.68	-0.5
3,852,175	+		PFLU_RS16985	0.68	-0.5
3,852,175	+		PFLU_RS16985	0.68	+0.2
3,852,175	+		PFLU_RS16985	0.68	-1.2
3,852,175	+		PFLU_RS16985	0.68	+1.8
3,852,175	+		PFLU_RS16985	0.68	+0.2
3,852,175	+		PFLU_RS16985	0.68	-0.5
3,852,175	+		PFLU_RS16985	0.68	-0.4
3,852,175	+		PFLU_RS16985	0.68	-0.5
3,852,175	+		PFLU_RS16985	0.68	+1.0
3,852,175	+		PFLU_RS16985	0.68	-1.9
3,852,176	-		PFLU_RS16985	0.69	+2.7
3,852,176	-		PFLU_RS16985	0.69	+1.3
3,852,176	-		PFLU_RS16985	0.69	-2.5
3,852,176	-		PFLU_RS16985	0.69	-1.8
3,852,176	-		PFLU_RS16985	0.69	+0.8
3,852,176	-		PFLU_RS16985	0.69	-0.4
3,852,176	-		PFLU_RS16985	0.69	-0.8
3,852,176	-		PFLU_RS16985	0.69	+1.2
3,852,308	+				+0.1
3,852,308	+				-1.7
3,852,309	-				+2.2
3,852,309	-				-0.4
3,852,309	-				+0.0
3,852,379	-				+0.3
3,852,427	-				-1.7
3,852,497	-				+2.4
3,852,497	-				+0.6
3,852,497	-				-1.8
3,852,715	+		PFLU_RS16990	0.18	-1.5
3,852,764	-		PFLU_RS16990	0.22	-1.4
3,852,806	+		PFLU_RS16990	0.25	-1.0
3,852,806	+		PFLU_RS16990	0.25	-3.2
3,852,806	+		PFLU_RS16990	0.25	-0.2
3,852,807	-		PFLU_RS16990	0.25	-2.2
3,852,973	+		PFLU_RS16990	0.38	-0.0
3,852,973	+		PFLU_RS16990	0.38	-1.4
3,852,973	+		PFLU_RS16990	0.38	-2.2
3,852,973	+		PFLU_RS16990	0.38	-1.5
3,852,973	+		PFLU_RS16990	0.38	+0.3
3,852,973	+		PFLU_RS16990	0.38	+4.1
3,852,973	+		PFLU_RS16990	0.38	+2.6
3,852,973	+		PFLU_RS16990	0.38	-0.3
3,852,974	-		PFLU_RS16990	0.38	+2.8
3,852,974	-		PFLU_RS16990	0.38	+2.3
3,853,021	+		PFLU_RS16990	0.42	-0.2
3,853,021	+		PFLU_RS16990	0.42	-1.6
3,853,021	+		PFLU_RS16990	0.42	+0.7
3,853,021	+		PFLU_RS16990	0.42	+0.1
3,853,021	+		PFLU_RS16990	0.42	-1.0
3,853,021	+		PFLU_RS16990	0.42	-1.7
3,853,021	+		PFLU_RS16990	0.42	+3.0
3,853,021	+		PFLU_RS16990	0.42	+3.1
3,853,021	+		PFLU_RS16990	0.42	+3.3
3,853,021	+		PFLU_RS16990	0.42	+5.1
3,853,021	+		PFLU_RS16990	0.42	-1.8
3,853,021	+		PFLU_RS16990	0.42	+0.8
3,853,021	+		PFLU_RS16990	0.42	+2.4
3,853,021	+		PFLU_RS16990	0.42	+1.7
3,853,021	+		PFLU_RS16990	0.42	-1.7
3,853,021	+		PFLU_RS16990	0.42	-1.0
3,853,021	+		PFLU_RS16990	0.42	-3.0
3,853,021	+		PFLU_RS16990	0.42	-0.3
3,853,021	+		PFLU_RS16990	0.42	-1.2
3,853,021	+		PFLU_RS16990	0.42	+1.5
3,853,021	+		PFLU_RS16990	0.42	+1.6
3,853,021	+		PFLU_RS16990	0.42	+1.4
3,853,021	+		PFLU_RS16990	0.42	-0.5
3,853,021	+		PFLU_RS16990	0.42	-2.0
3,853,021	+		PFLU_RS16990	0.42	-1.8
3,853,021	+		PFLU_RS16990	0.42	+2.7
3,853,021	+		PFLU_RS16990	0.42	-1.2
3,853,021	+		PFLU_RS16990	0.42	+1.6
3,853,021	+		PFLU_RS16990	0.42	+1.2
3,853,022	-		PFLU_RS16990	0.42	-1.7
3,853,022	-		PFLU_RS16990	0.42	-1.5
3,853,022	-		PFLU_RS16990	0.42	+4.2
3,853,022	-		PFLU_RS16990	0.42	+1.5
3,853,022	-		PFLU_RS16990	0.42	-0.5
3,853,022	-		PFLU_RS16990	0.42	+1.2
3,853,022	-		PFLU_RS16990	0.42	+1.8
3,853,022	-		PFLU_RS16990	0.42	-0.5
3,853,022	-		PFLU_RS16990	0.42	-2.3
3,853,022	-		PFLU_RS16990	0.42	-0.8
3,853,022	-		PFLU_RS16990	0.42	+0.9
3,853,022	-		PFLU_RS16990	0.42	+0.2
3,853,022	-		PFLU_RS16990	0.42	-1.2
3,853,022	-		PFLU_RS16990	0.42	+0.8
3,853,022	-		PFLU_RS16990	0.42	-0.5
3,853,022	-		PFLU_RS16990	0.42	+5.4
3,853,022	-		PFLU_RS16990	0.42	-1.2
3,853,022	-		PFLU_RS16990	0.42	+2.8
3,853,022	-		PFLU_RS16990	0.42	-1.8
3,853,022	-		PFLU_RS16990	0.42	-1.0
3,853,022	-		PFLU_RS16990	0.42	+2.9
3,853,022	-		PFLU_RS16990	0.42	-1.9
3,853,022	-		PFLU_RS16990	0.42	+4.1
3,853,022	-		PFLU_RS16990	0.42	+0.5
3,853,022	-		PFLU_RS16990	0.42	-1.2
3,853,283	+		PFLU_RS16990	0.62	-0.5
3,853,283	+		PFLU_RS16990	0.62	+3.1
3,853,283	+		PFLU_RS16990	0.62	-2.0
3,853,283	+		PFLU_RS16990	0.62	-1.0
3,853,283	+		PFLU_RS16990	0.62	+0.5
3,853,283	+		PFLU_RS16990	0.62	+0.5
3,853,284	-		PFLU_RS16990	0.62	-0.2
3,853,284	-		PFLU_RS16990	0.62	+1.9
3,853,284	-		PFLU_RS16990	0.62	+0.2
3,853,284	-		PFLU_RS16990	0.62	-1.8
3,853,284	-		PFLU_RS16990	0.62	+2.1
3,853,321	+		PFLU_RS16990	0.65	+2.3
3,853,321	+		PFLU_RS16990	0.65	-0.4
3,853,321	+		PFLU_RS16990	0.65	-0.9
3,853,322	-		PFLU_RS16990	0.65	-0.5
3,853,322	-		PFLU_RS16990	0.65	+0.9
3,853,322	-		PFLU_RS16990	0.65	-1.0
3,853,322	-		PFLU_RS16990	0.65	+0.2
3,853,322	-		PFLU_RS16990	0.65	-1.4
3,853,322	-		PFLU_RS16990	0.65	-3.1
3,853,322	-		PFLU_RS16990	0.65	+2.4
3,853,357	+		PFLU_RS16990	0.68	-1.0
3,853,357	+		PFLU_RS16990	0.68	-1.8
3,853,357	+		PFLU_RS16990	0.68	-0.8
3,853,358	-		PFLU_RS16990	0.68	-1.4
3,853,369	+		PFLU_RS16990	0.69	-0.0
3,853,400	+		PFLU_RS16990	0.72	-1.2
3,853,401	-		PFLU_RS16990	0.72	+5.6
3,853,403	+		PFLU_RS16990	0.72	+0.5
3,853,403	+		PFLU_RS16990	0.72	+2.8
3,853,403	+		PFLU_RS16990	0.72	+3.4
3,853,404	-		PFLU_RS16990	0.72	+2.6
3,853,404	-		PFLU_RS16990	0.72	-1.2
3,853,404	-		PFLU_RS16990	0.72	-0.4
3,853,458	+		PFLU_RS16990	0.76	-1.6
3,853,546	+		PFLU_RS16990	0.83	-0.2
3,853,621	+		PFLU_RS16990	0.89	-0.4
3,853,622	-		PFLU_RS16990	0.89	+2.3
3,853,651	+				+3.4
3,853,651	+				-1.9
3,853,652	-				-1.4
3,853,652	-				-2.3
3,853,652	-				-0.5
3,853,690	+				+1.0
3,853,690	+				-1.6
3,853,690	+				-2.3
3,853,690	+				+0.0
3,853,690	+				+1.9
3,853,690	+				-0.3
3,853,691	-				+1.4
3,853,691	-				-0.2
3,853,691	-				-0.0
3,853,691	-				-1.2
3,853,691	-				+1.2
3,853,691	-				-1.2
3,853,691	-				-0.2
3,853,691	-				+1.8
3,853,738	+				-0.8
3,853,738	+				-0.2
3,853,738	+				+3.7
3,853,738	+				+1.6
3,853,738	+				+2.5
3,853,738	+				+2.8
3,853,739	-				-0.8
3,853,739	-				-2.0
3,853,739	-				-2.3
3,853,739	-				-0.3
3,853,739	-				-1.3
3,853,739	-				+0.8
3,853,739	-				-1.0
3,853,739	-				-0.2
3,853,739	-				-0.0
3,853,750	+				+0.2
3,853,750	+				+0.8
3,853,751	-				-0.5
3,853,751	-				+0.7
3,853,751	-				-1.2
3,853,765	+				-1.9
3,853,765	+				-2.5
3,853,765	+				+2.5
3,853,765	+				+1.1
3,853,765	+				-0.1
3,853,765	+				+1.6
3,853,766	-				+0.4
3,853,766	-				+2.1
3,853,795	+				+2.5
3,853,796	-				+1.9
3,853,842	-		PFLU_RS16995	0.11	-0.2
3,853,873	+		PFLU_RS16995	0.15	+1.8
3,853,873	+		PFLU_RS16995	0.15	-0.2
3,853,873	+		PFLU_RS16995	0.15	-1.7
3,853,873	+		PFLU_RS16995	0.15	-1.0
3,853,873	+		PFLU_RS16995	0.15	-0.5
3,853,873	+		PFLU_RS16995	0.15	+3.3
3,853,873	+		PFLU_RS16995	0.15	-1.0
3,853,873	+		PFLU_RS16995	0.15	+1.0
3,853,873	+		PFLU_RS16995	0.15	-2.6
3,853,873	+		PFLU_RS16995	0.15	-0.5
3,853,873	+		PFLU_RS16995	0.15	-1.0
3,853,873	+		PFLU_RS16995	0.15	+1.8
3,853,874	-		PFLU_RS16995	0.16	+3.8
3,853,874	-		PFLU_RS16995	0.16	-1.5
3,853,874	-		PFLU_RS16995	0.16	-0.8
3,853,874	-		PFLU_RS16995	0.16	-1.0
3,853,874	-		PFLU_RS16995	0.16	-1.5
3,853,874	-		PFLU_RS16995	0.16	+1.0
3,853,874	-		PFLU_RS16995	0.16	-1.5
3,853,874	-		PFLU_RS16995	0.16	-0.2
3,853,874	-		PFLU_RS16995	0.16	-1.4
3,853,874	-		PFLU_RS16995	0.16	+0.2
3,854,164	+		PFLU_RS16995	0.56	+0.8
3,854,164	+		PFLU_RS16995	0.56	-1.8
3,854,164	+		PFLU_RS16995	0.56	-1.2
3,854,164	+		PFLU_RS16995	0.56	-1.2
3,854,165	-		PFLU_RS16995	0.57	+0.2
3,854,165	-		PFLU_RS16995	0.57	+0.7
3,854,165	-		PFLU_RS16995	0.57	-0.4
3,854,165	-		PFLU_RS16995	0.57	-0.8
3,854,165	-		PFLU_RS16995	0.57	-2.1
3,854,165	-		PFLU_RS16995	0.57	-1.5
3,854,196	-		PFLU_RS16995	0.61	+0.8
3,854,196	-		PFLU_RS16995	0.61	-1.0
3,854,196	-		PFLU_RS16995	0.61	-0.8
3,854,471	+				-3.2
3,854,471	+				-1.5
3,854,472	-				+3.3
3,854,511	+				-1.0
3,854,511	+				+0.8
3,854,512	-				-0.1
3,854,512	-				+1.8
3,854,512	-				-1.7
3,854,512	-				+1.7
3,854,513	+				+1.2
3,854,513	+				-1.3
3,854,513	+				-1.3
3,854,513	+				+2.2
3,854,513	+				+0.5
3,854,513	+				-0.6
3,854,513	+				-0.8
3,854,513	+				-1.0
3,854,513	+				-0.7
3,854,513	+				+2.2
3,854,513	+				-1.0
3,854,513	+				+0.4
3,854,513	+				+1.7
3,854,513	+				-1.0
3,854,513	+				-1.0
3,854,513	+				+2.6
3,854,513	+				+0.8
3,854,513	+				-0.2
3,854,513	+				-0.6
3,854,513	+				-0.5
3,854,513	+				-2.7
3,854,513	+				-1.5
3,854,513	+				-1.0
3,854,513	+				+4.1
3,854,514	-				-1.0
3,854,514	-				-1.1
3,854,514	-				+1.6
3,854,514	-				+1.3
3,854,514	-				+2.3
3,854,514	-				-1.4
3,854,514	-				+1.4
3,854,514	-				+2.0
3,854,514	-				-1.8
3,854,514	-				+3.2
3,854,514	-				+2.8
3,854,514	-				-0.5
3,854,514	-				-0.5
3,854,514	-				-0.5
3,854,514	-				+2.3
3,854,514	-				+1.1
3,854,514	-				+0.5
3,854,514	-				+0.0
3,854,514	-				+0.0
3,854,514	-				-0.8
3,854,514	-				+0.4
3,854,514	-				+1.6
3,854,514	-				-0.2
3,854,514	-				+3.1
3,854,514	-				+2.1
3,854,514	-				+0.8
3,854,514	-				-0.8
3,854,514	-				-1.5
3,854,514	-				-0.6
3,854,514	-				-1.9
3,854,533	+				+0.2
3,854,533	+				-0.5
3,854,533	+				+2.2
3,854,533	+				+2.0
3,854,533	+				+1.0
3,854,533	+				+5.0
3,854,534	-				-1.7
3,854,534	-				-0.1
3,854,534	-				+3.6
3,854,576	-				+1.0
3,854,585	+				+0.8
3,854,586	-				+0.8
3,854,586	-				+1.8
3,854,592	+				+0.5
3,854,592	+				+0.2
3,854,592	+				-1.4
3,854,593	-				+1.8
3,854,593	-				+1.2
3,854,593	-				+0.8
3,854,593	-				-0.2
3,854,593	-				+0.8
3,854,593	-				+2.3
3,854,593	-				+1.7
3,854,616	+				-1.7
3,854,616	+				-1.4
3,854,616	+				+2.6
3,854,616	+				-0.2
3,854,616	+				+1.0
3,854,616	+				-0.7
3,854,617	-				+0.4
3,854,617	-				+0.8
3,854,617	-				-0.3
3,854,617	-				-2.0
3,854,617	-				+0.3
3,854,617	-				+0.2
3,854,628	+				+4.3
3,854,628	+				+1.0
3,854,628	+				+3.8
3,854,629	-				+0.8
3,854,629	-				+4.5
3,854,629	-				+0.2
3,854,629	-				+1.9
3,854,629	-				+3.0
3,854,629	-				-0.2
3,854,641	+				-2.9
3,854,642	-				-1.0
3,854,642	-				-2.5
3,854,701	-				+4.0
3,854,701	-				-2.2