Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16560

Experiment: Growth at pH9 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) Trisodium citrate
3,754,561	-				-1.1
3,754,577	+				-1.6
3,754,577	+				-1.1
3,754,577	+				-1.1
3,754,577	+				-1.5
3,754,577	+				+2.2
3,754,577	+				-2.0
3,754,577	+				-0.6
3,754,578	-				+0.7
3,754,578	-				-0.6
3,754,578	-				+0.7
3,754,578	-				+1.3
3,754,578	-				-3.0
3,754,579	+				-2.4
3,754,579	+				+0.4
3,754,579	+				+0.7
3,754,579	+				-0.6
3,754,579	+				-1.0
3,754,579	+				-2.1
3,754,579	+				-0.9
3,754,579	+				+1.1
3,754,579	+				-1.8
3,754,579	+				-0.9
3,754,579	+				-0.1
3,754,579	+				+0.2
3,754,579	+				+0.6
3,754,579	+				+0.7
3,754,579	+				+3.7
3,754,580	-				+1.0
3,754,580	-				+3.3
3,754,580	-				-1.2
3,754,580	-				+0.9
3,754,580	-				-2.4
3,754,580	-				-0.6
3,754,580	-				-1.1
3,754,580	-				-2.0
3,754,580	-				-1.7
3,754,580	-				-0.7
3,754,580	-				-2.4
3,754,580	-				+1.2
3,754,580	-				-1.3
3,754,580	-				+4.0
3,754,580	-				-1.1
3,754,580	-				-0.6
3,754,580	-				-0.6
3,754,597	+				-2.3
3,754,628	-		PFLU_RS16555	0.13	+1.4
3,754,697	-		PFLU_RS16555	0.19	-2.2
3,754,929	-		PFLU_RS16555	0.41	+0.5
3,754,970	+		PFLU_RS16555	0.45	+0.4
3,754,970	+		PFLU_RS16555	0.45	-1.1
3,754,971	-		PFLU_RS16555	0.45	+1.0
3,754,971	-		PFLU_RS16555	0.45	+0.8
3,754,971	-		PFLU_RS16555	0.45	-2.1
3,754,971	-		PFLU_RS16555	0.45	-0.1
3,755,024	+		PFLU_RS16555	0.50	-0.3
3,755,024	+		PFLU_RS16555	0.50	+0.0
3,755,024	+		PFLU_RS16555	0.50	+2.1
3,755,024	+		PFLU_RS16555	0.50	-1.5
3,755,027	+		PFLU_RS16555	0.50	-0.3
3,755,027	+		PFLU_RS16555	0.50	-2.0
3,755,027	+		PFLU_RS16555	0.50	+0.7
3,755,028	-		PFLU_RS16555	0.50	+1.4
3,755,130	+		PFLU_RS16555	0.60	+2.3
3,755,130	+		PFLU_RS16555	0.60	+0.4
3,755,130	+		PFLU_RS16555	0.60	+1.3
3,755,130	+		PFLU_RS16555	0.60	+0.2
3,755,130	+		PFLU_RS16555	0.60	+0.7
3,755,130	+		PFLU_RS16555	0.60	-0.0
3,755,130	+		PFLU_RS16555	0.60	-2.0
3,755,130	+		PFLU_RS16555	0.60	-2.7
3,755,130	+		PFLU_RS16555	0.60	-2.6
3,755,130	+		PFLU_RS16555	0.60	+3.0
3,755,130	+		PFLU_RS16555	0.60	+1.8
3,755,130	+		PFLU_RS16555	0.60	-0.8
3,755,130	+		PFLU_RS16555	0.60	+1.4
3,755,130	+		PFLU_RS16555	0.60	-1.9
3,755,130	+		PFLU_RS16555	0.60	+0.8
3,755,130	+		PFLU_RS16555	0.60	+1.7
3,755,130	+		PFLU_RS16555	0.60	+3.7
3,755,130	+		PFLU_RS16555	0.60	-0.9
3,755,130	+		PFLU_RS16555	0.60	-2.0
3,755,130	+		PFLU_RS16555	0.60	-2.1
3,755,130	+		PFLU_RS16555	0.60	-0.4
3,755,130	+		PFLU_RS16555	0.60	-0.9
3,755,130	+		PFLU_RS16555	0.60	+2.0
3,755,130	+		PFLU_RS16555	0.60	-0.1
3,755,130	+		PFLU_RS16555	0.60	-0.0
3,755,130	+		PFLU_RS16555	0.60	+3.4
3,755,130	+		PFLU_RS16555	0.60	-0.6
3,755,130	+		PFLU_RS16555	0.60	+1.7
3,755,130	+		PFLU_RS16555	0.60	+1.7
3,755,130	+		PFLU_RS16555	0.60	+0.1
3,755,130	+		PFLU_RS16555	0.60	-2.1
3,755,130	+		PFLU_RS16555	0.60	-0.3
3,755,130	+		PFLU_RS16555	0.60	+1.1
3,755,130	+		PFLU_RS16555	0.60	-1.8
3,755,131	-		PFLU_RS16555	0.60	-0.1
3,755,131	-		PFLU_RS16555	0.60	-1.6
3,755,131	-		PFLU_RS16555	0.60	-1.5
3,755,131	-		PFLU_RS16555	0.60	+2.0
3,755,131	-		PFLU_RS16555	0.60	-2.2
3,755,131	-		PFLU_RS16555	0.60	-2.0
3,755,131	-		PFLU_RS16555	0.60	+0.0
3,755,131	-		PFLU_RS16555	0.60	-1.1
3,755,131	-		PFLU_RS16555	0.60	+1.3
3,755,131	-		PFLU_RS16555	0.60	+0.3
3,755,131	-		PFLU_RS16555	0.60	-0.6
3,755,131	-		PFLU_RS16555	0.60	+2.0
3,755,131	-		PFLU_RS16555	0.60	-2.6
3,755,131	-		PFLU_RS16555	0.60	+3.3
3,755,131	-		PFLU_RS16555	0.60	+3.7
3,755,131	-		PFLU_RS16555	0.60	-1.6
3,755,131	-		PFLU_RS16555	0.60	+2.9
3,755,131	-		PFLU_RS16555	0.60	+3.9
3,755,131	-		PFLU_RS16555	0.60	-1.9
3,755,131	-		PFLU_RS16555	0.60	-0.1
3,755,131	-		PFLU_RS16555	0.60	+0.7
3,755,131	-		PFLU_RS16555	0.60	-3.1
3,755,131	-		PFLU_RS16555	0.60	+1.7
3,755,131	-		PFLU_RS16555	0.60	-2.9
3,755,131	-		PFLU_RS16555	0.60	-0.6
3,755,131	-		PFLU_RS16555	0.60	-0.3
3,755,131	-		PFLU_RS16555	0.60	-0.5
3,755,131	-		PFLU_RS16555	0.60	+2.9
3,755,131	-		PFLU_RS16555	0.60	-2.0
3,755,131	-		PFLU_RS16555	0.60	-1.6
3,755,131	-		PFLU_RS16555	0.60	+1.5
3,755,131	-		PFLU_RS16555	0.60	-0.9
3,755,131	-		PFLU_RS16555	0.60	-0.9
3,755,131	-		PFLU_RS16555	0.60	-0.0
3,755,131	-		PFLU_RS16555	0.60	-1.1
3,755,131	-		PFLU_RS16555	0.60	+0.1
3,755,131	-		PFLU_RS16555	0.60	+1.2
3,755,131	-		PFLU_RS16555	0.60	-0.1
3,755,131	-		PFLU_RS16555	0.60	-1.6
3,755,131	-		PFLU_RS16555	0.60	+1.8
3,755,131	-		PFLU_RS16555	0.60	-0.3
3,755,131	-		PFLU_RS16555	0.60	-0.2
3,755,132	+		PFLU_RS16555	0.60	+2.1
3,755,132	+		PFLU_RS16555	0.60	-1.3
3,755,132	+		PFLU_RS16555	0.60	-1.1
3,755,133	-		PFLU_RS16555	0.60	-1.1
3,755,133	-		PFLU_RS16555	0.60	-2.1
3,755,133	-		PFLU_RS16555	0.60	+0.1
3,755,133	-		PFLU_RS16555	0.60	-2.5
3,755,133	-		PFLU_RS16555	0.60	-1.3
3,755,133	-		PFLU_RS16555	0.60	-1.6
3,755,150	+		PFLU_RS16555	0.62	+1.0
3,755,150	+		PFLU_RS16555	0.62	+2.3
3,755,150	+		PFLU_RS16555	0.62	+4.2
3,755,151	-		PFLU_RS16555	0.62	+2.8
3,755,151	-		PFLU_RS16555	0.62	+0.4
3,755,151	-		PFLU_RS16555	0.62	-0.2
3,755,216	+		PFLU_RS16555	0.68	-1.1
3,755,273	+		PFLU_RS16555	0.73	+0.2
3,755,273	+		PFLU_RS16555	0.73	+0.1
3,755,274	-		PFLU_RS16555	0.73	-1.2
3,755,318	+		PFLU_RS16555	0.77	-1.3
3,755,318	+		PFLU_RS16555	0.77	+0.7
3,755,319	-		PFLU_RS16555	0.78	+0.1
3,755,347	+		PFLU_RS16555	0.80	-0.9
3,755,347	+		PFLU_RS16555	0.80	+1.7
3,755,347	+		PFLU_RS16555	0.80	+0.4
3,755,347	+		PFLU_RS16555	0.80	-2.5
3,755,348	-		PFLU_RS16555	0.80	+0.6
3,755,348	-		PFLU_RS16555	0.80	-2.0
3,755,348	-		PFLU_RS16555	0.80	-0.7
3,755,348	-		PFLU_RS16555	0.80	-2.0
3,755,348	-		PFLU_RS16555	0.80	-0.9
3,755,348	-		PFLU_RS16555	0.80	-1.5
3,755,348	-		PFLU_RS16555	0.80	-0.5
3,755,348	-		PFLU_RS16555	0.80	-0.1
3,755,348	-		PFLU_RS16555	0.80	+0.9
3,755,348	-		PFLU_RS16555	0.80	+3.7
3,755,369	+		PFLU_RS16555	0.82	-0.3
3,755,370	-		PFLU_RS16555	0.82	-0.7
3,755,384	+		PFLU_RS16555	0.84	-0.2
3,755,426	+		PFLU_RS16555	0.88	-1.1
3,755,426	+		PFLU_RS16555	0.88	+3.1
3,755,426	+		PFLU_RS16555	0.88	-0.6
3,755,427	-		PFLU_RS16555	0.88	+1.3
3,755,427	-		PFLU_RS16555	0.88	-1.5
3,755,427	-		PFLU_RS16555	0.88	+0.1
3,755,427	-		PFLU_RS16555	0.88	-2.0
3,755,427	-		PFLU_RS16555	0.88	-0.3
3,755,427	-		PFLU_RS16555	0.88	+0.1
3,755,427	-		PFLU_RS16555	0.88	+0.4
3,755,427	-		PFLU_RS16555	0.88	-1.8
3,755,481	+				-1.1
3,755,481	+				-3.4
3,755,481	+				+1.4
3,755,481	+				-0.9
3,755,481	+				-1.6
3,755,481	+				+0.8
3,755,481	+				+4.1
3,755,481	+				-1.3
3,755,482	-				+0.6
3,755,482	-				-1.3
3,755,482	-				+0.7
3,755,588	+				-1.1
3,755,588	+				-1.6
3,755,588	+				-1.0
3,755,588	+				+0.5
3,755,589	-				+1.0
3,755,589	-				-0.3
3,755,589	-				+1.0
3,755,689	+		PFLU_RS16560	0.32	-0.9
3,755,689	+		PFLU_RS16560	0.32	-1.3
3,755,689	+		PFLU_RS16560	0.32	+0.7
3,755,689	+		PFLU_RS16560	0.32	-1.6
3,755,689	+		PFLU_RS16560	0.32	+0.6
3,755,689	+		PFLU_RS16560	0.32	+4.8
3,755,689	+		PFLU_RS16560	0.32	-1.1
3,755,689	+		PFLU_RS16560	0.32	+1.7
3,755,689	+		PFLU_RS16560	0.32	-1.6
3,755,689	+		PFLU_RS16560	0.32	+3.3
3,755,689	+		PFLU_RS16560	0.32	+0.7
3,755,689	+		PFLU_RS16560	0.32	-0.9
3,755,689	+		PFLU_RS16560	0.32	-0.6
3,755,689	+		PFLU_RS16560	0.32	-1.0
3,755,689	+		PFLU_RS16560	0.32	-0.6
3,755,689	+		PFLU_RS16560	0.32	-1.3
3,755,689	+		PFLU_RS16560	0.32	-0.3
3,755,689	+		PFLU_RS16560	0.32	+2.7
3,755,690	-		PFLU_RS16560	0.32	+1.7
3,755,690	-		PFLU_RS16560	0.32	-0.3
3,755,690	-		PFLU_RS16560	0.32	-1.9
3,755,690	-		PFLU_RS16560	0.32	+3.6
3,755,690	-		PFLU_RS16560	0.32	-1.3
3,755,690	-		PFLU_RS16560	0.32	+2.1
3,755,690	-		PFLU_RS16560	0.32	-0.5
3,755,690	-		PFLU_RS16560	0.32	-2.0
3,755,690	-		PFLU_RS16560	0.32	+1.7
3,755,690	-		PFLU_RS16560	0.32	-0.9
3,755,690	-		PFLU_RS16560	0.32	+0.7
3,755,690	-		PFLU_RS16560	0.32	+0.5
3,755,690	-		PFLU_RS16560	0.32	+0.7
3,755,690	-		PFLU_RS16560	0.32	+0.1
3,755,690	-		PFLU_RS16560	0.32	-2.4
3,755,690	-		PFLU_RS16560	0.32	+1.8
3,755,869	+		PFLU_RS16560	0.74	+0.7
3,755,870	-		PFLU_RS16560	0.74	+3.4
3,755,878	+		PFLU_RS16560	0.76	+0.7
3,755,878	+		PFLU_RS16560	0.76	+1.3
3,755,878	+		PFLU_RS16560	0.76	+0.1
3,755,878	+		PFLU_RS16560	0.76	-2.1
3,755,879	-		PFLU_RS16560	0.76	+0.2
3,755,879	-		PFLU_RS16560	0.76	+2.8
3,755,879	-		PFLU_RS16560	0.76	-2.0
3,755,879	-		PFLU_RS16560	0.76	-0.6
3,755,925	+		PFLU_RS16560	0.87	+0.7
3,755,925	+		PFLU_RS16560	0.87	-0.9
3,755,925	+		PFLU_RS16560	0.87	+1.8
3,755,925	+		PFLU_RS16560	0.87	+0.1
3,755,925	+		PFLU_RS16560	0.87	+2.7
3,755,926	-		PFLU_RS16560	0.87	-0.6
3,755,926	-		PFLU_RS16560	0.87	+0.1
3,755,977	+				+0.7
3,755,977	+				-2.8
3,755,977	+				-1.8
3,755,978	-				+0.4
3,755,978	-				-0.7
3,755,978	-				+0.3
3,755,978	-				-0.9
3,756,013	+				+3.4
3,756,014	-				-1.9
3,756,014	-				+2.0
3,756,014	-				-2.8
3,756,020	+				-2.4
3,756,020	+				-1.5
3,756,021	-				+2.4
3,756,034	-				+1.2
3,756,057	-				+3.0
3,756,092	-				-0.7
3,756,104	+				-1.5
3,756,105	-				+1.9
3,756,117	+				+0.9
3,756,117	+				-0.1
3,756,118	-				-1.5
3,756,157	-				+3.5
3,756,159	+				+3.6
3,756,160	-				+0.4
3,756,168	+				-1.6
3,756,168	+				-0.9
3,756,169	-				+1.5
3,756,169	-				-1.3
3,756,207	+				+0.1
3,756,207	+				+3.1
3,756,208	-				+0.0
3,756,208	-				-1.6
3,756,208	-				-1.6
3,756,214	+				-1.1
3,756,214	+				+1.4
3,756,214	+				-2.4
3,756,214	+				+0.1
3,756,214	+				+0.1
3,756,214	+				+0.1
3,756,214	+				+2.6
3,756,214	+				-0.3
3,756,214	+				+1.3
3,756,214	+				-0.6
3,756,214	+				+3.1
3,756,215	-				-1.8
3,756,215	-				+3.7
3,756,215	-				+1.6
3,756,215	-				+1.2
3,756,215	-				+0.1
3,756,215	-				+1.7
3,756,215	-				-1.1
3,756,215	-				-1.6
3,756,215	-				+2.5
3,756,278	+				+0.6
3,756,278	+				+2.7
3,756,301	+		PFLU_RS30870	0.13	+1.0
3,756,302	-		PFLU_RS30870	0.13	-1.1
3,756,321	+		PFLU_RS30870	0.15	+2.5
3,756,387	+		PFLU_RS30870	0.24	+3.0
3,756,575	+		PFLU_RS30870	0.50	-2.2
3,756,575	+		PFLU_RS30870	0.50	+0.5
3,756,576	-		PFLU_RS30870	0.50	+2.4
3,756,602	-		PFLU_RS30870	0.54	-1.0
3,756,602	-		PFLU_RS30870	0.54	+2.2
3,756,631	-		PFLU_RS30870	0.58	-1.5
3,756,638	-		PFLU_RS30870	0.59	-0.9
3,756,735	+		PFLU_RS30870	0.72	+0.1
3,756,735	+		PFLU_RS30870	0.72	-1.1
3,756,735	+		PFLU_RS30870	0.72	+2.4
3,756,735	+		PFLU_RS30870	0.72	-0.1
3,756,735	+		PFLU_RS30870	0.72	+1.1
3,756,735	+		PFLU_RS30870	0.72	+1.2
3,756,735	+		PFLU_RS30870	0.72	-0.6
3,756,736	-		PFLU_RS30870	0.72	+0.7
3,756,736	-		PFLU_RS30870	0.72	-0.5
3,756,736	-		PFLU_RS30870	0.72	+3.1
3,756,736	-		PFLU_RS30870	0.72	-0.6
3,756,736	-		PFLU_RS30870	0.72	-0.9
3,756,736	-		PFLU_RS30870	0.72	-1.3
3,756,755	+		PFLU_RS30870	0.75	+0.4
3,756,763	+		PFLU_RS30870	0.76	+0.7
3,756,763	+		PFLU_RS30870	0.76	-1.1
3,756,771	-		PFLU_RS30870	0.77	+2.0
3,756,771	-		PFLU_RS30870	0.77	+1.7
3,756,771	-		PFLU_RS30870	0.77	-0.6
3,756,799	-		PFLU_RS30870	0.81	-0.5
3,756,828	+		PFLU_RS30870	0.85	+4.0
3,756,828	+		PFLU_RS30870	0.85	-1.9
3,756,828	+		PFLU_RS30870	0.85	+1.9
3,756,828	+		PFLU_RS30870	0.85	+1.7
3,756,828	+		PFLU_RS30870	0.85	-0.6
3,756,828	+		PFLU_RS30870	0.85	-2.3
3,756,828	+		PFLU_RS30870	0.85	-1.3
3,756,828	+		PFLU_RS30870	0.85	+3.2
3,756,829	-		PFLU_RS30870	0.85	+2.8
3,756,832	+		PFLU_RS30870	0.85	+0.1
3,756,832	+		PFLU_RS30870	0.85	-0.6
3,756,901	+				-0.6
3,756,902	-				-0.9
3,756,911	+				+0.7