Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11145

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS11140 and PFLU_RS11145 are separated by 27 nucleotidesPFLU_RS11145 and PFLU_RS11150 overlap by 1 nucleotides PFLU_RS11140: PFLU_RS11140 - response regulator, at 2,458,030 to 2,461,761 _RS11140 PFLU_RS11145: PFLU_RS11145 - exported rhamnogalacturonase, at 2,461,789 to 2,463,372 _RS11145 PFLU_RS11150: PFLU_RS11150 - pectin lyase, at 2,463,372 to 2,464,625 _RS11150 Position (kb) 2461 2462 2463 2464Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2460.832 kb on + strand, within PFLU_RS11140at 2460.833 kb on - strand, within PFLU_RS11140at 2460.833 kb on - strand, within PFLU_RS11140at 2460.833 kb on - strand, within PFLU_RS11140at 2460.833 kb on - strand, within PFLU_RS11140at 2460.833 kb on - strand, within PFLU_RS11140at 2460.833 kb on - strand, within PFLU_RS11140at 2460.835 kb on - strand, within PFLU_RS11140at 2460.835 kb on - strand, within PFLU_RS11140at 2460.835 kb on - strand, within PFLU_RS11140at 2461.258 kb on + strand, within PFLU_RS11140at 2461.259 kb on - strand, within PFLU_RS11140at 2461.259 kb on - strand, within PFLU_RS11140at 2461.787 kb on + strandat 2461.787 kb on + strandat 2461.787 kb on + strandat 2461.788 kb on - strandat 2461.788 kb on - strandat 2461.788 kb on - strandat 2461.790 kb on + strandat 2461.790 kb on + strandat 2461.791 kb on - strandat 2461.791 kb on - strandat 2461.791 kb on - strandat 2461.932 kb on + strandat 2461.933 kb on - strandat 2462.183 kb on + strand, within PFLU_RS11145at 2462.183 kb on + strand, within PFLU_RS11145at 2462.183 kb on + strand, within PFLU_RS11145at 2462.183 kb on + strand, within PFLU_RS11145at 2462.183 kb on + strand, within PFLU_RS11145at 2462.183 kb on + strand, within PFLU_RS11145at 2462.183 kb on + strand, within PFLU_RS11145at 2462.183 kb on + strand, within PFLU_RS11145at 2462.184 kb on - strand, within PFLU_RS11145at 2462.184 kb on - strand, within PFLU_RS11145at 2462.184 kb on - strand, within PFLU_RS11145at 2462.184 kb on - strand, within PFLU_RS11145at 2462.393 kb on + strand, within PFLU_RS11145at 2462.422 kb on + strand, within PFLU_RS11145at 2462.423 kb on - strand, within PFLU_RS11145at 2462.423 kb on - strand, within PFLU_RS11145at 2462.423 kb on - strand, within PFLU_RS11145at 2462.423 kb on - strand, within PFLU_RS11145at 2462.654 kb on + strand, within PFLU_RS11145at 2462.678 kb on + strand, within PFLU_RS11145at 2462.711 kb on + strand, within PFLU_RS11145at 2462.711 kb on + strand, within PFLU_RS11145at 2462.711 kb on + strand, within PFLU_RS11145at 2462.711 kb on + strand, within PFLU_RS11145at 2462.711 kb on + strand, within PFLU_RS11145at 2462.711 kb on + strand, within PFLU_RS11145at 2462.711 kb on + strand, within PFLU_RS11145at 2462.711 kb on + strand, within PFLU_RS11145at 2462.712 kb on - strand, within PFLU_RS11145at 2462.712 kb on - strand, within PFLU_RS11145at 2462.712 kb on - strand, within PFLU_RS11145at 2462.712 kb on - strand, within PFLU_RS11145at 2462.712 kb on - strand, within PFLU_RS11145at 2462.712 kb on - strand, within PFLU_RS11145at 2462.717 kb on + strand, within PFLU_RS11145at 2462.717 kb on + strand, within PFLU_RS11145at 2462.718 kb on - strand, within PFLU_RS11145at 2462.718 kb on - strand, within PFLU_RS11145at 2462.718 kb on - strand, within PFLU_RS11145at 2462.718 kb on - strand, within PFLU_RS11145at 2462.807 kb on + strand, within PFLU_RS11145at 2462.807 kb on + strand, within PFLU_RS11145at 2462.808 kb on - strand, within PFLU_RS11145at 2462.808 kb on - strand, within PFLU_RS11145at 2462.808 kb on - strand, within PFLU_RS11145at 2462.808 kb on - strand, within PFLU_RS11145at 2462.808 kb on - strand, within PFLU_RS11145at 2462.808 kb on - strand, within PFLU_RS11145at 2462.808 kb on - strand, within PFLU_RS11145at 2463.033 kb on - strand, within PFLU_RS11145at 2463.044 kb on + strand, within PFLU_RS11145at 2463.044 kb on + strand, within PFLU_RS11145at 2463.044 kb on + strand, within PFLU_RS11145at 2463.044 kb on + strand, within PFLU_RS11145at 2463.044 kb on + strand, within PFLU_RS11145at 2463.044 kb on + strand, within PFLU_RS11145at 2463.044 kb on + strand, within PFLU_RS11145at 2463.045 kb on - strand, within PFLU_RS11145at 2463.045 kb on - strand, within PFLU_RS11145at 2463.045 kb on - strand, within PFLU_RS11145at 2463.045 kb on - strand, within PFLU_RS11145at 2463.074 kb on + strand, within PFLU_RS11145at 2463.074 kb on + strand, within PFLU_RS11145at 2463.074 kb on + strand, within PFLU_RS11145at 2463.074 kb on + strand, within PFLU_RS11145at 2463.074 kb on + strand, within PFLU_RS11145at 2463.074 kb on + strand, within PFLU_RS11145at 2463.074 kb on + strand, within PFLU_RS11145at 2463.074 kb on + strand, within PFLU_RS11145at 2463.074 kb on + strand, within PFLU_RS11145at 2463.074 kb on + strand, within PFLU_RS11145at 2463.074 kb on + strand, within PFLU_RS11145at 2463.075 kb on - strand, within PFLU_RS11145at 2463.075 kb on - strand, within PFLU_RS11145at 2463.075 kb on - strand, within PFLU_RS11145at 2463.078 kb on - strand, within PFLU_RS11145at 2463.140 kb on - strand, within PFLU_RS11145at 2463.140 kb on - strand, within PFLU_RS11145at 2463.267 kb on + strandat 2463.343 kb on - strandat 2463.343 kb on - strandat 2463.469 kb on + strandat 2463.469 kb on + strandat 2463.469 kb on + strandat 2463.469 kb on + strandat 2463.511 kb on + strand, within PFLU_RS11150at 2463.613 kb on + strand, within PFLU_RS11150at 2463.727 kb on + strand, within PFLU_RS11150at 2463.727 kb on + strand, within PFLU_RS11150at 2463.727 kb on + strand, within PFLU_RS11150at 2463.727 kb on + strand, within PFLU_RS11150at 2463.727 kb on + strand, within PFLU_RS11150at 2463.727 kb on + strand, within PFLU_RS11150at 2463.727 kb on + strand, within PFLU_RS11150at 2463.727 kb on + strand, within PFLU_RS11150at 2463.728 kb on - strand, within PFLU_RS11150at 2463.728 kb on - strand, within PFLU_RS11150at 2463.728 kb on - strand, within PFLU_RS11150at 2463.728 kb on - strand, within PFLU_RS11150at 2463.728 kb on - strand, within PFLU_RS11150at 2463.728 kb on - strand, within PFLU_RS11150at 2463.728 kb on - strand, within PFLU_RS11150at 2463.728 kb on - strand, within PFLU_RS11150at 2463.728 kb on - strand, within PFLU_RS11150at 2463.826 kb on + strand, within PFLU_RS11150at 2463.826 kb on + strand, within PFLU_RS11150at 2463.827 kb on - strand, within PFLU_RS11150at 2463.827 kb on - strand, within PFLU_RS11150at 2463.827 kb on - strand, within PFLU_RS11150at 2463.827 kb on - strand, within PFLU_RS11150at 2464.177 kb on - strand, within PFLU_RS11150at 2464.225 kb on + strand, within PFLU_RS11150at 2464.225 kb on + strand, within PFLU_RS11150at 2464.225 kb on + strand, within PFLU_RS11150at 2464.226 kb on - strand, within PFLU_RS11150at 2464.226 kb on - strand, within PFLU_RS11150

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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2,460,832 + PFLU_RS11140 0.75 +1.6
2,460,833 - PFLU_RS11140 0.75 +0.5
2,460,833 - PFLU_RS11140 0.75 +1.1
2,460,833 - PFLU_RS11140 0.75 +1.2
2,460,833 - PFLU_RS11140 0.75 +0.4
2,460,833 - PFLU_RS11140 0.75 -1.9
2,460,833 - PFLU_RS11140 0.75 -1.4
2,460,835 - PFLU_RS11140 0.75 -1.5
2,460,835 - PFLU_RS11140 0.75 -0.0
2,460,835 - PFLU_RS11140 0.75 +0.4
2,461,258 + PFLU_RS11140 0.86 -2.4
2,461,259 - PFLU_RS11140 0.87 -2.1
2,461,259 - PFLU_RS11140 0.87 -1.9
2,461,787 + +2.4
2,461,787 + -0.8
2,461,787 + -1.2
2,461,788 - -2.9
2,461,788 - +0.9
2,461,788 - +1.0
2,461,790 + +0.6
2,461,790 + +2.1
2,461,791 - -0.0
2,461,791 - -1.4
2,461,791 - -2.1
2,461,932 + -1.6
2,461,933 - -1.9
2,462,183 + PFLU_RS11145 0.25 +1.5
2,462,183 + PFLU_RS11145 0.25 +3.8
2,462,183 + PFLU_RS11145 0.25 +3.8
2,462,183 + PFLU_RS11145 0.25 -0.5
2,462,183 + PFLU_RS11145 0.25 +1.5
2,462,183 + PFLU_RS11145 0.25 +2.5
2,462,183 + PFLU_RS11145 0.25 -0.8
2,462,183 + PFLU_RS11145 0.25 -0.6
2,462,184 - PFLU_RS11145 0.25 -0.0
2,462,184 - PFLU_RS11145 0.25 +1.0
2,462,184 - PFLU_RS11145 0.25 -0.8
2,462,184 - PFLU_RS11145 0.25 -1.5
2,462,393 + PFLU_RS11145 0.38 -0.6
2,462,422 + PFLU_RS11145 0.40 +0.3
2,462,423 - PFLU_RS11145 0.40 -1.5
2,462,423 - PFLU_RS11145 0.40 +1.3
2,462,423 - PFLU_RS11145 0.40 +0.2
2,462,423 - PFLU_RS11145 0.40 +1.8
2,462,654 + PFLU_RS11145 0.55 +0.4
2,462,678 + PFLU_RS11145 0.56 +0.2
2,462,711 + PFLU_RS11145 0.58 +3.2
2,462,711 + PFLU_RS11145 0.58 +0.6
2,462,711 + PFLU_RS11145 0.58 -0.8
2,462,711 + PFLU_RS11145 0.58 +2.9
2,462,711 + PFLU_RS11145 0.58 +3.2
2,462,711 + PFLU_RS11145 0.58 -1.7
2,462,711 + PFLU_RS11145 0.58 +1.1
2,462,711 + PFLU_RS11145 0.58 -2.4
2,462,712 - PFLU_RS11145 0.58 +0.8
2,462,712 - PFLU_RS11145 0.58 -2.3
2,462,712 - PFLU_RS11145 0.58 +4.1
2,462,712 - PFLU_RS11145 0.58 -0.6
2,462,712 - PFLU_RS11145 0.58 +0.4
2,462,712 - PFLU_RS11145 0.58 +0.3
2,462,717 + PFLU_RS11145 0.59 -1.9
2,462,717 + PFLU_RS11145 0.59 +2.0
2,462,718 - PFLU_RS11145 0.59 +5.3
2,462,718 - PFLU_RS11145 0.59 +2.7
2,462,718 - PFLU_RS11145 0.59 -2.6
2,462,718 - PFLU_RS11145 0.59 -2.0
2,462,807 + PFLU_RS11145 0.64 +0.5
2,462,807 + PFLU_RS11145 0.64 -0.6
2,462,808 - PFLU_RS11145 0.64 -1.8
2,462,808 - PFLU_RS11145 0.64 +2.0
2,462,808 - PFLU_RS11145 0.64 -0.6
2,462,808 - PFLU_RS11145 0.64 -2.2
2,462,808 - PFLU_RS11145 0.64 +0.8
2,462,808 - PFLU_RS11145 0.64 -2.6
2,462,808 - PFLU_RS11145 0.64 +1.4
2,463,033 - PFLU_RS11145 0.79 +2.8
2,463,044 + PFLU_RS11145 0.79 -2.0
2,463,044 + PFLU_RS11145 0.79 -0.8
2,463,044 + PFLU_RS11145 0.79 +4.1
2,463,044 + PFLU_RS11145 0.79 -1.4
2,463,044 + PFLU_RS11145 0.79 +2.2
2,463,044 + PFLU_RS11145 0.79 +1.5
2,463,044 + PFLU_RS11145 0.79 -2.0
2,463,045 - PFLU_RS11145 0.79 +0.4
2,463,045 - PFLU_RS11145 0.79 -0.8
2,463,045 - PFLU_RS11145 0.79 -1.0
2,463,045 - PFLU_RS11145 0.79 +1.0
2,463,074 + PFLU_RS11145 0.81 -0.4
2,463,074 + PFLU_RS11145 0.81 -0.7
2,463,074 + PFLU_RS11145 0.81 +1.0
2,463,074 + PFLU_RS11145 0.81 +0.4
2,463,074 + PFLU_RS11145 0.81 -0.3
2,463,074 + PFLU_RS11145 0.81 +0.3
2,463,074 + PFLU_RS11145 0.81 -1.5
2,463,074 + PFLU_RS11145 0.81 +0.4
2,463,074 + PFLU_RS11145 0.81 +1.7
2,463,074 + PFLU_RS11145 0.81 +2.8
2,463,074 + PFLU_RS11145 0.81 +0.3
2,463,075 - PFLU_RS11145 0.81 -2.1
2,463,075 - PFLU_RS11145 0.81 +2.7
2,463,075 - PFLU_RS11145 0.81 -1.2
2,463,078 - PFLU_RS11145 0.81 -0.4
2,463,140 - PFLU_RS11145 0.85 -0.8
2,463,140 - PFLU_RS11145 0.85 -1.0
2,463,267 + -2.6
2,463,343 - +1.0
2,463,343 - +2.5
2,463,469 + -0.0
2,463,469 + -1.2
2,463,469 + -0.8
2,463,469 + +1.6
2,463,511 + PFLU_RS11150 0.11 +3.1
2,463,613 + PFLU_RS11150 0.19 -1.6
2,463,727 + PFLU_RS11150 0.28 -1.0
2,463,727 + PFLU_RS11150 0.28 -1.6
2,463,727 + PFLU_RS11150 0.28 -1.2
2,463,727 + PFLU_RS11150 0.28 +0.3
2,463,727 + PFLU_RS11150 0.28 +0.6
2,463,727 + PFLU_RS11150 0.28 -2.6
2,463,727 + PFLU_RS11150 0.28 -0.0
2,463,727 + PFLU_RS11150 0.28 +1.2
2,463,728 - PFLU_RS11150 0.28 -1.7
2,463,728 - PFLU_RS11150 0.28 +2.4
2,463,728 - PFLU_RS11150 0.28 +0.4
2,463,728 - PFLU_RS11150 0.28 +2.5
2,463,728 - PFLU_RS11150 0.28 +1.4
2,463,728 - PFLU_RS11150 0.28 -1.2
2,463,728 - PFLU_RS11150 0.28 -1.4
2,463,728 - PFLU_RS11150 0.28 +3.3
2,463,728 - PFLU_RS11150 0.28 +3.7
2,463,826 + PFLU_RS11150 0.36 +2.7
2,463,826 + PFLU_RS11150 0.36 -2.2
2,463,827 - PFLU_RS11150 0.36 +0.4
2,463,827 - PFLU_RS11150 0.36 -0.6
2,463,827 - PFLU_RS11150 0.36 -1.7
2,463,827 - PFLU_RS11150 0.36 +2.0
2,464,177 - PFLU_RS11150 0.64 -0.6
2,464,225 + PFLU_RS11150 0.68 -0.8
2,464,225 + PFLU_RS11150 0.68 -0.6
2,464,225 + PFLU_RS11150 0.68 -2.9
2,464,226 - PFLU_RS11150 0.68 +2.0
2,464,226 - PFLU_RS11150 0.68 +2.8

Or see this region's nucleotide sequence