Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS09325

Experiment: Growth at pH9 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) Trisodium citrate
2,062,507	+		PFLU_RS09320	0.40	-1.9
2,062,508	-		PFLU_RS09320	0.40	-1.8
2,062,508	-		PFLU_RS09320	0.40	-1.3
2,062,554	+		PFLU_RS09320	0.43	-1.4
2,062,554	+		PFLU_RS09320	0.43	-0.4
2,062,555	-		PFLU_RS09320	0.43	+0.5
2,062,555	-		PFLU_RS09320	0.43	-1.2
2,062,565	+		PFLU_RS09320	0.44	-2.4
2,062,566	-		PFLU_RS09320	0.44	-0.9
2,062,587	-		PFLU_RS09320	0.46	-0.5
2,062,602	-		PFLU_RS09320	0.46	+0.3
2,062,639	-		PFLU_RS09320	0.49	+0.1
2,062,710	+		PFLU_RS09320	0.53	+2.4
2,062,710	+		PFLU_RS09320	0.53	-0.9
2,062,711	-		PFLU_RS09320	0.54	-1.8
2,062,711	-		PFLU_RS09320	0.54	+0.9
2,062,711	-		PFLU_RS09320	0.54	+2.4
2,062,736	+		PFLU_RS09320	0.55	-2.1
2,062,736	+		PFLU_RS09320	0.55	-1.8
2,062,736	+		PFLU_RS09320	0.55	-1.3
2,062,736	+		PFLU_RS09320	0.55	+2.4
2,062,737	-		PFLU_RS09320	0.55	-0.6
2,062,737	-		PFLU_RS09320	0.55	+3.3
2,062,752	+		PFLU_RS09320	0.56	-1.1
2,062,753	-		PFLU_RS09320	0.56	-1.4
2,062,753	-		PFLU_RS09320	0.56	-0.5
2,062,775	+		PFLU_RS09320	0.58	+2.0
2,062,775	+		PFLU_RS09320	0.58	+1.1
2,062,775	+		PFLU_RS09320	0.58	-2.2
2,062,775	+		PFLU_RS09320	0.58	-0.7
2,062,776	-		PFLU_RS09320	0.58	+0.1
2,062,780	+		PFLU_RS09320	0.58	-1.8
2,062,780	+		PFLU_RS09320	0.58	-0.9
2,062,780	+		PFLU_RS09320	0.58	+1.8
2,062,780	+		PFLU_RS09320	0.58	+3.1
2,062,780	+		PFLU_RS09320	0.58	+2.5
2,062,780	+		PFLU_RS09320	0.58	+2.1
2,062,780	+		PFLU_RS09320	0.58	+1.3
2,062,781	-		PFLU_RS09320	0.58	+2.5
2,062,814	+		PFLU_RS09320	0.60	-0.3
2,062,843	+		PFLU_RS09320	0.62	-0.3
2,062,843	+		PFLU_RS09320	0.62	+0.1
2,062,843	+		PFLU_RS09320	0.62	+2.5
2,062,843	+		PFLU_RS09320	0.62	-0.7
2,062,843	+		PFLU_RS09320	0.62	+1.4
2,062,843	+		PFLU_RS09320	0.62	-1.1
2,062,843	+		PFLU_RS09320	0.62	+0.8
2,062,843	+		PFLU_RS09320	0.62	-1.1
2,062,843	+		PFLU_RS09320	0.62	-1.6
2,062,843	+		PFLU_RS09320	0.62	-1.1
2,062,843	+		PFLU_RS09320	0.62	-1.4
2,062,844	-		PFLU_RS09320	0.62	-1.6
2,062,844	-		PFLU_RS09320	0.62	+3.3
2,062,844	-		PFLU_RS09320	0.62	+0.7
2,062,844	-		PFLU_RS09320	0.62	-1.5
2,062,847	+		PFLU_RS09320	0.62	+2.6
2,062,847	+		PFLU_RS09320	0.62	+1.8
2,062,847	+		PFLU_RS09320	0.62	+2.4
2,062,847	+		PFLU_RS09320	0.62	+1.2
2,062,847	+		PFLU_RS09320	0.62	-2.1
2,062,847	+		PFLU_RS09320	0.62	+0.3
2,062,847	+		PFLU_RS09320	0.62	-2.2
2,062,847	+		PFLU_RS09320	0.62	-0.7
2,062,847	+		PFLU_RS09320	0.62	-1.8
2,062,847	+		PFLU_RS09320	0.62	+2.7
2,062,847	+		PFLU_RS09320	0.62	+0.7
2,062,847	+		PFLU_RS09320	0.62	-1.3
2,062,847	+		PFLU_RS09320	0.62	-1.1
2,062,847	+		PFLU_RS09320	0.62	+3.4
2,062,847	+		PFLU_RS09320	0.62	-2.0
2,062,847	+		PFLU_RS09320	0.62	+0.5
2,062,847	+		PFLU_RS09320	0.62	-1.3
2,062,847	+		PFLU_RS09320	0.62	-1.1
2,062,847	+		PFLU_RS09320	0.62	-0.5
2,062,847	+		PFLU_RS09320	0.62	-0.3
2,062,847	+		PFLU_RS09320	0.62	-0.5
2,062,847	+		PFLU_RS09320	0.62	-0.3
2,062,847	+		PFLU_RS09320	0.62	+0.4
2,062,847	+		PFLU_RS09320	0.62	+0.1
2,062,848	-		PFLU_RS09320	0.62	+4.0
2,062,848	-		PFLU_RS09320	0.62	-0.9
2,062,848	-		PFLU_RS09320	0.62	-1.2
2,062,848	-		PFLU_RS09320	0.62	+1.3
2,062,848	-		PFLU_RS09320	0.62	+0.5
2,062,848	-		PFLU_RS09320	0.62	+1.3
2,062,848	-		PFLU_RS09320	0.62	-2.3
2,062,848	-		PFLU_RS09320	0.62	-1.3
2,062,848	-		PFLU_RS09320	0.62	+1.2
2,062,848	-		PFLU_RS09320	0.62	-3.1
2,062,848	-		PFLU_RS09320	0.62	-1.9
2,062,848	-		PFLU_RS09320	0.62	-1.5
2,062,848	-		PFLU_RS09320	0.62	-0.9
2,062,848	-		PFLU_RS09320	0.62	+1.3
2,062,848	-		PFLU_RS09320	0.62	-0.9
2,062,848	-		PFLU_RS09320	0.62	+0.5
2,062,848	-		PFLU_RS09320	0.62	-0.7
2,062,848	-		PFLU_RS09320	0.62	-0.9
2,062,848	-		PFLU_RS09320	0.62	+0.9
2,062,853	+		PFLU_RS09320	0.63	-2.5
2,062,853	+		PFLU_RS09320	0.63	+0.1
2,062,853	+		PFLU_RS09320	0.63	-1.7
2,062,853	+		PFLU_RS09320	0.63	-1.5
2,062,854	-		PFLU_RS09320	0.63	-0.5
2,062,854	-		PFLU_RS09320	0.63	+1.1
2,062,868	+		PFLU_RS09320	0.64	-0.1
2,062,868	+		PFLU_RS09320	0.64	-1.3
2,062,869	-		PFLU_RS09320	0.64	-0.8
2,062,869	-		PFLU_RS09320	0.64	-0.5
2,062,869	-		PFLU_RS09320	0.64	-1.7
2,062,869	-		PFLU_RS09320	0.64	-0.3
2,062,869	-		PFLU_RS09320	0.64	-0.8
2,062,876	+		PFLU_RS09320	0.64	-0.7
2,062,876	+		PFLU_RS09320	0.64	-0.9
2,062,892	+		PFLU_RS09320	0.65	-2.0
2,062,893	-		PFLU_RS09320	0.65	-1.6
2,062,899	+		PFLU_RS09320	0.66	-2.3
2,062,899	+		PFLU_RS09320	0.66	-2.3
2,062,899	+		PFLU_RS09320	0.66	-2.3
2,062,900	-		PFLU_RS09320	0.66	-1.3
2,062,920	-		PFLU_RS09320	0.67	+0.1
2,062,920	-		PFLU_RS09320	0.67	+4.1
2,062,932	-		PFLU_RS09320	0.68	+0.4
2,063,041	+		PFLU_RS09320	0.75	+0.1
2,063,041	+		PFLU_RS09320	0.75	+1.1
2,063,042	-		PFLU_RS09320	0.75	+1.0
2,063,078	+		PFLU_RS09320	0.77	+0.5
2,063,079	-		PFLU_RS09320	0.77	-0.3
2,063,125	+		PFLU_RS09320	0.80	+1.1
2,063,125	+		PFLU_RS09320	0.80	-1.1
2,063,125	+		PFLU_RS09320	0.80	-2.0
2,063,126	-		PFLU_RS09320	0.80	-0.7
2,063,126	-		PFLU_RS09320	0.80	-0.5
2,063,126	-		PFLU_RS09320	0.80	+2.7
2,063,126	-		PFLU_RS09320	0.80	+2.0
2,063,278	+				-2.5
2,063,278	+				-0.1
2,063,279	-				+1.7
2,063,279	-				-0.8
2,063,292	+				+3.2
2,063,292	+				-1.5
2,063,292	+				+1.6
2,063,293	-				-0.9
2,063,293	-				-1.4
2,063,293	-				-2.2
2,063,293	-				-1.1
2,063,293	-				-0.3
2,063,385	+				-0.8
2,063,385	+				+1.1
2,063,385	+				+1.4
2,063,385	+				-0.6
2,063,385	+				-1.3
2,063,385	+				-0.3
2,063,385	+				-0.9
2,063,385	+				-2.3
2,063,385	+				-0.8
2,063,385	+				+2.9
2,063,385	+				-2.0
2,063,385	+				-1.5
2,063,385	+				+1.4
2,063,385	+				+0.9
2,063,385	+				-1.3
2,063,385	+				+2.8
2,063,385	+				-0.9
2,063,385	+				-0.5
2,063,385	+				+1.6
2,063,385	+				+0.5
2,063,385	+				+0.4
2,063,385	+				-1.3
2,063,385	+				+0.6
2,063,385	+				-1.5
2,063,385	+				+2.7
2,063,386	-				-0.6
2,063,386	-				-1.7
2,063,386	-				-1.3
2,063,386	-				-1.7
2,063,386	-				+3.4
2,063,386	-				-1.8
2,063,386	-				-1.7
2,063,386	-				-1.5
2,063,386	-				+3.5
2,063,386	-				+0.9
2,063,386	-				-1.7
2,063,386	-				-1.6
2,063,386	-				-2.2
2,063,386	-				-2.0
2,063,386	-				+2.7
2,063,386	-				-0.9
2,063,386	-				-1.8
2,063,386	-				-0.9
2,063,386	-				-0.9
2,063,386	-				-1.8
2,063,386	-				-1.4
2,063,399	+				+1.7
2,063,399	+				-1.4
2,063,399	+				-1.5
2,063,399	+				+3.1
2,063,399	+				+2.1
2,063,399	+				-2.4
2,063,400	-				+0.8
2,063,402	+				+1.9
2,063,402	+				-0.3
2,063,403	-				-2.3
2,063,403	-				+1.7
2,063,403	-				-0.9
2,063,403	-				-1.5
2,063,403	-				-1.1
2,063,403	-				-1.8
2,063,403	-				-1.1
2,063,445	+				-0.9
2,063,460	+				-1.4
2,063,460	+				+0.7
2,063,460	+				-0.3
2,063,460	+				-0.8
2,063,460	+				-2.4
2,063,460	+				-2.5
2,063,460	+				+1.2
2,063,460	+				+2.8
2,063,461	-				-2.6
2,063,461	-				-2.6
2,063,461	-				+1.1
2,063,461	-				+1.7
2,063,461	-				-0.9
2,063,494	+				-2.9
2,063,495	-				+3.1
2,063,495	-				-1.9
2,063,555	+		PFLU_RS09325	0.17	-1.6
2,063,555	+		PFLU_RS09325	0.17	-0.4
2,063,574	+		PFLU_RS09325	0.19	+0.5
2,063,574	+		PFLU_RS09325	0.19	+0.4
2,063,574	+		PFLU_RS09325	0.19	-2.5
2,063,609	+		PFLU_RS09325	0.24	+1.0
2,063,609	+		PFLU_RS09325	0.24	-1.8
2,063,645	+		PFLU_RS09325	0.29	+2.6
2,063,646	-		PFLU_RS09325	0.29	-1.8
2,063,646	-		PFLU_RS09325	0.29	-0.7
2,063,646	-		PFLU_RS09325	0.29	-1.0
2,063,678	+		PFLU_RS09325	0.33	+2.1
2,063,678	+		PFLU_RS09325	0.33	+2.1
2,063,678	+		PFLU_RS09325	0.33	+0.1
2,063,678	+		PFLU_RS09325	0.33	+2.1
2,063,678	+		PFLU_RS09325	0.33	+2.7
2,063,678	+		PFLU_RS09325	0.33	-1.5
2,063,678	+		PFLU_RS09325	0.33	+0.8
2,063,678	+		PFLU_RS09325	0.33	+0.5
2,063,679	-		PFLU_RS09325	0.33	+0.1
2,063,679	-		PFLU_RS09325	0.33	-0.3
2,063,679	-		PFLU_RS09325	0.33	+1.5
2,063,679	-		PFLU_RS09325	0.33	-2.0
2,063,679	-		PFLU_RS09325	0.33	-2.2
2,063,679	-		PFLU_RS09325	0.33	-0.0
2,063,679	-		PFLU_RS09325	0.33	-0.5
2,063,688	+		PFLU_RS09325	0.35	+0.7
2,063,689	-		PFLU_RS09325	0.35	-1.6
2,063,689	-		PFLU_RS09325	0.35	+1.8
2,063,689	-		PFLU_RS09325	0.35	-2.1
2,063,827	+		PFLU_RS09325	0.53	-1.5
2,063,869	+		PFLU_RS09325	0.59	-0.3
2,063,870	-		PFLU_RS09325	0.59	-2.2
2,063,870	-		PFLU_RS09325	0.59	-1.7
2,063,890	-		PFLU_RS09325	0.62	-0.7
2,063,894	+		PFLU_RS09325	0.62	+1.1
2,063,894	+		PFLU_RS09325	0.62	-1.4
2,063,894	+		PFLU_RS09325	0.62	-0.5
2,063,894	+		PFLU_RS09325	0.62	-0.9
2,063,894	+		PFLU_RS09325	0.62	-1.5
2,063,895	-		PFLU_RS09325	0.62	-1.4
2,063,895	-		PFLU_RS09325	0.62	+2.5
2,063,895	-		PFLU_RS09325	0.62	+1.1
2,063,895	-		PFLU_RS09325	0.62	-1.9
2,063,895	-		PFLU_RS09325	0.62	+0.1
2,063,895	-		PFLU_RS09325	0.62	+2.1
2,063,895	-		PFLU_RS09325	0.62	+2.1
2,063,895	-		PFLU_RS09325	0.62	+0.1
2,063,895	-		PFLU_RS09325	0.62	-2.1
2,063,921	+		PFLU_RS09325	0.66	-0.9
2,063,922	-		PFLU_RS09325	0.66	-1.7
2,063,922	-		PFLU_RS09325	0.66	+0.2
2,063,924	+		PFLU_RS09325	0.66	-0.0
2,063,925	-		PFLU_RS09325	0.66	+1.4
2,063,925	-		PFLU_RS09325	0.66	-0.9
2,063,925	-		PFLU_RS09325	0.66	+0.1
2,063,925	-		PFLU_RS09325	0.66	-1.2
2,063,925	-		PFLU_RS09325	0.66	+0.5
2,063,930	+		PFLU_RS09325	0.67	-0.5
2,063,930	+		PFLU_RS09325	0.67	+0.5
2,063,930	+		PFLU_RS09325	0.67	-1.5
2,063,930	+		PFLU_RS09325	0.67	-2.1
2,063,930	+		PFLU_RS09325	0.67	+2.8
2,063,930	+		PFLU_RS09325	0.67	+0.5
2,063,930	+		PFLU_RS09325	0.67	-0.6
2,063,930	+		PFLU_RS09325	0.67	+2.0
2,063,930	+		PFLU_RS09325	0.67	+1.7
2,063,930	+		PFLU_RS09325	0.67	-2.3
2,063,931	-		PFLU_RS09325	0.67	+0.1
2,063,931	-		PFLU_RS09325	0.67	-1.4
2,063,931	-		PFLU_RS09325	0.67	+1.1
2,063,931	-		PFLU_RS09325	0.67	-0.5
2,063,931	-		PFLU_RS09325	0.67	-2.1
2,063,931	-		PFLU_RS09325	0.67	-0.2
2,063,931	-		PFLU_RS09325	0.67	-1.3
2,063,931	-		PFLU_RS09325	0.67	-1.3
2,063,931	-		PFLU_RS09325	0.67	+1.8
2,063,931	-		PFLU_RS09325	0.67	-0.3
2,063,931	-		PFLU_RS09325	0.67	+1.8
2,063,931	-		PFLU_RS09325	0.67	+2.5
2,063,931	-		PFLU_RS09325	0.67	+3.3
2,063,931	-		PFLU_RS09325	0.67	+0.0
2,063,931	-		PFLU_RS09325	0.67	-1.4
2,064,024	+		PFLU_RS09325	0.79	+1.8
2,064,024	+		PFLU_RS09325	0.79	+1.0
2,064,024	+		PFLU_RS09325	0.79	-1.3
2,064,035	-		PFLU_RS09325	0.81	-0.9
2,064,040	-		PFLU_RS09325	0.82	+1.7
2,064,052	+		PFLU_RS09325	0.83	-0.5
2,064,053	-		PFLU_RS09325	0.83	-0.3
2,064,053	-		PFLU_RS09325	0.83	+1.7
2,064,053	-		PFLU_RS09325	0.83	+1.4
2,064,100	-		PFLU_RS09325	0.90	-1.4
2,064,121	-				-1.1
2,064,122	+				-0.3
2,064,122	+				-1.5
2,064,123	-				+0.5
2,064,123	-				-1.3
2,064,123	-				-0.5
2,064,123	-				+1.2
2,064,123	-				+2.1
2,064,123	-				-0.7
2,064,176	-				-0.5
2,064,190	-				+2.3
2,064,204	+				-0.9
2,064,204	+				-0.5
2,064,205	-				+0.1
2,064,279	-				-0.3
2,064,279	-				-0.7
2,064,281	-				+3.8
2,064,293	+				+0.8
2,064,306	-				-1.1
2,064,324	+				-0.3
2,064,325	-				-2.0
2,064,355	+				-1.8
2,064,355	+				+0.3
2,064,358	+				+1.9
2,064,358	+				-1.7
2,064,359	-				-1.4
2,064,378	-				-0.5
2,064,378	-				-1.3
2,064,383	+				-2.1
2,064,387	+				+1.3
2,064,436	+		PFLU_RS30555	0.75	-1.3
2,064,436	+		PFLU_RS30555	0.75	-1.6
2,064,436	+		PFLU_RS30555	0.75	-0.3
2,064,437	-		PFLU_RS30555	0.76	+0.1
2,064,453	+				-2.6
2,064,490	+				-2.1
2,064,490	+				+0.1
2,064,491	-				-2.5
2,064,491	-				+1.0
2,064,511	+				-1.7
2,064,512	-				+0.3
2,064,512	-				-0.9
2,064,512	-				-0.7
2,064,568	+				-0.3
2,064,568	+				+1.8
2,064,575	+				-2.1
2,064,575	+				+0.1
2,064,575	+				-4.0
2,064,575	+				-2.0
2,064,576	-				-0.7
2,064,579	+				-0.7
2,064,580	-				+1.6
2,064,588	-				-1.1
2,064,588	-				-1.9
2,064,621	+				+1.1
2,064,630	-				+2.0
2,064,630	-				+3.4
2,064,630	-				+0.5
2,064,633	+				-0.7
2,064,633	+				-1.6
2,064,650	-				+0.7
2,064,689	-		PFLU_RS09330	0.13	-1.8
2,064,703	+		PFLU_RS09330	0.16	+1.1
2,064,703	+		PFLU_RS09330	0.16	-2.1
2,064,704	-		PFLU_RS09330	0.17	-1.5
2,064,704	-		PFLU_RS09330	0.17	-0.1
2,064,720	+		PFLU_RS09330	0.21	+1.7
2,064,720	+		PFLU_RS09330	0.21	+1.1
2,064,738	+		PFLU_RS09330	0.25	+0.1
2,064,738	+		PFLU_RS09330	0.25	+0.8
2,064,738	+		PFLU_RS09330	0.25	+1.5
2,064,738	+		PFLU_RS09330	0.25	-0.3
2,064,739	-		PFLU_RS09330	0.26	+3.1
2,064,739	-		PFLU_RS09330	0.26	-0.9
2,064,739	-		PFLU_RS09330	0.26	+3.0
2,064,780	+		PFLU_RS09330	0.36	-2.1
2,064,780	+		PFLU_RS09330	0.36	+3.0
2,064,780	+		PFLU_RS09330	0.36	-1.5
2,064,781	-		PFLU_RS09330	0.37	-1.4
2,064,885	+		PFLU_RS09330	0.64	+0.1
2,064,885	+		PFLU_RS09330	0.64	-2.3
2,064,886	-		PFLU_RS09330	0.64	-1.3
2,064,886	-		PFLU_RS09330	0.64	-1.8
2,064,908	+		PFLU_RS09330	0.70	+2.4
2,064,908	+		PFLU_RS09330	0.70	-2.1
2,064,909	-		PFLU_RS09330	0.70	-1.1
2,064,914	+		PFLU_RS09330	0.72	-0.9
2,064,914	+		PFLU_RS09330	0.72	-2.4
2,064,914	+		PFLU_RS09330	0.72	-1.9
2,064,974	+		PFLU_RS09330	0.87	-1.6
2,064,974	+		PFLU_RS09330	0.87	-1.8
2,064,974	+		PFLU_RS09330	0.87	+0.7
2,064,974	+		PFLU_RS09330	0.87	-0.7
2,064,974	+		PFLU_RS09330	0.87	+0.5
2,064,975	-		PFLU_RS09330	0.88	-1.4
2,064,975	-		PFLU_RS09330	0.88	+2.0
2,064,975	-		PFLU_RS09330	0.88	-1.6
2,065,021	+				-1.9
2,065,021	+				-0.9
2,065,021	+				+0.6
2,065,021	+				-1.5
2,065,022	-				-0.7
2,065,022	-				+0.4
2,065,022	-				+2.3
2,065,022	-				+0.1
2,065,022	-				+0.1
2,065,025	+				+1.6
2,065,025	+				+0.2
2,065,026	-				-2.4
2,065,026	-				-1.5
2,065,026	-				-1.4
2,065,026	-				-0.4
2,065,074	+				-0.1
2,065,075	-				-2.6
2,065,077	+				+1.2
2,065,077	+				-0.3
2,065,092	+				+1.2
2,065,092	+				-1.3
2,065,113	+				-2.5
2,065,126	+				-0.3
2,065,141	+				-0.4
2,065,141	+				+1.8
2,065,141	+				+0.8
2,065,142	-				-2.5
2,065,142	-				+1.4
2,065,144	+				-0.6