Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08880

Experiment: Growth at pH9 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) Trisodium citrate
1,967,718	+				+0.5
1,967,719	-				+0.4
1,967,719	-				-0.9
1,967,875	+				+1.7
1,967,875	+				-1.6
1,967,875	+				-0.9
1,967,875	+				-0.2
1,967,875	+				+4.0
1,967,875	+				+2.7
1,967,875	+				-2.0
1,967,875	+				+0.2
1,967,875	+				+4.2
1,967,875	+				+1.1
1,967,875	+				-0.7
1,967,875	+				+2.1
1,967,875	+				+0.8
1,967,875	+				+3.1
1,967,875	+				-0.9
1,967,875	+				+3.1
1,967,875	+				+0.5
1,967,875	+				-1.8
1,967,875	+				-2.3
1,967,875	+				-0.6
1,967,875	+				-2.3
1,967,875	+				-2.3
1,967,876	-				-0.7
1,967,876	-				-0.2
1,967,876	-				+3.3
1,967,876	-				-2.0
1,967,876	-				-1.2
1,967,876	-				+0.4
1,967,876	-				-0.2
1,967,876	-				-0.2
1,967,876	-				-2.1
1,967,876	-				+2.6
1,967,876	-				-0.0
1,967,876	-				-0.7
1,967,876	-				+1.1
1,967,876	-				+4.9
1,967,876	-				+1.9
1,967,876	-				+2.6
1,967,876	-				+3.5
1,967,876	-				-0.7
1,967,876	-				+3.6
1,967,876	-				-1.0
1,967,908	+				+0.3
1,967,909	-				+0.5
1,967,910	+				-0.0
1,967,910	+				-0.7
1,967,911	-				+4.7
1,967,911	-				-0.5
1,967,911	-				+1.5
1,967,951	+				+0.5
1,967,951	+				+1.0
1,967,951	+				+4.4
1,967,951	+				-1.8
1,967,951	+				+3.6
1,967,951	+				-0.5
1,967,951	+				+0.7
1,967,951	+				+0.2
1,967,951	+				+3.2
1,967,951	+				-2.0
1,967,951	+				-2.6
1,967,951	+				+0.3
1,967,951	+				+0.5
1,967,951	+				-2.0
1,967,951	+				+1.6
1,967,951	+				+1.8
1,967,951	+				+4.9
1,967,951	+				-0.8
1,967,951	+				+1.5
1,967,951	+				+1.7
1,967,951	+				+1.1
1,967,951	+				-1.4
1,967,951	+				+0.3
1,967,951	+				+0.5
1,967,951	+				-1.2
1,967,951	+				-0.1
1,967,951	+				-1.6
1,967,952	-				-0.2
1,967,952	-				-1.5
1,967,952	-				+3.7
1,967,952	-				+1.4
1,967,952	-				-0.5
1,967,952	-				-1.4
1,967,952	-				-1.5
1,967,952	-				+1.9
1,967,952	-				-1.8
1,967,952	-				+1.4
1,967,952	-				-2.5
1,967,952	-				-1.5
1,967,952	-				+0.5
1,967,952	-				-1.4
1,967,952	-				+1.7
1,967,952	-				+0.1
1,967,952	-				+0.1
1,967,952	-				+1.4
1,967,952	-				-1.3
1,967,952	-				+2.9
1,967,952	-				-1.6
1,967,952	-				-0.1
1,967,952	-				-0.8
1,967,952	-				-2.1
1,967,952	-				+0.1
1,967,952	-				-1.0
1,967,952	-				+0.8
1,967,952	-				-0.7
1,967,952	-				+2.7
1,967,952	-				+0.2
1,967,952	-				+2.7
1,968,005	-				-0.1
1,968,085	+				+0.4
1,968,324	-		PFLU_RS08875	0.56	-0.7
1,968,434	+		PFLU_RS08875	0.81	-1.6
1,968,435	-		PFLU_RS08875	0.82	+1.5
1,968,435	-		PFLU_RS08875	0.82	-2.6
1,968,532	-				-2.0
1,968,630	+				+1.9
1,968,631	-				+1.5
1,968,631	-				+0.5
1,968,631	-				-2.7
1,968,690	+				-2.0
1,968,690	+				-0.7
1,968,691	-				-1.8
1,968,691	-				-1.9
1,968,691	-				-1.0
1,968,753	+		PFLU_RS08880	0.20	+1.7
1,968,753	+		PFLU_RS08880	0.20	+2.1
1,968,753	+		PFLU_RS08880	0.20	+0.5
1,968,753	+		PFLU_RS08880	0.20	+3.2
1,968,753	+		PFLU_RS08880	0.20	+0.1
1,968,753	+		PFLU_RS08880	0.20	+1.4
1,968,754	-		PFLU_RS08880	0.20	+0.1
1,968,754	-		PFLU_RS08880	0.20	+3.8
1,968,754	-		PFLU_RS08880	0.20	+3.4
1,968,754	-		PFLU_RS08880	0.20	+1.3
1,968,754	-		PFLU_RS08880	0.20	+2.4
1,968,754	-		PFLU_RS08880	0.20	+2.9
1,968,929	+		PFLU_RS08880	0.49	+0.1
1,968,929	+		PFLU_RS08880	0.49	+0.8
1,968,930	-		PFLU_RS08880	0.49	+2.9
1,968,981	+		PFLU_RS08880	0.58	+0.2
1,968,981	+		PFLU_RS08880	0.58	-1.0
1,968,981	+		PFLU_RS08880	0.58	-1.8
1,968,981	+		PFLU_RS08880	0.58	-2.0
1,968,981	+		PFLU_RS08880	0.58	-1.3
1,968,981	+		PFLU_RS08880	0.58	+2.2
1,968,981	+		PFLU_RS08880	0.58	-2.0
1,968,981	+		PFLU_RS08880	0.58	-1.4
1,968,981	+		PFLU_RS08880	0.58	+0.4
1,968,982	-		PFLU_RS08880	0.58	-1.4
1,968,982	-		PFLU_RS08880	0.58	+1.9
1,968,982	-		PFLU_RS08880	0.58	-0.9
1,968,982	-		PFLU_RS08880	0.58	-0.9
1,969,051	+		PFLU_RS08880	0.69	+4.1
1,969,054	+		PFLU_RS08880	0.70	-0.2
1,969,054	+		PFLU_RS08880	0.70	+1.1
1,969,054	+		PFLU_RS08880	0.70	-1.0
1,969,055	-		PFLU_RS08880	0.70	+1.1
1,969,055	-		PFLU_RS08880	0.70	+0.8
1,969,074	+		PFLU_RS08880	0.73	-0.9
1,969,098	+		PFLU_RS08880	0.77	-2.6
1,969,098	+		PFLU_RS08880	0.77	-0.7
1,969,098	+		PFLU_RS08880	0.77	+1.5
1,969,098	+		PFLU_RS08880	0.77	+1.8
1,969,098	+		PFLU_RS08880	0.77	-0.0
1,969,098	+		PFLU_RS08880	0.77	+4.7
1,969,099	-		PFLU_RS08880	0.77	+0.4
1,969,099	-		PFLU_RS08880	0.77	-0.1
1,969,099	-		PFLU_RS08880	0.77	+1.0
1,969,099	-		PFLU_RS08880	0.77	-1.7
1,969,099	-		PFLU_RS08880	0.77	+3.0
1,969,099	-		PFLU_RS08880	0.77	-1.5
1,969,101	+		PFLU_RS08880	0.77	+3.5
1,969,101	+		PFLU_RS08880	0.77	+0.5
1,969,101	+		PFLU_RS08880	0.77	-1.1
1,969,101	+		PFLU_RS08880	0.77	-2.3
1,969,101	+		PFLU_RS08880	0.77	-2.0
1,969,101	+		PFLU_RS08880	0.77	-1.0
1,969,101	+		PFLU_RS08880	0.77	-1.9
1,969,102	-		PFLU_RS08880	0.78	-1.0
1,969,102	-		PFLU_RS08880	0.78	+1.2
1,969,102	-		PFLU_RS08880	0.78	+2.1
1,969,104	+		PFLU_RS08880	0.78	+1.1
1,969,104	+		PFLU_RS08880	0.78	+2.5
1,969,104	+		PFLU_RS08880	0.78	+0.3
1,969,104	+		PFLU_RS08880	0.78	+1.5
1,969,104	+		PFLU_RS08880	0.78	+1.4
1,969,105	-		PFLU_RS08880	0.78	+1.9
1,969,105	-		PFLU_RS08880	0.78	+2.8
1,969,105	-		PFLU_RS08880	0.78	+3.1
1,969,105	-		PFLU_RS08880	0.78	-2.1
1,969,105	-		PFLU_RS08880	0.78	-0.5
1,969,105	-		PFLU_RS08880	0.78	-1.2
1,969,237	+				-1.0
1,969,237	+				-2.3
1,969,237	+				-0.5
1,969,238	-				-2.2
1,969,279	+				+0.7
1,969,279	+				-2.7
1,969,279	+				-1.2
1,969,279	+				-1.0
1,969,280	-				-1.9
1,969,280	-				-1.7
1,969,280	-				+1.4
1,969,316	+				-1.9
1,969,317	-				-0.2
1,969,317	-				-0.0
1,969,334	+				+0.1
1,969,334	+				+2.1
1,969,355	+				-2.0
1,969,355	+				-2.1
1,969,355	+				-1.3
1,969,356	-				-1.0
1,969,356	-				+4.2
1,969,660	+		PFLU_RS08885	0.31	+1.2
1,969,660	+		PFLU_RS08885	0.31	-1.2
1,969,660	+		PFLU_RS08885	0.31	-1.3
1,969,661	-		PFLU_RS08885	0.32	+0.1
1,969,661	-		PFLU_RS08885	0.32	-1.6
1,969,661	-		PFLU_RS08885	0.32	-1.9
1,970,047	+		PFLU_RS08885	0.74	-0.9
1,970,047	+		PFLU_RS08885	0.74	+0.2
1,970,047	+		PFLU_RS08885	0.74	+1.0
1,970,047	+		PFLU_RS08885	0.74	+2.6
1,970,047	+		PFLU_RS08885	0.74	+0.6
1,970,047	+		PFLU_RS08885	0.74	-2.9
1,970,047	+		PFLU_RS08885	0.74	+0.3
1,970,047	+		PFLU_RS08885	0.74	-0.9
1,970,047	+		PFLU_RS08885	0.74	+2.1
1,970,047	+		PFLU_RS08885	0.74	+1.5
1,970,047	+		PFLU_RS08885	0.74	+0.5
1,970,047	+		PFLU_RS08885	0.74	-2.5
1,970,047	+		PFLU_RS08885	0.74	+1.9
1,970,047	+		PFLU_RS08885	0.74	+3.5
1,970,047	+		PFLU_RS08885	0.74	-0.2
1,970,048	-		PFLU_RS08885	0.74	-0.5
1,970,048	-		PFLU_RS08885	0.74	+3.7
1,970,048	-		PFLU_RS08885	0.74	+1.1
1,970,048	-		PFLU_RS08885	0.74	+1.6
1,970,048	-		PFLU_RS08885	0.74	-0.5
1,970,048	-		PFLU_RS08885	0.74	-1.5
1,970,048	-		PFLU_RS08885	0.74	-1.0
1,970,048	-		PFLU_RS08885	0.74	-0.5
1,970,048	-		PFLU_RS08885	0.74	+0.5
1,970,048	-		PFLU_RS08885	0.74	-0.7
1,970,048	-		PFLU_RS08885	0.74	-1.4
1,970,048	-		PFLU_RS08885	0.74	+1.6
1,970,218	-				-1.9
1,970,218	-				+0.9