Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS00140

Experiment: Growth at pH9 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) Trisodium citrate
30,609	+		PFLU_RS00135	0.49	+0.5
30,609	+		PFLU_RS00135	0.49	-1.7
30,609	+		PFLU_RS00135	0.49	+0.5
30,609	+		PFLU_RS00135	0.49	+0.4
30,609	+		PFLU_RS00135	0.49	+2.8
30,609	+		PFLU_RS00135	0.49	+0.7
30,609	+		PFLU_RS00135	0.49	+1.7
30,609	+		PFLU_RS00135	0.49	-0.2
30,609	+		PFLU_RS00135	0.49	+0.5
30,609	+		PFLU_RS00135	0.49	-1.4
30,609	+		PFLU_RS00135	0.49	-2.1
30,609	+		PFLU_RS00135	0.49	+0.8
30,610	-		PFLU_RS00135	0.49	-2.6
30,610	-		PFLU_RS00135	0.49	+0.7
30,610	-		PFLU_RS00135	0.49	+0.0
30,610	-		PFLU_RS00135	0.49	+0.8
30,610	-		PFLU_RS00135	0.49	-1.8
30,610	-		PFLU_RS00135	0.49	-1.1
30,610	-		PFLU_RS00135	0.49	+1.8
30,610	-		PFLU_RS00135	0.49	-0.9
30,628	-		PFLU_RS00135	0.50	-0.6
30,628	-		PFLU_RS00135	0.50	-1.8
30,628	-		PFLU_RS00135	0.50	-1.5
30,652	+		PFLU_RS00135	0.51	+1.6
30,652	+		PFLU_RS00135	0.51	-1.5
30,652	+		PFLU_RS00135	0.51	+1.5
30,652	+		PFLU_RS00135	0.51	+0.2
30,653	-		PFLU_RS00135	0.51	+2.1
30,684	+		PFLU_RS00135	0.54	+2.0
30,684	+		PFLU_RS00135	0.54	+1.1
30,685	-		PFLU_RS00135	0.54	-1.9
30,685	-		PFLU_RS00135	0.54	-0.3
30,739	+		PFLU_RS00135	0.57	+1.8
30,739	+		PFLU_RS00135	0.57	-0.9
30,739	+		PFLU_RS00135	0.57	+0.3
30,739	+		PFLU_RS00135	0.57	-0.9
30,740	-		PFLU_RS00135	0.57	+1.0
30,740	-		PFLU_RS00135	0.57	+1.7
30,740	-		PFLU_RS00135	0.57	+1.2
30,740	-		PFLU_RS00135	0.57	+3.6
30,740	-		PFLU_RS00135	0.57	+0.1
30,765	+		PFLU_RS00135	0.59	+2.2
30,765	+		PFLU_RS00135	0.59	+1.5
30,765	+		PFLU_RS00135	0.59	-2.5
30,765	+		PFLU_RS00135	0.59	-2.2
30,765	+		PFLU_RS00135	0.59	-0.5
30,766	-		PFLU_RS00135	0.59	+2.0
30,766	-		PFLU_RS00135	0.59	+2.0
30,795	+		PFLU_RS00135	0.61	+0.2
30,795	+		PFLU_RS00135	0.61	+1.4
30,873	+		PFLU_RS00135	0.66	+0.6
30,873	+		PFLU_RS00135	0.66	-0.2
30,873	+		PFLU_RS00135	0.66	+2.1
30,873	+		PFLU_RS00135	0.66	+2.5
30,873	+		PFLU_RS00135	0.66	-1.6
30,873	+		PFLU_RS00135	0.66	-0.5
30,873	+		PFLU_RS00135	0.66	+2.3
30,874	-		PFLU_RS00135	0.66	-1.0
30,874	-		PFLU_RS00135	0.66	+0.4
30,874	-		PFLU_RS00135	0.66	+1.5
30,874	-		PFLU_RS00135	0.66	+1.8
30,874	-		PFLU_RS00135	0.66	-0.0
30,874	-		PFLU_RS00135	0.66	+3.3
30,966	+		PFLU_RS00135	0.72	-0.6
30,967	-		PFLU_RS00135	0.72	+3.3
30,967	-		PFLU_RS00135	0.72	+1.2
31,015	-		PFLU_RS00135	0.75	-0.7
31,026	+		PFLU_RS00135	0.76	+0.4
31,026	+		PFLU_RS00135	0.76	+1.1
31,026	+		PFLU_RS00135	0.76	+2.0
31,026	+		PFLU_RS00135	0.76	-1.9
31,026	+		PFLU_RS00135	0.76	+1.0
31,026	+		PFLU_RS00135	0.76	-1.7
31,026	+		PFLU_RS00135	0.76	-0.2
31,026	+		PFLU_RS00135	0.76	-2.6
31,026	+		PFLU_RS00135	0.76	-0.2
31,027	-		PFLU_RS00135	0.76	-0.0
31,027	-		PFLU_RS00135	0.76	-1.9
31,027	-		PFLU_RS00135	0.76	-0.3
31,027	-		PFLU_RS00135	0.76	-2.0
31,027	-		PFLU_RS00135	0.76	+1.5
31,053	+		PFLU_RS00135	0.78	-1.1
31,053	+		PFLU_RS00135	0.78	+1.1
31,053	+		PFLU_RS00135	0.78	+1.1
31,128	+		PFLU_RS00135	0.83	-1.2
31,128	+		PFLU_RS00135	0.83	+0.2
31,128	+		PFLU_RS00135	0.83	+0.0
31,129	-		PFLU_RS00135	0.83	-0.9
31,129	-		PFLU_RS00135	0.83	+0.5
31,129	-		PFLU_RS00135	0.83	+3.5
31,129	-		PFLU_RS00135	0.83	-2.0
31,137	+		PFLU_RS00135	0.83	+0.2
31,138	-		PFLU_RS00135	0.83	-0.3
31,138	-		PFLU_RS00135	0.83	-0.7
31,138	-		PFLU_RS00135	0.83	-0.3
31,138	-		PFLU_RS00135	0.83	-1.2
31,176	+		PFLU_RS00135	0.86	+1.8
31,216	+		PFLU_RS00135	0.89	+0.2
31,251	+				-0.8
31,252	-				+2.4
31,323	+				+0.5
31,323	+				-1.7
31,324	-				-1.1
31,324	-				-1.6
31,324	-				+0.9
31,324	-				-0.8
31,324	-				+1.3
31,474	+				+1.6
31,474	+				-0.3
31,490	+				-3.4
31,490	+				+2.6
31,491	-				+0.8
31,495	-				+1.5
31,566	-				+1.1
31,665	+		PFLU_RS00140	0.18	+0.6
31,665	+		PFLU_RS00140	0.18	-1.7
31,815	+		PFLU_RS00140	0.34	+1.5
32,044	+		PFLU_RS00140	0.58	+0.6
32,091	-		PFLU_RS00140	0.63	+2.0
32,178	+		PFLU_RS00140	0.72	+0.3
32,178	+		PFLU_RS00140	0.72	+1.4
32,178	+		PFLU_RS00140	0.72	+3.1
32,178	+		PFLU_RS00140	0.72	+1.2
32,178	+		PFLU_RS00140	0.72	-0.2
32,178	+		PFLU_RS00140	0.72	-1.6
32,178	+		PFLU_RS00140	0.72	+2.4
32,178	+		PFLU_RS00140	0.72	+2.8
32,178	+		PFLU_RS00140	0.72	+1.1
32,178	+		PFLU_RS00140	0.72	+0.4
32,178	+		PFLU_RS00140	0.72	-1.5
32,178	+		PFLU_RS00140	0.72	+0.2
32,178	+		PFLU_RS00140	0.72	-3.4
32,178	+		PFLU_RS00140	0.72	+0.2
32,178	+		PFLU_RS00140	0.72	+0.1
32,178	+		PFLU_RS00140	0.72	-0.8
32,178	+		PFLU_RS00140	0.72	-1.3
32,178	+		PFLU_RS00140	0.72	-0.0
32,178	+		PFLU_RS00140	0.72	+0.5
32,178	+		PFLU_RS00140	0.72	+1.9
32,178	+		PFLU_RS00140	0.72	-0.6
32,178	+		PFLU_RS00140	0.72	-2.1
32,179	-		PFLU_RS00140	0.72	-1.1
32,179	-		PFLU_RS00140	0.72	+0.7
32,179	-		PFLU_RS00140	0.72	-1.5
32,179	-		PFLU_RS00140	0.72	+1.9
32,179	-		PFLU_RS00140	0.72	-0.3
32,179	-		PFLU_RS00140	0.72	+5.0
32,179	-		PFLU_RS00140	0.72	+0.5
32,179	-		PFLU_RS00140	0.72	-1.2
32,179	-		PFLU_RS00140	0.72	+2.1
32,179	-		PFLU_RS00140	0.72	-0.6
32,179	-		PFLU_RS00140	0.72	-0.6
32,179	-		PFLU_RS00140	0.72	+0.5
32,179	-		PFLU_RS00140	0.72	+1.5
32,179	-		PFLU_RS00140	0.72	-0.2
32,179	-		PFLU_RS00140	0.72	+3.2
32,179	-		PFLU_RS00140	0.72	-1.8
32,179	-		PFLU_RS00140	0.72	+1.8
32,254	+		PFLU_RS00140	0.80	-1.9
32,255	-		PFLU_RS00140	0.80	+2.1
32,255	-		PFLU_RS00140	0.80	+0.1
32,269	+		PFLU_RS00140	0.82	-1.6
32,270	-		PFLU_RS00140	0.82	+0.2
32,310	+		PFLU_RS00140	0.86	+1.5
32,310	+		PFLU_RS00140	0.86	-1.5
32,313	+		PFLU_RS00140	0.86	+0.0
32,313	+		PFLU_RS00140	0.86	+2.6
32,313	+		PFLU_RS00140	0.86	+1.2
32,313	+		PFLU_RS00140	0.86	-0.2
32,313	+		PFLU_RS00140	0.86	-2.3
32,313	+		PFLU_RS00140	0.86	-2.9
32,313	+		PFLU_RS00140	0.86	+1.8
32,313	+		PFLU_RS00140	0.86	-0.2
32,313	+		PFLU_RS00140	0.86	-2.5
32,313	+		PFLU_RS00140	0.86	-0.9
32,313	+		PFLU_RS00140	0.86	+3.2
32,314	-		PFLU_RS00140	0.87	+0.7
32,314	-		PFLU_RS00140	0.87	-2.5
32,314	-		PFLU_RS00140	0.87	+0.0
32,314	-		PFLU_RS00140	0.87	-0.2
32,314	-		PFLU_RS00140	0.87	-1.8
32,314	-		PFLU_RS00140	0.87	+2.2
32,314	-		PFLU_RS00140	0.87	+1.1
32,314	-		PFLU_RS00140	0.87	-0.9
32,314	-		PFLU_RS00140	0.87	+0.1
32,314	-		PFLU_RS00140	0.87	+1.8
32,314	-		PFLU_RS00140	0.87	+3.0
32,314	-		PFLU_RS00140	0.87	-1.6
32,314	-		PFLU_RS00140	0.87	-0.2
32,439	+				-1.6
32,439	+				-1.1
32,439	+				-0.6
32,439	+				+0.2
32,440	+				+1.8
32,440	-				+3.7
32,440	-				-1.0
32,440	-				-0.6
32,440	-				-0.6
32,440	-				-1.3
32,453	+				-0.6
32,453	+				+1.5
32,454	-				-0.9
32,481	+				-1.3
32,481	+				+0.8
32,481	+				-2.1
32,481	+				+1.3
32,481	+				-1.7
32,481	+				+0.5
32,481	+				+3.3
32,481	+				-2.9
32,481	+				-2.0
32,481	+				-0.6
32,481	+				-2.3
32,481	+				-1.1
32,481	+				+0.0
32,481	+				-2.7
32,481	+				+1.7
32,481	+				+0.0
32,481	+				-1.0
32,481	+				+2.0
32,481	+				-1.6
32,481	+				+1.8
32,481	+				+0.1
32,482	-				+0.0
32,482	-				-1.9
32,482	-				+0.4
32,482	-				+3.2
32,482	-				-1.5
32,482	-				-2.3
32,482	-				-1.9
32,482	-				-1.1
32,482	-				-0.8
32,482	-				+0.8
32,482	-				+0.3
32,482	-				+0.8
32,482	-				-1.6
32,482	-				-1.7
32,482	-				+1.2
32,482	-				+0.2
32,482	-				+1.5
32,482	-				-1.2
32,482	-				-0.5
32,482	-				-1.7
32,482	-				+0.5
32,491	+				-2.0
32,492	-				-1.8
32,492	-				+2.3
32,492	-				-0.2
32,502	+				-2.3
32,503	-				-1.1
32,503	-				-0.3
32,503	-				+2.4
32,506	+		PFLU_RS00145	0.10	+2.4
32,506	+		PFLU_RS00145	0.10	+0.8
32,506	+		PFLU_RS00145	0.10	+2.2
32,506	+		PFLU_RS00145	0.10	-1.2
32,506	+		PFLU_RS00145	0.10	-2.1
32,506	+		PFLU_RS00145	0.10	+0.2
32,506	+		PFLU_RS00145	0.10	-2.0
32,506	+		PFLU_RS00145	0.10	-0.8
32,506	+		PFLU_RS00145	0.10	+0.5
32,506	+		PFLU_RS00145	0.10	+0.4
32,507	-		PFLU_RS00145	0.10	+0.2
32,507	-		PFLU_RS00145	0.10	+2.0
32,507	-		PFLU_RS00145	0.10	+1.4
32,507	-		PFLU_RS00145	0.10	-0.2
32,507	-		PFLU_RS00145	0.10	-1.6
32,507	-		PFLU_RS00145	0.10	-0.6
32,507	-		PFLU_RS00145	0.10	+0.5
32,507	-		PFLU_RS00145	0.10	+0.5
32,507	-		PFLU_RS00145	0.10	-1.7
32,650	+		PFLU_RS00145	0.54	-2.6
32,650	+		PFLU_RS00145	0.54	+1.6
32,650	+		PFLU_RS00145	0.54	-1.7
32,650	+		PFLU_RS00145	0.54	-1.3
32,650	+		PFLU_RS00145	0.54	+1.1
32,650	+		PFLU_RS00145	0.54	+1.2
32,651	-		PFLU_RS00145	0.54	-1.8
32,651	-		PFLU_RS00145	0.54	-0.6
32,749	+		PFLU_RS00145	0.84	-3.2
32,749	+		PFLU_RS00145	0.84	-2.6
32,749	+		PFLU_RS00145	0.84	+1.8
32,749	+		PFLU_RS00145	0.84	+0.4
32,749	+		PFLU_RS00145	0.84	+2.3
32,749	+		PFLU_RS00145	0.84	-0.6
32,749	+		PFLU_RS00145	0.84	+2.1
32,750	-		PFLU_RS00145	0.84	+0.3
32,750	-		PFLU_RS00145	0.84	-0.3
32,750	-		PFLU_RS00145	0.84	-1.7
32,750	-		PFLU_RS00145	0.84	-1.6
32,750	-		PFLU_RS00145	0.84	+1.1
32,750	-		PFLU_RS00145	0.84	+3.5
32,750	-		PFLU_RS00145	0.84	-1.6
32,806	-				+1.4
32,813	+				+2.5
32,828	+				+3.5
32,828	+				+0.9
32,832	+				-1.2
32,832	+				+1.8
32,832	+				+0.0
32,832	+				+0.4
32,833	-				-2.2
32,834	+				+2.1
32,834	+				+1.5
32,835	-				+1.5
32,835	-				+2.3
32,835	-				-0.6
32,836	+				-0.5
32,836	+				+0.1
32,837	-				+3.8
32,837	-				+0.2
32,837	-				-1.0
32,856	+				-2.7
32,856	+				-1.3
32,856	+				-0.6
32,856	+				+1.2
32,856	+				-2.0
32,857	-				+0.4
32,857	-				+4.2
32,857	-				+4.1
32,857	-				+0.5
32,857	-				+2.7
32,857	-				-1.9
32,857	-				-0.4
32,857	-				-1.8
32,857	-				+0.3
32,857	-				-1.4
32,862	+				-1.1
32,862	+				-0.9
32,862	+				+1.4
32,863	-				+0.5
32,864	+				-0.5
32,864	+				+1.3
32,864	+				-0.8
32,864	+				-0.8
32,864	+				-1.8
32,864	+				-0.2
32,864	+				+3.9
32,864	+				-0.0
32,865	-				+2.4
32,865	-				-1.9
32,865	-				-0.1
32,865	-				+0.5
32,950	+				+0.5
32,951	-				-1.0
32,951	-				-2.1
32,951	-				+0.5
32,951	-				+3.5
32,951	-				-1.3
32,952	+				+1.3
32,952	+				+1.1
32,952	+				+2.2
32,952	+				+0.7
33,033	+		PFLU_RS00150	0.14	-0.4
33,172	+		PFLU_RS00150	0.28	-0.9
33,252	+		PFLU_RS00150	0.37	-0.0
33,252	+		PFLU_RS00150	0.37	-0.5
33,252	+		PFLU_RS00150	0.37	-1.4
33,253	-		PFLU_RS00150	0.37	-1.3
33,253	-		PFLU_RS00150	0.37	+1.2
33,253	-		PFLU_RS00150	0.37	+1.7
33,317	+		PFLU_RS00150	0.44	-1.1
33,317	+		PFLU_RS00150	0.44	-1.4
33,317	+		PFLU_RS00150	0.44	-0.6
33,318	-		PFLU_RS00150	0.44	-1.6
33,318	-		PFLU_RS00150	0.44	+0.4
33,318	-		PFLU_RS00150	0.44	-2.2
33,318	-		PFLU_RS00150	0.44	-1.5
33,318	-		PFLU_RS00150	0.44	+0.0
33,318	-		PFLU_RS00150	0.44	+1.1
33,318	-		PFLU_RS00150	0.44	+2.6
33,318	-		PFLU_RS00150	0.44	-1.3
33,320	+		PFLU_RS00150	0.44	+0.5
33,320	+		PFLU_RS00150	0.44	-0.2
33,321	-		PFLU_RS00150	0.44	-1.6
33,321	-		PFLU_RS00150	0.44	+1.6
33,321	-		PFLU_RS00150	0.44	+1.8