Experiment: H2 N-free with 2g/L casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04275 and MMJJ_RS04280 overlap by 1 nucleotides MMJJ_RS04280 and MMJJ_RS04285 are separated by 64 nucleotides MMJJ_RS04285 and MMJJ_RS04290 are separated by 180 nucleotides MMJJ_RS04290 and MMJJ_RS04295 are separated by 197 nucleotides
MMJJ_RS04275: MMJJ_RS04275 - ABC transporter ATP-binding protein, at 796,020 to 796,802
_RS04275
MMJJ_RS04280: MMJJ_RS04280 - iron ABC transporter permease, at 796,802 to 797,680
_RS04280
MMJJ_RS04285: MMJJ_RS04285 - ABC transporter substrate-binding protein, at 797,745 to 798,806
_RS04285
MMJJ_RS04290: MMJJ_RS04290 - hypothetical protein, at 798,987 to 799,301
_RS04290
MMJJ_RS04295: MMJJ_RS04295 - DUF2202 domain-containing protein, at 799,499 to 800,317
_RS04295
Position (kb) 797
798
799 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 796.775 kb on - strand at 796.776 kb on + strand at 796.783 kb on + strand at 796.785 kb on + strand at 796.803 kb on - strand at 796.804 kb on + strand at 796.829 kb on + strand at 796.829 kb on + strand at 796.863 kb on + strand at 796.863 kb on + strand at 796.867 kb on - strand at 796.868 kb on + strand at 797.006 kb on - strand, within MMJJ_RS04280 at 797.007 kb on + strand, within MMJJ_RS04280 at 797.007 kb on + strand, within MMJJ_RS04280 at 797.007 kb on + strand, within MMJJ_RS04280 at 797.007 kb on + strand, within MMJJ_RS04280 at 797.007 kb on + strand, within MMJJ_RS04280 at 797.060 kb on - strand, within MMJJ_RS04280 at 797.061 kb on + strand, within MMJJ_RS04280 at 797.061 kb on + strand, within MMJJ_RS04280 at 797.061 kb on + strand, within MMJJ_RS04280 at 797.084 kb on + strand, within MMJJ_RS04280 at 797.168 kb on - strand, within MMJJ_RS04280 at 797.169 kb on + strand, within MMJJ_RS04280 at 797.194 kb on - strand, within MMJJ_RS04280 at 797.194 kb on - strand, within MMJJ_RS04280 at 797.194 kb on - strand, within MMJJ_RS04280 at 797.194 kb on - strand, within MMJJ_RS04280 at 797.194 kb on - strand, within MMJJ_RS04280 at 797.195 kb on + strand, within MMJJ_RS04280 at 797.195 kb on + strand, within MMJJ_RS04280 at 797.195 kb on + strand, within MMJJ_RS04280 at 797.195 kb on + strand, within MMJJ_RS04280 at 797.195 kb on + strand, within MMJJ_RS04280 at 797.198 kb on - strand, within MMJJ_RS04280 at 797.198 kb on - strand, within MMJJ_RS04280 at 797.198 kb on - strand, within MMJJ_RS04280 at 797.199 kb on + strand, within MMJJ_RS04280 at 797.199 kb on + strand, within MMJJ_RS04280 at 797.199 kb on + strand, within MMJJ_RS04280 at 797.200 kb on - strand, within MMJJ_RS04280 at 797.301 kb on + strand, within MMJJ_RS04280 at 797.404 kb on + strand, within MMJJ_RS04280 at 797.405 kb on - strand, within MMJJ_RS04280 at 797.405 kb on - strand, within MMJJ_RS04280 at 797.479 kb on - strand, within MMJJ_RS04280 at 797.479 kb on - strand, within MMJJ_RS04280 at 797.480 kb on + strand, within MMJJ_RS04280 at 797.480 kb on + strand, within MMJJ_RS04280 at 797.507 kb on + strand, within MMJJ_RS04280 at 797.507 kb on + strand, within MMJJ_RS04280 at 797.518 kb on - strand, within MMJJ_RS04280 at 797.682 kb on - strand at 797.682 kb on - strand at 797.683 kb on + strand at 797.683 kb on + strand at 797.754 kb on + strand at 797.783 kb on - strand at 797.784 kb on + strand at 797.787 kb on - strand at 797.787 kb on - strand at 797.787 kb on - strand at 797.787 kb on - strand at 797.788 kb on + strand at 797.788 kb on + strand at 797.788 kb on + strand at 797.807 kb on + strand at 797.819 kb on - strand at 797.819 kb on - strand at 797.820 kb on + strand at 797.826 kb on - strand at 797.827 kb on + strand at 797.843 kb on - strand at 797.844 kb on + strand at 797.845 kb on - strand at 797.845 kb on - strand at 797.845 kb on - strand at 797.845 kb on - strand at 797.845 kb on - strand at 797.845 kb on - strand at 797.845 kb on - strand at 797.845 kb on - strand at 797.845 kb on - strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.846 kb on + strand at 797.849 kb on - strand at 797.850 kb on + strand at 797.881 kb on + strand, within MMJJ_RS04285 at 797.881 kb on + strand, within MMJJ_RS04285 at 797.991 kb on - strand, within MMJJ_RS04285 at 797.991 kb on - strand, within MMJJ_RS04285 at 797.991 kb on - strand, within MMJJ_RS04285 at 797.994 kb on - strand, within MMJJ_RS04285 at 797.994 kb on - strand, within MMJJ_RS04285 at 797.996 kb on - strand, within MMJJ_RS04285 at 797.996 kb on - strand, within MMJJ_RS04285 at 797.997 kb on + strand, within MMJJ_RS04285 at 798.006 kb on - strand, within MMJJ_RS04285 at 798.011 kb on - strand, within MMJJ_RS04285 at 798.044 kb on - strand, within MMJJ_RS04285 at 798.048 kb on - strand, within MMJJ_RS04285 at 798.109 kb on + strand, within MMJJ_RS04285 at 798.143 kb on - strand at 798.144 kb on + strand, within MMJJ_RS04285 at 798.144 kb on + strand, within MMJJ_RS04285 at 798.144 kb on + strand, within MMJJ_RS04285 at 798.217 kb on + strand, within MMJJ_RS04285 at 798.286 kb on - strand, within MMJJ_RS04285 at 798.287 kb on + strand, within MMJJ_RS04285 at 798.310 kb on - strand, within MMJJ_RS04285 at 798.328 kb on + strand, within MMJJ_RS04285 at 798.328 kb on + strand, within MMJJ_RS04285 at 798.354 kb on + strand, within MMJJ_RS04285 at 798.358 kb on - strand, within MMJJ_RS04285 at 798.359 kb on + strand, within MMJJ_RS04285 at 798.359 kb on + strand, within MMJJ_RS04285 at 798.359 kb on + strand, within MMJJ_RS04285 at 798.362 kb on - strand, within MMJJ_RS04285 at 798.362 kb on - strand, within MMJJ_RS04285 at 798.363 kb on + strand, within MMJJ_RS04285 at 798.363 kb on + strand, within MMJJ_RS04285 at 798.363 kb on + strand, within MMJJ_RS04285 at 798.383 kb on - strand, within MMJJ_RS04285 at 798.479 kb on - strand, within MMJJ_RS04285 at 798.503 kb on - strand, within MMJJ_RS04285 at 798.503 kb on - strand, within MMJJ_RS04285 at 798.504 kb on + strand, within MMJJ_RS04285 at 798.638 kb on - strand, within MMJJ_RS04285 at 798.645 kb on - strand, within MMJJ_RS04285 at 798.645 kb on - strand, within MMJJ_RS04285 at 798.645 kb on - strand, within MMJJ_RS04285 at 798.645 kb on - strand, within MMJJ_RS04285 at 798.646 kb on + strand, within MMJJ_RS04285 at 798.646 kb on + strand, within MMJJ_RS04285 at 798.665 kb on - strand, within MMJJ_RS04285 at 798.671 kb on - strand, within MMJJ_RS04285 at 798.671 kb on - strand, within MMJJ_RS04285 at 798.738 kb on + strand at 798.786 kb on - strand at 798.810 kb on - strand at 798.831 kb on - strand at 798.906 kb on - strand at 798.906 kb on - strand at 798.906 kb on - strand at 798.906 kb on - strand at 798.906 kb on - strand at 798.906 kb on - strand at 798.906 kb on - strand at 798.906 kb on - strand at 798.906 kb on - strand at 798.906 kb on - strand at 798.907 kb on + strand at 798.907 kb on + strand at 798.907 kb on + strand at 798.907 kb on + strand at 798.907 kb on + strand at 798.907 kb on + strand at 798.907 kb on + strand at 798.907 kb on + strand at 798.913 kb on - strand at 798.917 kb on - strand at 798.917 kb on - strand at 798.957 kb on + strand at 798.991 kb on - strand at 799.008 kb on - strand at 799.026 kb on + strand, within MMJJ_RS04290 at 799.047 kb on + strand, within MMJJ_RS04290 at 799.068 kb on - strand, within MMJJ_RS04290 at 799.069 kb on + strand, within MMJJ_RS04290 at 799.121 kb on - strand, within MMJJ_RS04290 at 799.122 kb on + strand, within MMJJ_RS04290 at 799.133 kb on - strand, within MMJJ_RS04290 at 799.133 kb on - strand, within MMJJ_RS04290 at 799.135 kb on - strand, within MMJJ_RS04290 at 799.135 kb on - strand, within MMJJ_RS04290 at 799.177 kb on + strand, within MMJJ_RS04290 at 799.199 kb on - strand, within MMJJ_RS04290 at 799.199 kb on - strand, within MMJJ_RS04290 at 799.200 kb on + strand, within MMJJ_RS04290 at 799.221 kb on - strand, within MMJJ_RS04290 at 799.222 kb on + strand, within MMJJ_RS04290 at 799.222 kb on + strand, within MMJJ_RS04290 at 799.227 kb on + strand, within MMJJ_RS04290 at 799.227 kb on + strand, within MMJJ_RS04290 at 799.273 kb on + strand at 799.283 kb on - strand at 799.283 kb on - strand at 799.283 kb on - strand at 799.303 kb on - strand at 799.303 kb on - strand at 799.304 kb on + strand at 799.304 kb on + strand at 799.304 kb on + strand at 799.319 kb on + strand at 799.319 kb on + strand at 799.341 kb on + strand at 799.341 kb on + strand at 799.383 kb on - strand at 799.392 kb on + strand at 799.392 kb on + strand at 799.449 kb on - strand at 799.449 kb on - strand at 799.449 kb on - strand at 799.450 kb on + strand at 799.450 kb on + strand at 799.465 kb on + strand at 799.481 kb on + strand at 799.484 kb on + strand at 799.497 kb on + strand at 799.585 kb on - strand, within MMJJ_RS04295 at 799.652 kb on - strand, within MMJJ_RS04295 at 799.662 kb on - strand, within MMJJ_RS04295 at 799.663 kb on + strand, within MMJJ_RS04295 at 799.663 kb on + strand, within MMJJ_RS04295 at 799.734 kb on + strand, within MMJJ_RS04295 at 799.765 kb on - strand, within MMJJ_RS04295 at 799.766 kb on + strand, within MMJJ_RS04295 at 799.766 kb on + strand, within MMJJ_RS04295 at 799.769 kb on - strand, within MMJJ_RS04295
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 2g/L casaminos remove 796,775 - +0.0 796,776 + +0.4 796,783 + -0.3 796,785 + -0.6 796,803 - -0.4 796,804 + -0.6 796,829 + +0.4 796,829 + +0.8 796,863 + -0.2 796,863 + +0.1 796,867 - +0.8 796,868 + -0.9 797,006 - MMJJ_RS04280 0.23 +0.5 797,007 + MMJJ_RS04280 0.23 +0.1 797,007 + MMJJ_RS04280 0.23 +0.5 797,007 + MMJJ_RS04280 0.23 +0.6 797,007 + MMJJ_RS04280 0.23 -0.8 797,007 + MMJJ_RS04280 0.23 +0.9 797,060 - MMJJ_RS04280 0.29 -0.5 797,061 + MMJJ_RS04280 0.29 +0.5 797,061 + MMJJ_RS04280 0.29 -0.6 797,061 + MMJJ_RS04280 0.29 +0.4 797,084 + MMJJ_RS04280 0.32 +0.8 797,168 - MMJJ_RS04280 0.42 +0.3 797,169 + MMJJ_RS04280 0.42 +0.2 797,194 - MMJJ_RS04280 0.45 -0.4 797,194 - MMJJ_RS04280 0.45 -0.1 797,194 - MMJJ_RS04280 0.45 -0.7 797,194 - MMJJ_RS04280 0.45 -1.4 797,194 - MMJJ_RS04280 0.45 -0.4 797,195 + MMJJ_RS04280 0.45 -0.6 797,195 + MMJJ_RS04280 0.45 +0.7 797,195 + MMJJ_RS04280 0.45 +0.5 797,195 + MMJJ_RS04280 0.45 +0.3 797,195 + MMJJ_RS04280 0.45 +0.4 797,198 - MMJJ_RS04280 0.45 +0.1 797,198 - MMJJ_RS04280 0.45 +0.6 797,198 - MMJJ_RS04280 0.45 -0.0 797,199 + MMJJ_RS04280 0.45 +0.9 797,199 + MMJJ_RS04280 0.45 -0.1 797,199 + MMJJ_RS04280 0.45 +0.4 797,200 - MMJJ_RS04280 0.45 -2.4 797,301 + MMJJ_RS04280 0.57 +0.9 797,404 + MMJJ_RS04280 0.68 -0.6 797,405 - MMJJ_RS04280 0.69 +1.6 797,405 - MMJJ_RS04280 0.69 -0.4 797,479 - MMJJ_RS04280 0.77 -0.9 797,479 - MMJJ_RS04280 0.77 -0.4 797,480 + MMJJ_RS04280 0.77 +0.8 797,480 + MMJJ_RS04280 0.77 -0.1 797,507 + MMJJ_RS04280 0.80 +0.2 797,507 + MMJJ_RS04280 0.80 +0.0 797,518 - MMJJ_RS04280 0.81 -0.2 797,682 - +0.1 797,682 - +2.2 797,683 + +0.3 797,683 + +0.3 797,754 + -0.2 797,783 - -0.0 797,784 + -1.3 797,787 - -0.8 797,787 - -0.8 797,787 - +1.1 797,787 - -0.2 797,788 + +0.0 797,788 + +0.5 797,788 + -1.0 797,807 + +1.0 797,819 - -2.3 797,819 - +0.9 797,820 + +0.6 797,826 - +0.2 797,827 + -0.5 797,843 - -0.2 797,844 + -0.0 797,845 - +1.5 797,845 - -0.3 797,845 - +0.5 797,845 - -0.6 797,845 - +0.0 797,845 - -0.6 797,845 - -0.4 797,845 - -1.0 797,845 - +0.9 797,846 + -1.8 797,846 + -0.1 797,846 + -0.3 797,846 + -3.1 797,846 + +0.8 797,846 + +0.1 797,846 + +0.3 797,846 + +0.4 797,846 + +0.3 797,846 + +0.3 797,846 + +1.3 797,846 + -0.3 797,846 + +0.5 797,846 + -0.6 797,846 + +0.6 797,846 + -0.1 797,846 + +0.2 797,846 + +0.1 797,846 + -0.9 797,846 + +1.2 797,846 + -1.8 797,849 - +0.2 797,850 + -0.1 797,881 + MMJJ_RS04285 0.13 +0.2 797,881 + MMJJ_RS04285 0.13 -0.4 797,991 - MMJJ_RS04285 0.23 +0.9 797,991 - MMJJ_RS04285 0.23 +0.3 797,991 - MMJJ_RS04285 0.23 +0.8 797,994 - MMJJ_RS04285 0.23 +0.9 797,994 - MMJJ_RS04285 0.23 +1.1 797,996 - MMJJ_RS04285 0.24 -0.7 797,996 - MMJJ_RS04285 0.24 +0.7 797,997 + MMJJ_RS04285 0.24 -0.4 798,006 - MMJJ_RS04285 0.25 +0.2 798,011 - MMJJ_RS04285 0.25 -0.9 798,044 - MMJJ_RS04285 0.28 -0.1 798,048 - MMJJ_RS04285 0.29 -0.2 798,109 + MMJJ_RS04285 0.34 +0.8 798,143 - -1.0 798,144 + MMJJ_RS04285 0.38 +0.3 798,144 + MMJJ_RS04285 0.38 -0.7 798,144 + MMJJ_RS04285 0.38 +0.7 798,217 + MMJJ_RS04285 0.44 +0.8 798,286 - MMJJ_RS04285 0.51 +0.7 798,287 + MMJJ_RS04285 0.51 +0.7 798,310 - MMJJ_RS04285 0.53 -0.5 798,328 + MMJJ_RS04285 0.55 -0.3 798,328 + MMJJ_RS04285 0.55 +0.2 798,354 + MMJJ_RS04285 0.57 +1.3 798,358 - MMJJ_RS04285 0.58 +0.8 798,359 + MMJJ_RS04285 0.58 -0.3 798,359 + MMJJ_RS04285 0.58 -0.1 798,359 + MMJJ_RS04285 0.58 +1.2 798,362 - MMJJ_RS04285 0.58 +1.3 798,362 - MMJJ_RS04285 0.58 +0.0 798,363 + MMJJ_RS04285 0.58 +0.3 798,363 + MMJJ_RS04285 0.58 -0.6 798,363 + MMJJ_RS04285 0.58 +0.2 798,383 - MMJJ_RS04285 0.60 -1.0 798,479 - MMJJ_RS04285 0.69 +1.2 798,503 - MMJJ_RS04285 0.71 +0.0 798,503 - MMJJ_RS04285 0.71 +0.6 798,504 + MMJJ_RS04285 0.71 -0.7 798,638 - MMJJ_RS04285 0.84 +0.6 798,645 - MMJJ_RS04285 0.85 -0.2 798,645 - MMJJ_RS04285 0.85 -0.7 798,645 - MMJJ_RS04285 0.85 +2.0 798,645 - MMJJ_RS04285 0.85 +0.7 798,646 + MMJJ_RS04285 0.85 +0.5 798,646 + MMJJ_RS04285 0.85 +0.1 798,665 - MMJJ_RS04285 0.87 -1.4 798,671 - MMJJ_RS04285 0.87 -0.1 798,671 - MMJJ_RS04285 0.87 +0.7 798,738 + +0.0 798,786 - +0.8 798,810 - -0.4 798,831 - -0.0 798,906 - +1.1 798,906 - +0.8 798,906 - +0.4 798,906 - -0.3 798,906 - +0.2 798,906 - +0.1 798,906 - -2.7 798,906 - +0.9 798,906 - +0.5 798,906 - -0.4 798,907 + -0.3 798,907 + -2.0 798,907 + +0.8 798,907 + +0.2 798,907 + +1.6 798,907 + -0.2 798,907 + -1.2 798,907 + -0.8 798,913 - -0.5 798,917 - -1.7 798,917 - +0.6 798,957 + +0.0 798,991 - +0.2 799,008 - +0.3 799,026 + MMJJ_RS04290 0.12 -0.2 799,047 + MMJJ_RS04290 0.19 +0.1 799,068 - MMJJ_RS04290 0.26 +1.0 799,069 + MMJJ_RS04290 0.26 +0.6 799,121 - MMJJ_RS04290 0.43 -1.4 799,122 + MMJJ_RS04290 0.43 -0.6 799,133 - MMJJ_RS04290 0.46 +0.1 799,133 - MMJJ_RS04290 0.46 +0.6 799,135 - MMJJ_RS04290 0.47 +0.7 799,135 - MMJJ_RS04290 0.47 -0.5 799,177 + MMJJ_RS04290 0.60 +0.8 799,199 - MMJJ_RS04290 0.67 +0.1 799,199 - MMJJ_RS04290 0.67 -0.1 799,200 + MMJJ_RS04290 0.68 -0.3 799,221 - MMJJ_RS04290 0.74 -1.2 799,222 + MMJJ_RS04290 0.75 +0.0 799,222 + MMJJ_RS04290 0.75 +1.7 799,227 + MMJJ_RS04290 0.76 -0.4 799,227 + MMJJ_RS04290 0.76 +1.0 799,273 + +1.7 799,283 - -0.4 799,283 - -0.8 799,283 - -0.6 799,303 - +0.7 799,303 - +0.7 799,304 + -1.4 799,304 + -0.7 799,304 + -3.1 799,319 + +0.3 799,319 + +1.1 799,341 + +0.3 799,341 + -0.9 799,383 - -1.2 799,392 + -0.4 799,392 + +0.8 799,449 - +1.2 799,449 - +0.1 799,449 - -0.5 799,450 + -0.5 799,450 + +0.8 799,465 + -0.9 799,481 + +0.3 799,484 + +0.7 799,497 + +0.4 799,585 - MMJJ_RS04295 0.11 +0.6 799,652 - MMJJ_RS04295 0.19 -0.6 799,662 - MMJJ_RS04295 0.20 +0.7 799,663 + MMJJ_RS04295 0.20 +1.0 799,663 + MMJJ_RS04295 0.20 -0.9 799,734 + MMJJ_RS04295 0.29 -0.2 799,765 - MMJJ_RS04295 0.32 +2.2 799,766 + MMJJ_RS04295 0.33 -0.2 799,766 + MMJJ_RS04295 0.33 +0.6 799,769 - MMJJ_RS04295 0.33 -0.1
Or see this region's nucleotide sequence