Experiment: H2 N-free with 2g/L casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03860 and MMJJ_RS03865 are separated by 60 nucleotides MMJJ_RS03865 and MMJJ_RS03870 are separated by 20 nucleotides
MMJJ_RS03860: MMJJ_RS03860 - PINc/VapC family ATPase, at 718,358 to 720,250
_RS03860
MMJJ_RS03865: MMJJ_RS03865 - phosphoribosyl-AMP cyclohydrolase, at 720,311 to 720,700
_RS03865
MMJJ_RS03870: MMJJ_RS03870 - beta-ribofuranosylaminobenzene 5'-phosphate synthase, at 720,721 to 721,698
_RS03870
Position (kb) 720
721 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 719.390 kb on + strand, within MMJJ_RS03860 at 719.442 kb on + strand, within MMJJ_RS03860 at 719.447 kb on - strand, within MMJJ_RS03860 at 719.447 kb on - strand, within MMJJ_RS03860 at 719.466 kb on - strand, within MMJJ_RS03860 at 719.467 kb on + strand, within MMJJ_RS03860 at 719.514 kb on + strand, within MMJJ_RS03860 at 719.514 kb on + strand, within MMJJ_RS03860 at 719.719 kb on - strand, within MMJJ_RS03860 at 719.724 kb on - strand, within MMJJ_RS03860 at 719.796 kb on + strand, within MMJJ_RS03860 at 719.796 kb on + strand, within MMJJ_RS03860 at 719.833 kb on - strand, within MMJJ_RS03860 at 719.856 kb on - strand, within MMJJ_RS03860 at 719.857 kb on + strand, within MMJJ_RS03860 at 719.857 kb on + strand, within MMJJ_RS03860 at 719.876 kb on - strand, within MMJJ_RS03860 at 719.893 kb on - strand, within MMJJ_RS03860 at 719.924 kb on - strand, within MMJJ_RS03860 at 719.976 kb on - strand, within MMJJ_RS03860 at 719.976 kb on - strand, within MMJJ_RS03860 at 719.979 kb on - strand, within MMJJ_RS03860 at 719.979 kb on - strand, within MMJJ_RS03860 at 720.081 kb on + strand at 720.158 kb on + strand at 720.203 kb on + strand at 720.250 kb on - strand at 720.282 kb on + strand at 720.306 kb on + strand at 720.309 kb on - strand at 720.313 kb on + strand at 720.317 kb on - strand at 720.323 kb on + strand at 720.350 kb on + strand, within MMJJ_RS03865 at 720.382 kb on - strand, within MMJJ_RS03865 at 720.455 kb on - strand, within MMJJ_RS03865 at 720.748 kb on + strand at 720.902 kb on + strand, within MMJJ_RS03870 at 721.441 kb on - strand, within MMJJ_RS03870 at 721.668 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 2g/L casaminos remove 719,390 + MMJJ_RS03860 0.55 -1.2 719,442 + MMJJ_RS03860 0.57 +0.0 719,447 - MMJJ_RS03860 0.58 -1.9 719,447 - MMJJ_RS03860 0.58 +0.1 719,466 - MMJJ_RS03860 0.59 -0.9 719,467 + MMJJ_RS03860 0.59 -0.3 719,514 + MMJJ_RS03860 0.61 -1.8 719,514 + MMJJ_RS03860 0.61 -0.2 719,719 - MMJJ_RS03860 0.72 -0.3 719,724 - MMJJ_RS03860 0.72 -1.3 719,796 + MMJJ_RS03860 0.76 -3.1 719,796 + MMJJ_RS03860 0.76 -0.3 719,833 - MMJJ_RS03860 0.78 -1.1 719,856 - MMJJ_RS03860 0.79 +0.7 719,857 + MMJJ_RS03860 0.79 +1.0 719,857 + MMJJ_RS03860 0.79 +0.3 719,876 - MMJJ_RS03860 0.80 +0.8 719,893 - MMJJ_RS03860 0.81 +0.1 719,924 - MMJJ_RS03860 0.83 +0.8 719,976 - MMJJ_RS03860 0.85 -1.0 719,976 - MMJJ_RS03860 0.85 -0.1 719,979 - MMJJ_RS03860 0.86 -2.1 719,979 - MMJJ_RS03860 0.86 +0.6 720,081 + -1.1 720,158 + +0.5 720,203 + -1.0 720,250 - -1.2 720,282 + +0.4 720,306 + +0.2 720,309 - -0.8 720,313 + -0.9 720,317 - +0.0 720,323 + -1.6 720,350 + MMJJ_RS03865 0.10 -2.4 720,382 - MMJJ_RS03865 0.18 -1.3 720,455 - MMJJ_RS03865 0.37 +2.0 720,748 + -1.0 720,902 + MMJJ_RS03870 0.19 -1.8 721,441 - MMJJ_RS03870 0.74 -3.8 721,668 - -2.5
Or see this region's nucleotide sequence