Experiment: H2 N-free with 2g/L casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01220 and MMJJ_RS01225 are separated by 21 nucleotides MMJJ_RS01225 and MMJJ_RS01230 are separated by 9 nucleotides MMJJ_RS01230 and MMJJ_RS01235 are separated by 126 nucleotides
MMJJ_RS01220: MMJJ_RS01220 - exodeoxyribonuclease VII large subunit, at 234,241 to 235,464
_RS01220
MMJJ_RS01225: MMJJ_RS01225 - exodeoxyribonuclease VII small subunit, at 235,486 to 235,689
_RS01225
MMJJ_RS01230: MMJJ_RS01230 - EamA family transporter, at 235,699 to 236,118
_RS01230
MMJJ_RS01235: MMJJ_RS01235 - excinuclease ABC subunit UvrA, at 236,245 to 239,100
_RS01235
Position (kb) 235
236
237 Strain fitness (log2 ratio) -2
-1
0
1 at 234.723 kb on - strand, within MMJJ_RS01220 at 234.764 kb on - strand, within MMJJ_RS01220 at 234.765 kb on + strand, within MMJJ_RS01220 at 234.768 kb on - strand, within MMJJ_RS01220 at 234.769 kb on + strand, within MMJJ_RS01220 at 234.771 kb on + strand, within MMJJ_RS01220 at 234.923 kb on - strand, within MMJJ_RS01220 at 234.924 kb on + strand, within MMJJ_RS01220 at 235.049 kb on - strand, within MMJJ_RS01220 at 235.050 kb on + strand, within MMJJ_RS01220 at 235.051 kb on - strand, within MMJJ_RS01220 at 235.051 kb on - strand, within MMJJ_RS01220 at 235.051 kb on - strand, within MMJJ_RS01220 at 235.051 kb on - strand, within MMJJ_RS01220 at 235.051 kb on - strand, within MMJJ_RS01220 at 235.051 kb on - strand, within MMJJ_RS01220 at 235.051 kb on - strand, within MMJJ_RS01220 at 235.051 kb on - strand, within MMJJ_RS01220 at 235.051 kb on - strand, within MMJJ_RS01220 at 235.052 kb on + strand, within MMJJ_RS01220 at 235.052 kb on + strand, within MMJJ_RS01220 at 235.052 kb on + strand, within MMJJ_RS01220 at 235.052 kb on + strand, within MMJJ_RS01220 at 235.052 kb on + strand, within MMJJ_RS01220 at 235.052 kb on + strand, within MMJJ_RS01220 at 235.052 kb on + strand, within MMJJ_RS01220 at 235.052 kb on + strand, within MMJJ_RS01220 at 235.052 kb on + strand, within MMJJ_RS01220 at 235.052 kb on + strand, within MMJJ_RS01220 at 235.052 kb on + strand, within MMJJ_RS01220 at 235.053 kb on - strand, within MMJJ_RS01220 at 235.053 kb on - strand, within MMJJ_RS01220 at 235.054 kb on + strand, within MMJJ_RS01220 at 235.084 kb on + strand, within MMJJ_RS01220 at 235.101 kb on + strand, within MMJJ_RS01220 at 235.113 kb on + strand, within MMJJ_RS01220 at 235.138 kb on - strand, within MMJJ_RS01220 at 235.145 kb on - strand, within MMJJ_RS01220 at 235.188 kb on - strand, within MMJJ_RS01220 at 235.310 kb on + strand, within MMJJ_RS01220 at 235.310 kb on + strand, within MMJJ_RS01220 at 235.311 kb on - strand, within MMJJ_RS01220 at 235.332 kb on - strand, within MMJJ_RS01220 at 235.340 kb on + strand, within MMJJ_RS01220 at 235.350 kb on + strand at 235.373 kb on - strand at 235.373 kb on - strand at 235.447 kb on + strand at 235.678 kb on + strand at 235.702 kb on - strand at 235.737 kb on - strand at 235.737 kb on - strand at 235.738 kb on + strand at 235.738 kb on + strand at 235.787 kb on + strand, within MMJJ_RS01230 at 235.803 kb on - strand, within MMJJ_RS01230 at 235.803 kb on - strand, within MMJJ_RS01230 at 235.804 kb on + strand, within MMJJ_RS01230 at 235.842 kb on - strand, within MMJJ_RS01230 at 235.842 kb on - strand, within MMJJ_RS01230 at 235.847 kb on - strand, within MMJJ_RS01230 at 235.871 kb on - strand, within MMJJ_RS01230 at 235.872 kb on + strand, within MMJJ_RS01230 at 235.872 kb on + strand, within MMJJ_RS01230 at 235.903 kb on - strand, within MMJJ_RS01230 at 235.903 kb on - strand, within MMJJ_RS01230 at 235.903 kb on - strand, within MMJJ_RS01230 at 235.903 kb on - strand, within MMJJ_RS01230 at 235.904 kb on + strand, within MMJJ_RS01230 at 235.904 kb on + strand, within MMJJ_RS01230 at 235.904 kb on + strand, within MMJJ_RS01230 at 235.904 kb on + strand, within MMJJ_RS01230 at 235.904 kb on + strand, within MMJJ_RS01230 at 235.904 kb on + strand, within MMJJ_RS01230 at 235.947 kb on + strand, within MMJJ_RS01230 at 235.997 kb on + strand, within MMJJ_RS01230 at 236.027 kb on - strand, within MMJJ_RS01230 at 236.113 kb on + strand at 236.143 kb on - strand at 236.144 kb on + strand at 236.144 kb on + strand at 236.145 kb on - strand at 236.145 kb on - strand at 236.145 kb on - strand at 236.146 kb on + strand at 236.146 kb on + strand at 236.146 kb on + strand at 236.146 kb on + strand at 236.146 kb on + strand at 236.146 kb on + strand at 236.146 kb on + strand at 236.146 kb on + strand at 236.146 kb on + strand at 236.146 kb on + strand at 236.147 kb on - strand at 236.188 kb on + strand at 236.199 kb on - strand at 236.199 kb on - strand at 236.199 kb on - strand at 236.199 kb on - strand at 236.202 kb on + strand at 236.240 kb on - strand at 236.241 kb on + strand at 236.245 kb on + strand at 236.253 kb on - strand at 236.254 kb on + strand at 236.261 kb on - strand at 236.280 kb on - strand at 236.281 kb on + strand at 236.286 kb on + strand at 236.325 kb on + strand at 236.330 kb on - strand at 236.364 kb on + strand at 236.373 kb on - strand at 236.374 kb on + strand at 236.379 kb on + strand at 236.380 kb on - strand at 236.381 kb on + strand at 236.401 kb on - strand at 236.402 kb on + strand at 236.402 kb on + strand at 236.423 kb on + strand at 236.452 kb on + strand at 236.466 kb on - strand at 236.470 kb on + strand at 236.617 kb on + strand, within MMJJ_RS01235 at 236.619 kb on - strand, within MMJJ_RS01235 at 236.620 kb on + strand, within MMJJ_RS01235 at 236.648 kb on - strand, within MMJJ_RS01235 at 236.649 kb on + strand, within MMJJ_RS01235 at 236.726 kb on + strand, within MMJJ_RS01235 at 236.933 kb on - strand, within MMJJ_RS01235 at 236.940 kb on + strand, within MMJJ_RS01235 at 236.955 kb on - strand, within MMJJ_RS01235 at 237.002 kb on - strand, within MMJJ_RS01235 at 237.002 kb on - strand, within MMJJ_RS01235 at 237.009 kb on - strand, within MMJJ_RS01235 at 237.010 kb on + strand, within MMJJ_RS01235 at 237.010 kb on + strand, within MMJJ_RS01235 at 237.049 kb on + strand, within MMJJ_RS01235 at 237.073 kb on - strand, within MMJJ_RS01235 at 237.074 kb on + strand, within MMJJ_RS01235
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 2g/L casaminos remove 234,723 - MMJJ_RS01220 0.39 +1.6 234,764 - MMJJ_RS01220 0.43 +0.4 234,765 + MMJJ_RS01220 0.43 -2.3 234,768 - MMJJ_RS01220 0.43 -1.9 234,769 + MMJJ_RS01220 0.43 +0.2 234,771 + MMJJ_RS01220 0.43 -0.1 234,923 - MMJJ_RS01220 0.56 +0.1 234,924 + MMJJ_RS01220 0.56 -1.4 235,049 - MMJJ_RS01220 0.66 +0.2 235,050 + MMJJ_RS01220 0.66 +0.3 235,051 - MMJJ_RS01220 0.66 +0.9 235,051 - MMJJ_RS01220 0.66 -0.8 235,051 - MMJJ_RS01220 0.66 +0.4 235,051 - MMJJ_RS01220 0.66 -0.2 235,051 - MMJJ_RS01220 0.66 -0.7 235,051 - MMJJ_RS01220 0.66 -0.5 235,051 - MMJJ_RS01220 0.66 +0.2 235,051 - MMJJ_RS01220 0.66 +0.3 235,051 - MMJJ_RS01220 0.66 +0.7 235,052 + MMJJ_RS01220 0.66 -0.3 235,052 + MMJJ_RS01220 0.66 +1.0 235,052 + MMJJ_RS01220 0.66 -0.1 235,052 + MMJJ_RS01220 0.66 +0.4 235,052 + MMJJ_RS01220 0.66 +0.7 235,052 + MMJJ_RS01220 0.66 +0.4 235,052 + MMJJ_RS01220 0.66 +1.0 235,052 + MMJJ_RS01220 0.66 +1.3 235,052 + MMJJ_RS01220 0.66 +0.2 235,052 + MMJJ_RS01220 0.66 -0.7 235,052 + MMJJ_RS01220 0.66 +1.2 235,053 - MMJJ_RS01220 0.66 -0.7 235,053 - MMJJ_RS01220 0.66 -0.1 235,054 + MMJJ_RS01220 0.66 -0.1 235,084 + MMJJ_RS01220 0.69 -0.4 235,101 + MMJJ_RS01220 0.70 +0.2 235,113 + MMJJ_RS01220 0.71 -0.5 235,138 - MMJJ_RS01220 0.73 -1.2 235,145 - MMJJ_RS01220 0.74 -0.5 235,188 - MMJJ_RS01220 0.77 -0.0 235,310 + MMJJ_RS01220 0.87 +0.6 235,310 + MMJJ_RS01220 0.87 +0.6 235,311 - MMJJ_RS01220 0.87 +0.6 235,332 - MMJJ_RS01220 0.89 -2.0 235,340 + MMJJ_RS01220 0.90 +0.9 235,350 + +0.0 235,373 - -0.0 235,373 - +0.3 235,447 + +0.7 235,678 + +0.4 235,702 - +0.6 235,737 - +0.6 235,737 - +0.6 235,738 + -0.8 235,738 + +0.1 235,787 + MMJJ_RS01230 0.21 +0.2 235,803 - MMJJ_RS01230 0.25 -0.1 235,803 - MMJJ_RS01230 0.25 +0.1 235,804 + MMJJ_RS01230 0.25 +0.2 235,842 - MMJJ_RS01230 0.34 -0.6 235,842 - MMJJ_RS01230 0.34 +0.4 235,847 - MMJJ_RS01230 0.35 +0.8 235,871 - MMJJ_RS01230 0.41 +1.0 235,872 + MMJJ_RS01230 0.41 +0.3 235,872 + MMJJ_RS01230 0.41 +1.6 235,903 - MMJJ_RS01230 0.49 +0.4 235,903 - MMJJ_RS01230 0.49 -2.0 235,903 - MMJJ_RS01230 0.49 +0.1 235,903 - MMJJ_RS01230 0.49 -0.7 235,904 + MMJJ_RS01230 0.49 +0.2 235,904 + MMJJ_RS01230 0.49 -1.3 235,904 + MMJJ_RS01230 0.49 +0.3 235,904 + MMJJ_RS01230 0.49 +1.0 235,904 + MMJJ_RS01230 0.49 +1.5 235,904 + MMJJ_RS01230 0.49 +0.5 235,947 + MMJJ_RS01230 0.59 +0.6 235,997 + MMJJ_RS01230 0.71 -0.4 236,027 - MMJJ_RS01230 0.78 +1.0 236,113 + -0.6 236,143 - +1.0 236,144 + -0.9 236,144 + +0.3 236,145 - -0.3 236,145 - -0.4 236,145 - +0.6 236,146 + +0.4 236,146 + -0.0 236,146 + +0.6 236,146 + -0.4 236,146 + -0.2 236,146 + +0.6 236,146 + -0.5 236,146 + -0.5 236,146 + +0.5 236,146 + -0.2 236,147 - -0.2 236,188 + +0.4 236,199 - -0.4 236,199 - +0.2 236,199 - +1.0 236,199 - +0.8 236,202 + +0.8 236,240 - -0.8 236,241 + +0.0 236,245 + +1.1 236,253 - -0.0 236,254 + -1.2 236,261 - -0.4 236,280 - -2.2 236,281 + -1.0 236,286 + +1.2 236,325 + -0.5 236,330 - +0.1 236,364 + -0.0 236,373 - -0.3 236,374 + -2.3 236,379 + -0.2 236,380 - +0.2 236,381 + -0.2 236,401 - +0.2 236,402 + -0.7 236,402 + -1.3 236,423 + -0.5 236,452 + -0.6 236,466 - +0.5 236,470 + +0.6 236,617 + MMJJ_RS01235 0.13 -1.0 236,619 - MMJJ_RS01235 0.13 +0.1 236,620 + MMJJ_RS01235 0.13 -0.9 236,648 - MMJJ_RS01235 0.14 +0.3 236,649 + MMJJ_RS01235 0.14 +0.7 236,726 + MMJJ_RS01235 0.17 -0.5 236,933 - MMJJ_RS01235 0.24 +0.1 236,940 + MMJJ_RS01235 0.24 -0.7 236,955 - MMJJ_RS01235 0.25 -0.4 237,002 - MMJJ_RS01235 0.27 -0.1 237,002 - MMJJ_RS01235 0.27 +0.8 237,009 - MMJJ_RS01235 0.27 +0.5 237,010 + MMJJ_RS01235 0.27 -0.5 237,010 + MMJJ_RS01235 0.27 -0.9 237,049 + MMJJ_RS01235 0.28 +0.3 237,073 - MMJJ_RS01235 0.29 -0.7 237,074 + MMJJ_RS01235 0.29 -0.6
Or see this region's nucleotide sequence