Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS18105

Experiment: R2A with Cobalt chloride 0.15625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cobalt chloride 0.15625 mM
3,949,621	+		LRK54_RS18095	0.60	+1.2
3,949,621	+		LRK54_RS18095	0.60	-0.5
3,949,621	+		LRK54_RS18095	0.60	+1.1
3,949,621	+		LRK54_RS18095	0.60	-0.3
3,949,621	+		LRK54_RS18095	0.60	-1.1
3,949,621	+		LRK54_RS18095	0.60	-1.4
3,949,621	+		LRK54_RS18095	0.60	+0.5
3,949,621	+		LRK54_RS18095	0.60	+0.3
3,949,621	+		LRK54_RS18095	0.60	-0.1
3,949,621	+		LRK54_RS18095	0.60	+2.7
3,949,621	+		LRK54_RS18095	0.60	-0.5
3,949,621	+		LRK54_RS18095	0.60	+1.1
3,949,621	+		LRK54_RS18095	0.60	+1.5
3,949,621	+		LRK54_RS18095	0.60	-1.0
3,949,621	+		LRK54_RS18095	0.60	-0.5
3,949,621	+		LRK54_RS18095	0.60	-0.9
3,949,621	+		LRK54_RS18095	0.60	+1.1
3,949,621	+		LRK54_RS18095	0.60	+1.7
3,949,621	+		LRK54_RS18095	0.60	-1.3
3,949,621	+		LRK54_RS18095	0.60	-0.2
3,949,621	+		LRK54_RS18095	0.60	+0.4
3,949,621	+		LRK54_RS18095	0.60	-1.9
3,949,621	+		LRK54_RS18095	0.60	-1.9
3,949,621	+		LRK54_RS18095	0.60	+1.7
3,949,621	+		LRK54_RS18095	0.60	+1.7
3,949,621	+		LRK54_RS18095	0.60	-0.1
3,949,622	-		LRK54_RS18095	0.60	+1.7
3,949,622	-		LRK54_RS18095	0.60	-1.3
3,949,622	-		LRK54_RS18095	0.60	-0.1
3,949,622	-		LRK54_RS18095	0.60	-2.8
3,949,622	-		LRK54_RS18095	0.60	+0.7
3,949,622	-		LRK54_RS18095	0.60	-0.3
3,949,622	-		LRK54_RS18095	0.60	+0.4
3,949,622	-		LRK54_RS18095	0.60	+2.7
3,949,622	-		LRK54_RS18095	0.60	-0.3
3,949,622	-		LRK54_RS18095	0.60	-0.6
3,949,622	-		LRK54_RS18095	0.60	-0.7
3,949,622	-		LRK54_RS18095	0.60	-0.7
3,949,622	-		LRK54_RS18095	0.60	+4.3
3,949,622	-		LRK54_RS18095	0.60	-2.2
3,949,622	-		LRK54_RS18095	0.60	-1.3
3,949,622	-		LRK54_RS18095	0.60	-0.6
3,949,622	-		LRK54_RS18095	0.60	+0.1
3,949,750	+				-1.4
3,949,750	+				+1.7
3,949,750	+				-2.1
3,949,750	+				+2.7
3,949,750	+				-0.7
3,949,750	+				-1.5
3,949,750	+				-1.5
3,949,750	+				+1.7
3,949,750	+				+1.1
3,949,750	+				+2.7
3,949,750	+				-0.1
3,949,750	+				+0.4
3,949,750	+				+0.4
3,949,751	-				+1.1
3,949,751	-				-0.5
3,949,751	-				+1.7
3,949,751	-				+2.7
3,949,751	-				+0.1
3,949,751	-				-1.8
3,949,751	-				-0.1
3,949,751	-				-0.4
3,949,751	-				-0.6
3,949,751	-				+0.1
3,949,789	+				+0.4
3,949,789	+				+0.4
3,949,789	+				-0.3
3,949,789	+				+0.7
3,949,789	+				-0.1
3,949,789	+				-0.9
3,949,789	+				-1.2
3,949,790	-				+1.7
3,949,790	-				-1.2
3,949,790	-				-1.9
3,949,790	-				-0.7
3,949,790	-				+1.0
3,949,790	-				+1.7
3,949,790	-				+0.1
3,949,790	-				-0.4
3,949,827	+				-0.8
3,949,827	+				-0.8
3,949,827	+				+0.7
3,949,827	+				-1.5
3,949,827	+				+0.1
3,949,827	+				+0.4
3,949,827	+				-1.7
3,949,827	+				-0.1
3,949,827	+				+1.7
3,949,827	+				+2.1
3,949,827	+				+0.3
3,949,827	+				-2.0
3,949,827	+				-1.1
3,949,828	-				+0.7
3,949,828	-				-1.6
3,949,828	-				-1.0
3,949,828	-				+0.0
3,949,828	-				-2.8
3,949,828	-				+1.1
3,949,828	-				-0.6
3,949,828	-				-1.6
3,949,828	-				-2.0
3,949,828	-				+0.1
3,949,828	-				-0.9
3,949,828	-				-0.5
3,949,828	-				-0.5
3,949,828	-				+1.7
3,949,828	-				-1.5
3,949,828	-				+1.1
3,949,843	+		LRK54_RS18100	0.11	+0.7
3,949,843	+		LRK54_RS18100	0.11	+0.9
3,949,843	+		LRK54_RS18100	0.11	-0.7
3,949,844	-		LRK54_RS18100	0.12	+0.3
3,949,844	-		LRK54_RS18100	0.12	-0.2
3,949,844	-		LRK54_RS18100	0.12	-1.2
3,949,844	-		LRK54_RS18100	0.12	-0.5
3,949,844	-		LRK54_RS18100	0.12	-0.1
3,949,844	-		LRK54_RS18100	0.12	+0.1
3,949,844	-		LRK54_RS18100	0.12	+0.4
3,949,844	-		LRK54_RS18100	0.12	+0.4
3,949,844	-		LRK54_RS18100	0.12	+1.7
3,949,844	-		LRK54_RS18100	0.12	-2.5
3,949,980	+		LRK54_RS18100	0.33	-1.4
3,949,980	+		LRK54_RS18100	0.33	+0.4
3,949,980	+		LRK54_RS18100	0.33	+1.1
3,949,980	+		LRK54_RS18100	0.33	-2.2
3,949,980	+		LRK54_RS18100	0.33	+3.0
3,949,980	+		LRK54_RS18100	0.33	+3.3
3,949,980	+		LRK54_RS18100	0.33	+1.7
3,949,980	+		LRK54_RS18100	0.33	+0.2
3,949,980	+		LRK54_RS18100	0.33	+1.4
3,949,980	+		LRK54_RS18100	0.33	-1.4
3,949,980	+		LRK54_RS18100	0.33	-0.7
3,949,980	+		LRK54_RS18100	0.33	+0.1
3,949,980	+		LRK54_RS18100	0.33	+2.0
3,949,980	+		LRK54_RS18100	0.33	-0.9
3,949,980	+		LRK54_RS18100	0.33	+1.1
3,949,981	-		LRK54_RS18100	0.33	-2.4
3,949,981	-		LRK54_RS18100	0.33	-0.1
3,949,981	-		LRK54_RS18100	0.33	-0.5
3,949,981	-		LRK54_RS18100	0.33	+1.1
3,949,981	-		LRK54_RS18100	0.33	-0.6
3,949,981	-		LRK54_RS18100	0.33	-0.7
3,949,981	-		LRK54_RS18100	0.33	+0.1
3,949,981	-		LRK54_RS18100	0.33	+0.4
3,949,981	-		LRK54_RS18100	0.33	+1.1
3,949,981	-		LRK54_RS18100	0.33	-1.5
3,949,981	-		LRK54_RS18100	0.33	-0.9
3,949,981	-		LRK54_RS18100	0.33	+2.1
3,949,981	-		LRK54_RS18100	0.33	+0.5
3,949,981	-		LRK54_RS18100	0.33	-0.1
3,949,981	-		LRK54_RS18100	0.33	+2.7
3,950,274	+		LRK54_RS18100	0.78	-0.1
3,950,274	+		LRK54_RS18100	0.78	+1.1
3,950,275	-		LRK54_RS18100	0.78	+1.4
3,950,275	-		LRK54_RS18100	0.78	-0.6
3,950,275	-		LRK54_RS18100	0.78	+0.5
3,950,275	-		LRK54_RS18100	0.78	-0.9
3,950,275	-		LRK54_RS18100	0.78	-0.5
3,950,301	+		LRK54_RS18100	0.82	-0.5
3,950,301	+		LRK54_RS18100	0.82	-0.7
3,950,301	+		LRK54_RS18100	0.82	-1.2
3,950,302	-		LRK54_RS18100	0.82	-0.5
3,950,302	-		LRK54_RS18100	0.82	+1.1
3,950,418	+				+0.1
3,950,418	+				+1.1
3,950,418	+				+2.7
3,950,418	+				-1.5
3,950,418	+				-1.2
3,950,418	+				-0.3
3,950,418	+				-1.2
3,950,419	-				-0.9
3,950,419	-				-0.2
3,950,419	-				-1.3
3,950,419	-				+2.7
3,950,419	-				-1.1
3,950,419	-				+1.1
3,950,419	-				-1.0
3,950,419	-				-2.5
3,950,502	+		LRK54_RS18105	0.13	+0.1
3,950,503	-		LRK54_RS18105	0.13	+0.3
3,950,503	-		LRK54_RS18105	0.13	+0.7
3,950,568	+		LRK54_RS18105	0.23	+0.7
3,950,694	+		LRK54_RS18105	0.42	-1.9
3,950,695	-		LRK54_RS18105	0.42	+2.3
3,950,695	-		LRK54_RS18105	0.42	+0.3
3,950,695	-		LRK54_RS18105	0.42	+0.1
3,950,695	-		LRK54_RS18105	0.42	-1.3
3,950,755	+		LRK54_RS18105	0.51	-0.3
3,950,755	+		LRK54_RS18105	0.51	+1.1
3,950,756	-		LRK54_RS18105	0.52	-1.3
3,950,756	-		LRK54_RS18105	0.52	+0.3
3,950,756	-		LRK54_RS18105	0.52	+0.7
3,950,826	+		LRK54_RS18105	0.62	-0.1
3,950,826	+		LRK54_RS18105	0.62	-0.7
3,950,827	-		LRK54_RS18105	0.62	+0.0
3,951,326	+		LRK54_RS18110	0.47	+0.7
3,951,326	+		LRK54_RS18110	0.47	-0.8
3,951,326	+		LRK54_RS18110	0.47	+0.4
3,951,326	+		LRK54_RS18110	0.47	-1.5
3,951,326	+		LRK54_RS18110	0.47	-1.2
3,951,326	+		LRK54_RS18110	0.47	-1.4
3,951,326	+		LRK54_RS18110	0.47	+0.7
3,951,326	+		LRK54_RS18110	0.47	+0.7
3,951,326	+		LRK54_RS18110	0.47	+1.7
3,951,326	+		LRK54_RS18110	0.47	+0.7
3,951,327	-		LRK54_RS18110	0.47	-0.3
3,951,327	-		LRK54_RS18110	0.47	-1.9
3,951,327	-		LRK54_RS18110	0.47	-2.0
3,951,327	-		LRK54_RS18110	0.47	-1.6
3,951,327	-		LRK54_RS18110	0.47	+1.1
3,951,327	-		LRK54_RS18110	0.47	-2.5
3,951,327	-		LRK54_RS18110	0.47	-1.3
3,951,327	-		LRK54_RS18110	0.47	-0.5
3,951,327	-		LRK54_RS18110	0.47	-0.9
3,951,327	-		LRK54_RS18110	0.47	+0.7
3,951,327	-		LRK54_RS18110	0.47	-2.0
3,951,350	+		LRK54_RS18110	0.51	+2.7
3,951,351	-		LRK54_RS18110	0.51	-2.0
3,951,351	-		LRK54_RS18110	0.51	-0.2
3,951,351	-		LRK54_RS18110	0.51	-1.0
3,951,374	+		LRK54_RS18110	0.56	+0.3
3,951,374	+		LRK54_RS18110	0.56	+0.1
3,951,374	+		LRK54_RS18110	0.56	+0.4
3,951,374	+		LRK54_RS18110	0.56	+1.5
3,951,374	+		LRK54_RS18110	0.56	-1.5
3,951,374	+		LRK54_RS18110	0.56	+0.6
3,951,374	+		LRK54_RS18110	0.56	-0.5
3,951,374	+		LRK54_RS18110	0.56	+1.1
3,951,374	+		LRK54_RS18110	0.56	+1.7
3,951,374	+		LRK54_RS18110	0.56	-1.7
3,951,374	+		LRK54_RS18110	0.56	-0.1
3,951,374	+		LRK54_RS18110	0.56	+0.9
3,951,374	+		LRK54_RS18110	0.56	+0.4
3,951,375	-		LRK54_RS18110	0.56	-0.3
3,951,375	-		LRK54_RS18110	0.56	-1.1
3,951,375	-		LRK54_RS18110	0.56	+1.1
3,951,375	-		LRK54_RS18110	0.56	-0.1
3,951,375	-		LRK54_RS18110	0.56	+1.0
3,951,375	-		LRK54_RS18110	0.56	+0.4
3,951,375	-		LRK54_RS18110	0.56	-0.8
3,951,375	-		LRK54_RS18110	0.56	+0.0
3,951,375	-		LRK54_RS18110	0.56	-1.3
3,951,375	-		LRK54_RS18110	0.56	+1.4
3,951,375	-		LRK54_RS18110	0.56	-0.6
3,951,389	+		LRK54_RS18110	0.58	-1.0
3,951,389	+		LRK54_RS18110	0.58	-1.2
3,951,389	+		LRK54_RS18110	0.58	-0.6
3,951,389	+		LRK54_RS18110	0.58	+0.6
3,951,389	+		LRK54_RS18110	0.58	-0.9
3,951,389	+		LRK54_RS18110	0.58	+0.7
3,951,390	-		LRK54_RS18110	0.59	-3.0
3,951,390	-		LRK54_RS18110	0.59	+3.3
3,951,408	+		LRK54_RS18110	0.62	+0.7
3,951,467	+		LRK54_RS18110	0.73	-0.5
3,951,527	+		LRK54_RS18110	0.84	-1.2
3,951,569	+				-0.4
3,951,569	+				+1.7
3,951,569	+				-1.9
3,951,569	+				+0.4
3,951,570	-				-0.3
3,951,570	-				-0.1
3,951,570	-				+0.7
3,951,570	-				-0.1
3,951,570	-				-1.5
3,951,578	+				-1.3
3,951,578	+				+2.7
3,951,578	+				-0.3
3,951,578	+				-1.0
3,951,578	+				-0.5
3,951,578	+				-2.0
3,951,579	-				+1.1
3,951,579	-				-2.1
3,951,579	-				+0.3
3,951,579	-				-0.7
3,951,579	-				-1.0
3,951,579	-				-0.2
3,951,579	-				-1.0
3,951,579	-				-0.3
3,951,579	-				-0.6
3,951,579	-				-0.5
3,951,584	+				-0.2
3,951,584	+				-1.6
3,951,584	+				+1.7
3,951,585	-				-1.2
3,951,585	-				-0.5
3,951,650	+				-1.6
3,951,650	+				+1.1
3,951,650	+				+2.7
3,951,650	+				-1.3
3,951,650	+				+2.7
3,951,650	+				-1.7
3,951,650	+				+1.1
3,951,650	+				-0.7
3,951,650	+				+1.1
3,951,650	+				+0.3
3,951,650	+				-1.3
3,951,650	+				+0.9
3,951,650	+				-0.6
3,951,650	+				+2.7
3,951,650	+				+0.4
3,951,650	+				-1.0
3,951,650	+				-0.9
3,951,650	+				-0.4
3,951,650	+				-0.9
3,951,650	+				+0.4
3,951,650	+				-0.1
3,951,650	+				-0.7
3,951,650	+				-0.6
3,951,650	+				-1.7
3,951,651	-				+1.2
3,951,651	-				+0.4
3,951,651	-				-0.6
3,951,651	-				-0.5
3,951,651	-				+0.7
3,951,651	-				+0.7
3,951,651	-				-0.1
3,951,651	-				-0.5
3,951,651	-				+0.4
3,951,651	-				-0.5
3,951,651	-				-0.1
3,951,651	-				-0.3
3,951,651	-				-1.7
3,951,651	-				-1.4
3,951,651	-				-0.3
3,951,651	-				-1.1
3,951,651	-				+0.4
3,951,651	-				-1.0
3,951,651	-				-1.7
3,951,651	-				-1.7
3,951,651	-				+0.1
3,951,651	-				-0.3
3,951,651	-				-1.6
3,951,749	+				-1.1
3,951,749	+				-0.1
3,951,749	+				-0.6
3,951,749	+				-1.2
3,951,749	+				-1.2
3,951,749	+				-0.5
3,951,749	+				-0.3
3,951,749	+				-0.5
3,951,749	+				+1.1
3,951,749	+				-0.6
3,951,749	+				-0.6
3,951,749	+				-1.7
3,951,749	+				+0.3
3,951,749	+				-1.5
3,951,749	+				+1.1
3,951,749	+				+0.7
3,951,749	+				+2.7
3,951,749	+				-2.2
3,951,749	+				-1.7
3,951,749	+				-1.2
3,951,749	+				-1.2
3,951,749	+				-1.4
3,951,749	+				+1.1
3,951,750	-				+1.4
3,951,750	-				+0.4
3,951,750	-				+1.7
3,951,750	-				-1.0
3,951,750	-				+0.4
3,951,750	-				-2.2
3,951,750	-				-0.3
3,951,750	-				-1.8
3,951,750	-				-1.1
3,951,750	-				-0.7
3,951,750	-				+1.1
3,951,750	-				-0.6
3,951,750	-				-1.5
3,951,750	-				-0.3
3,951,750	-				-1.1
3,951,750	-				+0.1
3,951,750	-				-1.8
3,951,750	-				+0.6
3,951,750	-				-0.7
3,951,750	-				-1.8
3,951,750	-				+0.1
3,951,750	-				-3.3
3,951,750	-				-0.5
3,951,750	-				-2.1
3,951,750	-				+1.7
3,951,985	+		LRK54_RS18115	0.17	-0.5
3,951,985	+		LRK54_RS18115	0.17	+0.1
3,951,985	+		LRK54_RS18115	0.17	-1.1
3,951,985	+		LRK54_RS18115	0.17	+2.1
3,951,985	+		LRK54_RS18115	0.17	+2.7
3,951,985	+		LRK54_RS18115	0.17	+0.7
3,951,985	+		LRK54_RS18115	0.17	+0.4
3,951,985	+		LRK54_RS18115	0.17	-1.0
3,951,985	+		LRK54_RS18115	0.17	-1.0
3,951,986	-		LRK54_RS18115	0.17	+1.1
3,951,986	-		LRK54_RS18115	0.17	+0.5
3,951,986	-		LRK54_RS18115	0.17	+0.5
3,951,986	-		LRK54_RS18115	0.17	-1.2
3,951,986	-		LRK54_RS18115	0.17	+0.1
3,951,986	-		LRK54_RS18115	0.17	-0.5
3,951,986	-		LRK54_RS18115	0.17	-1.7
3,951,986	-		LRK54_RS18115	0.17	-0.5
3,951,986	-		LRK54_RS18115	0.17	+1.1
3,951,986	-		LRK54_RS18115	0.17	-0.3
3,951,986	-		LRK54_RS18115	0.17	+0.1