Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05825

Experiment: R2A with Cobalt chloride 0.15625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cobalt chloride 0.15625 mM
1,254,535	+				-1.0
1,254,535	+				-0.4
1,254,535	+				+1.1
1,254,535	+				-1.6
1,254,535	+				+1.3
1,254,535	+				+0.8
1,254,535	+				+0.0
1,254,535	+				-1.9
1,254,535	+				-0.2
1,254,535	+				+0.7
1,254,535	+				-2.1
1,254,535	+				+1.3
1,254,536	-				+0.3
1,254,536	-				-1.1
1,254,536	-				+0.0
1,254,536	-				+1.2
1,254,536	-				-1.7
1,254,536	-				-1.6
1,254,536	-				+0.8
1,254,536	-				+1.8
1,254,536	-				+0.5
1,254,536	-				-0.6
1,254,536	-				+0.3
1,254,536	-				+0.6
1,254,536	-				+0.0
1,254,536	-				+1.8
1,254,536	-				-2.6
1,254,536	-				-0.2
1,254,536	-				-0.2
1,254,630	+		LRK54_RS05820	0.12	-1.6
1,254,630	+		LRK54_RS05820	0.12	+2.8
1,254,630	+		LRK54_RS05820	0.12	-1.3
1,254,630	+		LRK54_RS05820	0.12	-1.9
1,254,630	+		LRK54_RS05820	0.12	+0.7
1,254,630	+		LRK54_RS05820	0.12	-1.6
1,254,630	+		LRK54_RS05820	0.12	+0.3
1,254,630	+		LRK54_RS05820	0.12	-1.9
1,254,630	+		LRK54_RS05820	0.12	-2.8
1,254,630	+		LRK54_RS05820	0.12	-0.3
1,254,631	-		LRK54_RS05820	0.12	+0.8
1,254,631	-		LRK54_RS05820	0.12	-1.2
1,254,631	-		LRK54_RS05820	0.12	+0.5
1,254,631	-		LRK54_RS05820	0.12	-0.2
1,254,631	-		LRK54_RS05820	0.12	-0.1
1,254,631	-		LRK54_RS05820	0.12	-1.9
1,254,631	-		LRK54_RS05820	0.12	-1.6
1,254,631	-		LRK54_RS05820	0.12	+0.5
1,254,631	-		LRK54_RS05820	0.12	+1.0
1,254,631	-		LRK54_RS05820	0.12	-1.2
1,254,631	-		LRK54_RS05820	0.12	+0.5
1,254,631	-		LRK54_RS05820	0.12	-1.7
1,254,631	-		LRK54_RS05820	0.12	-0.9
1,254,631	-		LRK54_RS05820	0.12	-1.7
1,254,631	-		LRK54_RS05820	0.12	-0.2
1,254,631	-		LRK54_RS05820	0.12	-0.4
1,254,631	-		LRK54_RS05820	0.12	-2.1
1,254,631	-		LRK54_RS05820	0.12	-1.2
1,254,631	-		LRK54_RS05820	0.12	+0.3
1,254,631	-		LRK54_RS05820	0.12	+0.5
1,254,631	-		LRK54_RS05820	0.12	+2.8
1,254,680	+		LRK54_RS05820	0.18	-0.7
1,254,680	+		LRK54_RS05820	0.18	-2.2
1,254,680	+		LRK54_RS05820	0.18	-0.2
1,254,680	+		LRK54_RS05820	0.18	-2.4
1,254,680	+		LRK54_RS05820	0.18	+0.0
1,254,680	+		LRK54_RS05820	0.18	+1.3
1,254,680	+		LRK54_RS05820	0.18	+0.3
1,254,680	+		LRK54_RS05820	0.18	-2.0
1,254,680	+		LRK54_RS05820	0.18	+2.8
1,254,680	+		LRK54_RS05820	0.18	-0.4
1,254,681	-		LRK54_RS05820	0.19	-0.6
1,254,681	-		LRK54_RS05820	0.19	-0.2
1,254,681	-		LRK54_RS05820	0.19	-2.0
1,254,681	-		LRK54_RS05820	0.19	-1.4
1,254,681	-		LRK54_RS05820	0.19	-2.0
1,254,681	-		LRK54_RS05820	0.19	+0.3
1,254,681	-		LRK54_RS05820	0.19	-0.3
1,254,681	-		LRK54_RS05820	0.19	+0.8
1,254,681	-		LRK54_RS05820	0.19	+0.8
1,254,681	-		LRK54_RS05820	0.19	-2.4
1,254,780	+		LRK54_RS05820	0.32	-0.0
1,254,780	+		LRK54_RS05820	0.32	+0.0
1,254,780	+		LRK54_RS05820	0.32	+2.8
1,254,780	+		LRK54_RS05820	0.32	+2.8
1,254,780	+		LRK54_RS05820	0.32	-0.3
1,254,780	+		LRK54_RS05820	0.32	+0.5
1,254,780	+		LRK54_RS05820	0.32	-1.5
1,254,780	+		LRK54_RS05820	0.32	+1.3
1,254,781	-		LRK54_RS05820	0.32	-1.8
1,254,781	-		LRK54_RS05820	0.32	+1.0
1,254,781	-		LRK54_RS05820	0.32	-1.2
1,254,781	-		LRK54_RS05820	0.32	-1.0
1,254,781	-		LRK54_RS05820	0.32	-1.2
1,254,781	-		LRK54_RS05820	0.32	+0.4
1,254,781	-		LRK54_RS05820	0.32	-0.3
1,254,781	-		LRK54_RS05820	0.32	-2.0
1,254,834	+		LRK54_RS05820	0.39	-1.3
1,254,909	+		LRK54_RS05820	0.48	-1.1
1,254,909	+		LRK54_RS05820	0.48	+1.8
1,254,909	+		LRK54_RS05820	0.48	-0.4
1,254,910	-		LRK54_RS05820	0.48	-0.6
1,254,910	-		LRK54_RS05820	0.48	+0.3
1,254,910	-		LRK54_RS05820	0.48	-1.2
1,254,910	-		LRK54_RS05820	0.48	-0.0
1,254,910	-		LRK54_RS05820	0.48	-1.9
1,254,910	-		LRK54_RS05820	0.48	-1.3
1,254,910	-		LRK54_RS05820	0.48	+2.1
1,254,910	-		LRK54_RS05820	0.48	-1.0
1,254,921	+		LRK54_RS05820	0.50	+3.8
1,254,921	+		LRK54_RS05820	0.50	-1.0
1,254,921	+		LRK54_RS05820	0.50	-1.0
1,254,922	-		LRK54_RS05820	0.50	-1.6
1,254,922	-		LRK54_RS05820	0.50	+1.0
1,254,922	-		LRK54_RS05820	0.50	-1.6
1,254,922	-		LRK54_RS05820	0.50	-1.7
1,254,922	-		LRK54_RS05820	0.50	+0.0
1,254,922	-		LRK54_RS05820	0.50	-2.0
1,254,957	+		LRK54_RS05820	0.55	-1.7
1,254,957	+		LRK54_RS05820	0.55	-1.1
1,254,957	+		LRK54_RS05820	0.55	-1.9
1,254,957	+		LRK54_RS05820	0.55	-1.5
1,254,957	+		LRK54_RS05820	0.55	-1.9
1,254,957	+		LRK54_RS05820	0.55	-1.4
1,254,957	+		LRK54_RS05820	0.55	-2.3
1,254,957	+		LRK54_RS05820	0.55	-0.0
1,254,957	+		LRK54_RS05820	0.55	-1.2
1,254,957	+		LRK54_RS05820	0.55	-0.2
1,254,958	-		LRK54_RS05820	0.55	+0.0
1,254,958	-		LRK54_RS05820	0.55	-1.1
1,254,958	-		LRK54_RS05820	0.55	-1.5
1,254,958	-		LRK54_RS05820	0.55	+0.3
1,254,958	-		LRK54_RS05820	0.55	-0.7
1,254,958	-		LRK54_RS05820	0.55	-3.2
1,255,050	+		LRK54_RS05820	0.67	-0.2
1,255,050	+		LRK54_RS05820	0.67	-0.2
1,255,050	+		LRK54_RS05820	0.67	-1.0
1,255,050	+		LRK54_RS05820	0.67	-0.3
1,255,050	+		LRK54_RS05820	0.67	-1.0
1,255,050	+		LRK54_RS05820	0.67	+1.0
1,255,050	+		LRK54_RS05820	0.67	-1.8
1,255,050	+		LRK54_RS05820	0.67	+0.3
1,255,050	+		LRK54_RS05820	0.67	-0.6
1,255,051	-		LRK54_RS05820	0.67	-0.2
1,255,051	-		LRK54_RS05820	0.67	+0.3
1,255,051	-		LRK54_RS05820	0.67	-0.1
1,255,051	-		LRK54_RS05820	0.67	-0.9
1,255,051	-		LRK54_RS05820	0.67	-1.7
1,255,236	+				+1.3
1,255,236	+				+0.5
1,255,236	+				-1.5
1,255,236	+				-2.4
1,255,236	+				-1.9
1,255,236	+				+1.8
1,255,236	+				-1.5
1,255,237	-				-1.8
1,255,237	-				-1.2
1,255,237	-				-1.8
1,255,237	-				-1.7
1,255,237	-				+0.8
1,255,237	-				+0.1
1,255,237	-				+1.3
1,255,386	+				+0.3
1,255,386	+				+0.0
1,255,386	+				+1.3
1,255,386	+				-0.9
1,255,386	+				+1.8
1,255,386	+				-0.9
1,255,386	+				-1.1
1,255,386	+				+1.8
1,255,387	-				-0.3
1,255,387	-				-2.6
1,255,387	-				-1.7
1,255,387	-				-1.6
1,255,387	-				+0.8
1,255,387	-				+0.0
1,255,391	+				+2.8
1,255,391	+				-2.2
1,255,391	+				+1.8
1,255,392	-				-1.3
1,255,515	+				-1.2
1,255,515	+				+1.3
1,255,515	+				-0.3
1,255,515	+				-1.0
1,255,515	+				-1.2
1,255,515	+				-1.0
1,255,515	+				-1.4
1,255,515	+				-1.5
1,255,515	+				+1.3
1,255,515	+				-1.9
1,255,515	+				+0.3
1,255,515	+				-1.9
1,255,515	+				-0.3
1,255,515	+				+1.8
1,255,515	+				+0.5
1,255,515	+				-0.2
1,255,515	+				-2.0
1,255,515	+				-1.0
1,255,516	-				-3.0
1,255,516	-				-0.2
1,255,516	-				+1.1
1,255,516	-				+0.1
1,255,516	-				+0.5
1,255,516	-				-1.1
1,255,516	-				+1.3
1,255,516	-				+0.5
1,255,516	-				-0.7
1,255,516	-				+1.8
1,255,516	-				+0.5
1,255,516	-				+0.0
1,255,516	-				+1.1
1,255,516	-				-1.1
1,255,516	-				-0.8
1,255,516	-				-0.9
1,255,516	-				-1.0
1,255,516	-				-1.6
1,255,516	-				-0.5
1,255,535	+				-0.1
1,255,536	-				-0.3
1,255,567	-				+0.0
1,255,567	-				+0.7
1,255,567	-				+0.2
1,255,590	+				-1.4
1,255,590	+				-2.4
1,255,590	+				-2.5
1,255,590	+				-0.7
1,255,590	+				+1.8
1,255,590	+				+0.0
1,255,590	+				-1.2
1,255,590	+				+0.5
1,255,590	+				+2.8
1,255,590	+				-0.5
1,255,590	+				-0.4
1,255,590	+				+1.0
1,255,590	+				+0.8
1,255,590	+				-2.0
1,255,590	+				-0.1
1,255,590	+				+0.5
1,255,590	+				-1.0
1,255,591	-				-0.6
1,255,591	-				+0.3
1,255,591	-				-0.1
1,255,591	-				+0.5
1,255,591	-				-0.9
1,255,591	-				+1.8
1,255,591	-				+0.1
1,255,591	-				-0.5
1,255,591	-				-1.0
1,255,591	-				+1.3
1,255,591	-				+0.2
1,255,591	-				-1.8
1,255,591	-				+0.0
1,255,591	-				+1.0
1,255,591	-				+1.0
1,255,591	-				-1.4
1,255,591	-				+1.8
1,255,591	-				-1.5
1,255,591	-				-0.7
1,255,591	-				-1.7
1,255,591	-				-1.0
1,255,591	-				+1.8
1,255,803	+		LRK54_RS05825	0.26	-1.1
1,255,803	+		LRK54_RS05825	0.26	-1.0
1,255,803	+		LRK54_RS05825	0.26	-2.3
1,255,803	+		LRK54_RS05825	0.26	+0.0
1,255,803	+		LRK54_RS05825	0.26	-0.6
1,255,803	+		LRK54_RS05825	0.26	-1.4
1,255,803	+		LRK54_RS05825	0.26	+0.3
1,255,803	+		LRK54_RS05825	0.26	+0.0
1,255,804	-		LRK54_RS05825	0.26	+0.3
1,255,804	-		LRK54_RS05825	0.26	+0.1
1,255,804	-		LRK54_RS05825	0.26	-0.5
1,255,804	-		LRK54_RS05825	0.26	-0.8
1,255,804	-		LRK54_RS05825	0.26	+1.3
1,255,804	-		LRK54_RS05825	0.26	-1.1
1,255,804	-		LRK54_RS05825	0.26	+2.8
1,255,804	-		LRK54_RS05825	0.26	-1.5
1,255,804	-		LRK54_RS05825	0.26	+2.8
1,255,804	-		LRK54_RS05825	0.26	-0.5
1,255,804	-		LRK54_RS05825	0.26	-0.3
1,255,824	+		LRK54_RS05825	0.27	+0.7
1,255,824	+		LRK54_RS05825	0.27	+1.3
1,255,824	+		LRK54_RS05825	0.27	+2.8
1,255,825	-		LRK54_RS05825	0.27	-0.7
1,255,825	-		LRK54_RS05825	0.27	-2.4
1,255,825	-		LRK54_RS05825	0.27	-1.4
1,255,825	-		LRK54_RS05825	0.27	+2.8
1,255,825	-		LRK54_RS05825	0.27	-1.7
1,256,018	+		LRK54_RS05825	0.43	-1.7
1,256,018	+		LRK54_RS05825	0.43	-0.6
1,256,019	-		LRK54_RS05825	0.43	+1.8
1,256,019	-		LRK54_RS05825	0.43	-0.5
1,256,019	-		LRK54_RS05825	0.43	-1.2
1,256,055	+		LRK54_RS05825	0.46	+1.8
1,256,055	+		LRK54_RS05825	0.46	-0.5
1,256,055	+		LRK54_RS05825	0.46	-0.8
1,256,056	-		LRK54_RS05825	0.46	-0.7
1,256,056	-		LRK54_RS05825	0.46	+0.5
1,256,112	+		LRK54_RS05825	0.50	-1.3
1,256,112	+		LRK54_RS05825	0.50	-1.3
1,256,112	+		LRK54_RS05825	0.50	-2.2
1,256,112	+		LRK54_RS05825	0.50	-2.2
1,256,112	+		LRK54_RS05825	0.50	-2.2
1,256,112	+		LRK54_RS05825	0.50	-1.6
1,256,112	+		LRK54_RS05825	0.50	+0.0
1,256,112	+		LRK54_RS05825	0.50	-1.2
1,256,112	+		LRK54_RS05825	0.50	+0.5
1,256,112	+		LRK54_RS05825	0.50	-0.2
1,256,112	+		LRK54_RS05825	0.50	-2.7
1,256,112	+		LRK54_RS05825	0.50	-0.3
1,256,112	+		LRK54_RS05825	0.50	+1.3
1,256,112	+		LRK54_RS05825	0.50	-0.6
1,256,112	+		LRK54_RS05825	0.50	+1.0
1,256,112	+		LRK54_RS05825	0.50	-0.8
1,256,113	-		LRK54_RS05825	0.51	-0.5
1,256,113	-		LRK54_RS05825	0.51	-0.9
1,256,113	-		LRK54_RS05825	0.51	-0.5
1,256,113	-		LRK54_RS05825	0.51	-1.6
1,256,113	-		LRK54_RS05825	0.51	+0.0
1,256,113	-		LRK54_RS05825	0.51	+1.8
1,256,113	-		LRK54_RS05825	0.51	-1.1
1,256,113	-		LRK54_RS05825	0.51	+0.3
1,256,113	-		LRK54_RS05825	0.51	+0.6
1,256,113	-		LRK54_RS05825	0.51	+0.1
1,256,113	-		LRK54_RS05825	0.51	-2.3
1,256,113	-		LRK54_RS05825	0.51	-2.2
1,256,113	-		LRK54_RS05825	0.51	+0.8
1,256,113	-		LRK54_RS05825	0.51	-1.1
1,256,113	-		LRK54_RS05825	0.51	+0.4
1,256,113	-		LRK54_RS05825	0.51	-0.2
1,256,113	-		LRK54_RS05825	0.51	+2.8
1,256,113	-		LRK54_RS05825	0.51	-1.3
1,256,113	-		LRK54_RS05825	0.51	+1.8
1,256,133	+		LRK54_RS05825	0.52	-2.7
1,256,133	+		LRK54_RS05825	0.52	-1.3
1,256,133	+		LRK54_RS05825	0.52	-0.2
1,256,133	+		LRK54_RS05825	0.52	+0.8
1,256,133	+		LRK54_RS05825	0.52	-1.4
1,256,133	+		LRK54_RS05825	0.52	-2.6
1,256,133	+		LRK54_RS05825	0.52	-0.3
1,256,133	+		LRK54_RS05825	0.52	-1.3
1,256,133	+		LRK54_RS05825	0.52	-0.5
1,256,133	+		LRK54_RS05825	0.52	-0.3
1,256,133	+		LRK54_RS05825	0.52	+0.3
1,256,133	+		LRK54_RS05825	0.52	-1.7
1,256,133	+		LRK54_RS05825	0.52	-0.7
1,256,134	-		LRK54_RS05825	0.52	+0.5
1,256,134	-		LRK54_RS05825	0.52	-2.3
1,256,134	-		LRK54_RS05825	0.52	-0.9
1,256,134	-		LRK54_RS05825	0.52	-1.7
1,256,134	-		LRK54_RS05825	0.52	-0.2
1,256,134	-		LRK54_RS05825	0.52	-1.7
1,256,134	-		LRK54_RS05825	0.52	+0.3
1,256,134	-		LRK54_RS05825	0.52	-1.6
1,256,134	-		LRK54_RS05825	0.52	+0.5
1,256,134	-		LRK54_RS05825	0.52	+0.5
1,256,134	-		LRK54_RS05825	0.52	-0.6
1,256,134	-		LRK54_RS05825	0.52	+0.5
1,256,134	-		LRK54_RS05825	0.52	-0.8
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