Experiment: PYE with Carbenicillin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03655 and CCNA_03656 are separated by 9 nucleotides CCNA_03656 and CCNA_03657 are separated by 12 nucleotides CCNA_03657 and CCNA_03658 are separated by 12 nucleotides
CCNA_03655: CCNA_03655 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,816,172 to 3,817,485
_03655
CCNA_03656: CCNA_03656 - acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, at 3,817,495 to 3,818,418
_03656
CCNA_03657: CCNA_03657 - tryptophan synthase alpha chain, at 3,818,431 to 3,819,258
_03657
CCNA_03658: CCNA_03658 - tryptophan synthase beta chain, at 3,819,271 to 3,820,491
_03658
Position (kb)
3817
3818
3819 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3817.444 kb on - strand at 3817.444 kb on - strand at 3817.444 kb on - strand at 3817.492 kb on + strand at 3817.492 kb on + strand at 3817.492 kb on + strand at 3817.492 kb on + strand at 3817.492 kb on + strand at 3817.500 kb on - strand at 3817.500 kb on - strand at 3817.500 kb on - strand at 3817.500 kb on - strand at 3817.500 kb on - strand at 3817.500 kb on - strand at 3817.500 kb on - strand at 3818.422 kb on - strand at 3818.429 kb on - strand at 3818.436 kb on - strand at 3818.463 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.480 kb on - strand at 3818.542 kb on + strand, within CCNA_03657 at 3818.550 kb on - strand, within CCNA_03657 at 3818.646 kb on - strand, within CCNA_03657 at 3818.659 kb on + strand, within CCNA_03657 at 3818.671 kb on + strand, within CCNA_03657 at 3818.744 kb on - strand, within CCNA_03657 at 3818.790 kb on - strand at 3818.893 kb on - strand, within CCNA_03657 at 3818.926 kb on - strand, within CCNA_03657 at 3818.936 kb on + strand, within CCNA_03657 at 3818.945 kb on + strand, within CCNA_03657 at 3818.953 kb on + strand, within CCNA_03657 at 3818.958 kb on - strand, within CCNA_03657 at 3819.011 kb on - strand, within CCNA_03657 at 3819.019 kb on - strand, within CCNA_03657 at 3819.078 kb on - strand, within CCNA_03657 at 3819.092 kb on - strand, within CCNA_03657 at 3819.108 kb on - strand, within CCNA_03657 at 3819.255 kb on - strand at 3819.276 kb on - strand at 3819.308 kb on - strand at 3819.347 kb on + strand at 3819.355 kb on - strand at 3819.361 kb on - strand at 3819.371 kb on - strand at 3819.391 kb on - strand at 3819.402 kb on - strand, within CCNA_03658
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml remove 3,817,444 - +1.3 3,817,444 - +1.6 3,817,444 - +0.6 3,817,492 + -1.0 3,817,492 + -1.2 3,817,492 + -0.6 3,817,492 + -2.4 3,817,492 + -1.6 3,817,500 - +2.1 3,817,500 - +1.5 3,817,500 - +2.0 3,817,500 - +3.8 3,817,500 - +1.2 3,817,500 - +1.4 3,817,500 - +1.5 3,818,422 - +1.1 3,818,429 - +1.0 3,818,436 - +2.1 3,818,463 - +1.3 3,818,470 - -1.1 3,818,470 - +2.6 3,818,470 - -0.3 3,818,470 - -0.8 3,818,470 - -0.6 3,818,470 - -0.5 3,818,470 - -1.3 3,818,470 - +0.2 3,818,470 - +0.8 3,818,470 - -0.5 3,818,470 - +2.0 3,818,470 - +0.3 3,818,470 - +0.3 3,818,470 - -1.0 3,818,470 - -0.1 3,818,470 - +0.3 3,818,470 - -0.2 3,818,470 - +1.1 3,818,470 - -0.6 3,818,470 - +1.1 3,818,470 - +1.1 3,818,480 - -0.9 3,818,542 + CCNA_03657 0.13 -0.8 3,818,550 - CCNA_03657 0.14 +1.4 3,818,646 - CCNA_03657 0.26 +0.4 3,818,659 + CCNA_03657 0.28 -0.9 3,818,671 + CCNA_03657 0.29 -0.2 3,818,744 - CCNA_03657 0.38 -0.5 3,818,790 - +2.8 3,818,893 - CCNA_03657 0.56 -0.6 3,818,926 - CCNA_03657 0.60 +1.2 3,818,936 + CCNA_03657 0.61 -0.6 3,818,945 + CCNA_03657 0.62 +0.5 3,818,953 + CCNA_03657 0.63 +0.5 3,818,958 - CCNA_03657 0.64 +1.6 3,819,011 - CCNA_03657 0.70 -0.8 3,819,019 - CCNA_03657 0.71 +1.4 3,819,078 - CCNA_03657 0.78 -1.8 3,819,092 - CCNA_03657 0.80 -2.0 3,819,108 - CCNA_03657 0.82 -1.6 3,819,255 - +1.4 3,819,276 - -0.1 3,819,308 - +1.3 3,819,347 + -0.6 3,819,355 - +1.5 3,819,361 - +1.7 3,819,371 - -0.5 3,819,391 - -1.4 3,819,402 - CCNA_03658 0.11 +0.3
Or see this region's nucleotide sequence