Experiment: PYE with Carbenicillin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03513 and CCNA_03514 are separated by 69 nucleotides CCNA_03514 and CCNA_03515 overlap by 23 nucleotides CCNA_03515 and CCNA_03516 overlap by 4 nucleotides
CCNA_03513: CCNA_03513 - cytochrome c oxidase subunit III coxC, at 3,670,974 to 3,671,846
_03513
CCNA_03514: CCNA_03514 - cytochrome c oxidase assembly protein ctaG, at 3,671,916 to 3,672,566
_03514
CCNA_03515: CCNA_03515 - hypothetical protein, at 3,672,544 to 3,672,705
_03515
CCNA_03516: CCNA_03516 - protoheme IX farnesyltransferase coxE, at 3,672,702 to 3,673,721
_03516
Position (kb)
3671
3672
3673 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3670.940 kb on + strand at 3670.958 kb on + strand at 3670.974 kb on - strand at 3671.133 kb on - strand, within CCNA_03513 at 3671.239 kb on + strand, within CCNA_03513 at 3671.345 kb on - strand, within CCNA_03513 at 3671.403 kb on - strand, within CCNA_03513 at 3671.403 kb on - strand, within CCNA_03513 at 3671.403 kb on - strand, within CCNA_03513 at 3671.403 kb on - strand, within CCNA_03513 at 3671.426 kb on - strand, within CCNA_03513 at 3671.435 kb on - strand, within CCNA_03513 at 3671.472 kb on - strand, within CCNA_03513 at 3671.489 kb on - strand, within CCNA_03513 at 3671.508 kb on - strand, within CCNA_03513 at 3671.535 kb on - strand, within CCNA_03513 at 3671.535 kb on - strand, within CCNA_03513 at 3671.563 kb on - strand, within CCNA_03513 at 3671.589 kb on - strand, within CCNA_03513 at 3671.673 kb on - strand, within CCNA_03513 at 3671.673 kb on - strand, within CCNA_03513 at 3671.739 kb on - strand, within CCNA_03513 at 3671.743 kb on + strand, within CCNA_03513 at 3671.858 kb on + strand at 3671.866 kb on - strand at 3671.866 kb on - strand at 3671.867 kb on - strand at 3671.902 kb on - strand at 3671.908 kb on + strand at 3671.915 kb on + strand at 3671.915 kb on + strand at 3671.923 kb on + strand at 3671.923 kb on + strand at 3671.924 kb on - strand at 3671.924 kb on - strand at 3671.933 kb on - strand at 3671.963 kb on + strand at 3672.060 kb on - strand, within CCNA_03514 at 3672.087 kb on + strand, within CCNA_03514 at 3672.121 kb on - strand, within CCNA_03514 at 3672.130 kb on - strand, within CCNA_03514 at 3672.177 kb on - strand, within CCNA_03514 at 3672.190 kb on + strand, within CCNA_03514 at 3672.190 kb on + strand, within CCNA_03514 at 3672.192 kb on + strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.239 kb on + strand, within CCNA_03514 at 3672.239 kb on + strand, within CCNA_03514 at 3672.247 kb on - strand, within CCNA_03514 at 3672.249 kb on + strand, within CCNA_03514 at 3672.257 kb on - strand, within CCNA_03514 at 3672.257 kb on - strand, within CCNA_03514 at 3672.304 kb on + strand, within CCNA_03514 at 3672.362 kb on - strand, within CCNA_03514 at 3672.366 kb on + strand, within CCNA_03514 at 3672.374 kb on - strand, within CCNA_03514 at 3672.374 kb on - strand, within CCNA_03514 at 3672.388 kb on - strand, within CCNA_03514 at 3672.413 kb on - strand, within CCNA_03514 at 3672.440 kb on - strand, within CCNA_03514 at 3672.444 kb on + strand, within CCNA_03514 at 3672.583 kb on - strand, within CCNA_03515 at 3672.621 kb on + strand, within CCNA_03515 at 3672.629 kb on - strand, within CCNA_03515 at 3672.629 kb on - strand, within CCNA_03515 at 3672.703 kb on - strand at 3672.747 kb on - strand at 3672.816 kb on - strand, within CCNA_03516 at 3672.849 kb on - strand, within CCNA_03516 at 3672.977 kb on - strand, within CCNA_03516 at 3673.018 kb on - strand, within CCNA_03516 at 3673.126 kb on - strand, within CCNA_03516 at 3673.128 kb on - strand, within CCNA_03516 at 3673.190 kb on - strand, within CCNA_03516 at 3673.491 kb on - strand, within CCNA_03516 at 3673.514 kb on + strand, within CCNA_03516
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml remove 3,670,940 + -0.1 3,670,958 + -0.3 3,670,974 - +1.9 3,671,133 - CCNA_03513 0.18 +2.4 3,671,239 + CCNA_03513 0.30 -2.8 3,671,345 - CCNA_03513 0.42 +0.3 3,671,403 - CCNA_03513 0.49 +1.7 3,671,403 - CCNA_03513 0.49 +2.4 3,671,403 - CCNA_03513 0.49 +2.8 3,671,403 - CCNA_03513 0.49 +1.8 3,671,426 - CCNA_03513 0.52 +2.0 3,671,435 - CCNA_03513 0.53 +2.7 3,671,472 - CCNA_03513 0.57 +1.2 3,671,489 - CCNA_03513 0.59 -1.1 3,671,508 - CCNA_03513 0.61 +2.4 3,671,535 - CCNA_03513 0.64 +2.4 3,671,535 - CCNA_03513 0.64 +2.6 3,671,563 - CCNA_03513 0.67 +1.6 3,671,589 - CCNA_03513 0.70 +1.2 3,671,673 - CCNA_03513 0.80 +1.2 3,671,673 - CCNA_03513 0.80 +1.4 3,671,739 - CCNA_03513 0.88 +2.1 3,671,743 + CCNA_03513 0.88 -2.0 3,671,858 + -0.8 3,671,866 - +2.1 3,671,866 - +1.9 3,671,867 - +2.0 3,671,902 - +3.7 3,671,908 + -2.2 3,671,915 + +0.3 3,671,915 + -0.5 3,671,923 + +0.5 3,671,923 + +1.4 3,671,924 - +1.6 3,671,924 - +2.7 3,671,933 - +1.8 3,671,963 + -1.4 3,672,060 - CCNA_03514 0.22 +2.5 3,672,087 + CCNA_03514 0.26 +0.9 3,672,121 - CCNA_03514 0.31 +3.0 3,672,130 - CCNA_03514 0.33 +3.3 3,672,177 - CCNA_03514 0.40 +2.1 3,672,190 + CCNA_03514 0.42 +0.5 3,672,190 + CCNA_03514 0.42 +0.4 3,672,192 + CCNA_03514 0.42 -1.5 3,672,198 - CCNA_03514 0.43 +2.1 3,672,198 - CCNA_03514 0.43 +4.4 3,672,198 - CCNA_03514 0.43 +2.4 3,672,198 - CCNA_03514 0.43 +1.8 3,672,198 - CCNA_03514 0.43 +1.9 3,672,198 - CCNA_03514 0.43 +2.3 3,672,198 - CCNA_03514 0.43 +2.4 3,672,198 - CCNA_03514 0.43 +2.3 3,672,198 - CCNA_03514 0.43 +2.3 3,672,239 + CCNA_03514 0.50 -1.1 3,672,239 + CCNA_03514 0.50 -0.4 3,672,247 - CCNA_03514 0.51 +3.1 3,672,249 + CCNA_03514 0.51 +0.4 3,672,257 - CCNA_03514 0.52 +2.6 3,672,257 - CCNA_03514 0.52 +2.6 3,672,304 + CCNA_03514 0.60 +0.2 3,672,362 - CCNA_03514 0.69 +4.0 3,672,366 + CCNA_03514 0.69 +0.4 3,672,374 - CCNA_03514 0.70 +2.0 3,672,374 - CCNA_03514 0.70 +2.1 3,672,388 - CCNA_03514 0.73 +2.0 3,672,413 - CCNA_03514 0.76 +2.4 3,672,440 - CCNA_03514 0.80 +1.7 3,672,444 + CCNA_03514 0.81 -1.5 3,672,583 - CCNA_03515 0.24 +1.7 3,672,621 + CCNA_03515 0.48 -0.4 3,672,629 - CCNA_03515 0.52 +1.8 3,672,629 - CCNA_03515 0.52 +1.4 3,672,703 - +1.5 3,672,747 - +2.0 3,672,816 - CCNA_03516 0.11 +2.2 3,672,849 - CCNA_03516 0.14 +1.6 3,672,977 - CCNA_03516 0.27 +0.6 3,673,018 - CCNA_03516 0.31 +1.1 3,673,126 - CCNA_03516 0.42 -0.1 3,673,128 - CCNA_03516 0.42 +2.0 3,673,190 - CCNA_03516 0.48 +1.6 3,673,491 - CCNA_03516 0.77 +1.4 3,673,514 + CCNA_03516 0.80 +0.4
Or see this region's nucleotide sequence