Experiment: PYE with Carbenicillin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02292 and CCNA_02293 overlap by 4 nucleotides CCNA_02293 and CCNA_02294 are separated by 0 nucleotides CCNA_02294 and CCNA_02295 overlap by 22 nucleotides CCNA_02295 and CCNA_02296 are separated by 9 nucleotides
CCNA_02292: CCNA_02292 - acetyltransferase, at 2,439,791 to 2,440,519
_02292
CCNA_02293: CCNA_02293 - thiol:disulfide interchange protein tlpA, at 2,440,516 to 2,441,148
_02293
CCNA_02294: CCNA_02294 - argininosuccinate lyase, at 2,441,149 to 2,442,567
_02294
CCNA_02295: CCNA_02295 - hypothetical protein, at 2,442,546 to 2,442,866
_02295
CCNA_02296: CCNA_02296 - diaminopimelate decarboxylase, at 2,442,876 to 2,444,141
_02296
Position (kb)
2441
2442
2443 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2440.218 kb on - strand, within CCNA_02292 at 2440.223 kb on - strand, within CCNA_02292 at 2440.233 kb on - strand, within CCNA_02292 at 2440.233 kb on - strand, within CCNA_02292 at 2440.233 kb on - strand, within CCNA_02292 at 2440.240 kb on + strand, within CCNA_02292 at 2440.240 kb on + strand, within CCNA_02292 at 2440.248 kb on - strand, within CCNA_02292 at 2440.248 kb on - strand, within CCNA_02292 at 2440.248 kb on - strand, within CCNA_02292 at 2440.248 kb on - strand, within CCNA_02292 at 2440.311 kb on - strand, within CCNA_02292 at 2440.330 kb on + strand, within CCNA_02292 at 2440.401 kb on + strand, within CCNA_02292 at 2440.448 kb on + strand at 2440.448 kb on + strand at 2440.453 kb on + strand at 2440.453 kb on + strand at 2440.456 kb on - strand at 2440.456 kb on - strand at 2440.461 kb on - strand at 2440.473 kb on + strand at 2440.473 kb on + strand at 2440.473 kb on + strand at 2440.481 kb on - strand at 2440.481 kb on - strand at 2440.481 kb on - strand at 2440.519 kb on + strand at 2440.578 kb on + strand at 2440.639 kb on - strand, within CCNA_02293 at 2440.639 kb on - strand, within CCNA_02293 at 2440.656 kb on + strand, within CCNA_02293 at 2440.658 kb on + strand, within CCNA_02293 at 2440.664 kb on - strand, within CCNA_02293 at 2440.668 kb on + strand, within CCNA_02293 at 2440.669 kb on - strand, within CCNA_02293 at 2440.676 kb on - strand, within CCNA_02293 at 2440.740 kb on - strand, within CCNA_02293 at 2440.796 kb on + strand, within CCNA_02293 at 2440.796 kb on + strand, within CCNA_02293 at 2440.804 kb on - strand, within CCNA_02293 at 2440.820 kb on - strand, within CCNA_02293 at 2440.826 kb on + strand, within CCNA_02293 at 2440.836 kb on + strand, within CCNA_02293 at 2440.836 kb on + strand, within CCNA_02293 at 2440.836 kb on + strand, within CCNA_02293 at 2440.858 kb on - strand, within CCNA_02293 at 2440.878 kb on + strand, within CCNA_02293 at 2440.895 kb on + strand, within CCNA_02293 at 2440.943 kb on - strand, within CCNA_02293 at 2440.948 kb on - strand, within CCNA_02293 at 2441.008 kb on + strand, within CCNA_02293 at 2441.041 kb on + strand, within CCNA_02293 at 2441.041 kb on + strand, within CCNA_02293 at 2441.104 kb on - strand at 2442.561 kb on + strand at 2442.574 kb on - strand at 2442.674 kb on - strand, within CCNA_02295 at 2442.698 kb on - strand, within CCNA_02295 at 2442.705 kb on + strand, within CCNA_02295 at 2442.711 kb on + strand, within CCNA_02295 at 2442.715 kb on + strand, within CCNA_02295 at 2442.719 kb on - strand, within CCNA_02295 at 2442.719 kb on - strand, within CCNA_02295 at 2442.795 kb on + strand, within CCNA_02295 at 2442.800 kb on + strand, within CCNA_02295
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml remove 2,440,218 - CCNA_02292 0.59 +1.3 2,440,223 - CCNA_02292 0.59 -0.2 2,440,233 - CCNA_02292 0.61 +1.4 2,440,233 - CCNA_02292 0.61 +1.9 2,440,233 - CCNA_02292 0.61 -0.6 2,440,240 + CCNA_02292 0.62 -2.1 2,440,240 + CCNA_02292 0.62 -1.5 2,440,248 - CCNA_02292 0.63 +1.4 2,440,248 - CCNA_02292 0.63 +1.7 2,440,248 - CCNA_02292 0.63 -0.3 2,440,248 - CCNA_02292 0.63 +0.1 2,440,311 - CCNA_02292 0.71 +1.0 2,440,330 + CCNA_02292 0.74 +0.1 2,440,401 + CCNA_02292 0.84 -0.2 2,440,448 + -1.5 2,440,448 + -0.2 2,440,453 + -0.4 2,440,453 + -0.6 2,440,456 - +0.8 2,440,456 - +0.6 2,440,461 - -0.7 2,440,473 + -0.5 2,440,473 + -0.9 2,440,473 + -2.0 2,440,481 - +1.2 2,440,481 - +0.7 2,440,481 - +0.2 2,440,519 + -1.9 2,440,578 + +0.1 2,440,639 - CCNA_02293 0.19 -0.1 2,440,639 - CCNA_02293 0.19 +1.1 2,440,656 + CCNA_02293 0.22 -1.3 2,440,658 + CCNA_02293 0.22 -0.8 2,440,664 - CCNA_02293 0.23 -0.8 2,440,668 + CCNA_02293 0.24 -0.9 2,440,669 - CCNA_02293 0.24 -1.4 2,440,676 - CCNA_02293 0.25 +1.4 2,440,740 - CCNA_02293 0.35 +0.9 2,440,796 + CCNA_02293 0.44 -2.3 2,440,796 + CCNA_02293 0.44 +0.9 2,440,804 - CCNA_02293 0.45 +0.7 2,440,820 - CCNA_02293 0.48 -0.1 2,440,826 + CCNA_02293 0.49 +0.1 2,440,836 + CCNA_02293 0.51 +1.2 2,440,836 + CCNA_02293 0.51 -0.0 2,440,836 + CCNA_02293 0.51 +0.3 2,440,858 - CCNA_02293 0.54 +0.8 2,440,878 + CCNA_02293 0.57 +0.1 2,440,895 + CCNA_02293 0.60 +1.4 2,440,943 - CCNA_02293 0.67 +0.7 2,440,948 - CCNA_02293 0.68 -0.3 2,441,008 + CCNA_02293 0.78 -0.3 2,441,041 + CCNA_02293 0.83 -1.2 2,441,041 + CCNA_02293 0.83 -1.7 2,441,104 - +1.4 2,442,561 + +0.2 2,442,574 - +1.7 2,442,674 - CCNA_02295 0.40 -1.5 2,442,698 - CCNA_02295 0.47 +0.4 2,442,705 + CCNA_02295 0.50 +0.4 2,442,711 + CCNA_02295 0.51 +3.4 2,442,715 + CCNA_02295 0.53 +0.4 2,442,719 - CCNA_02295 0.54 -1.4 2,442,719 - CCNA_02295 0.54 -0.6 2,442,795 + CCNA_02295 0.78 +0.7 2,442,800 + CCNA_02295 0.79 -0.6
Or see this region's nucleotide sequence