Experiment: PYE with Carbenicillin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02045 and CCNA_02046 are separated by 236 nucleotides CCNA_02046 and CCNA_02047 are separated by 43 nucleotides CCNA_02047 and CCNA_02048 are separated by 294 nucleotides
CCNA_02045: CCNA_02045 - acetyl-coenzyme A synthetase, at 2,190,729 to 2,192,279
_02045
CCNA_02046: CCNA_02046 - nitrogen regulatory protein P-II, at 2,192,516 to 2,192,854
_02046
CCNA_02047: CCNA_02047 - glutamine synthetase, at 2,192,898 to 2,194,307
_02047
CCNA_02048: CCNA_02048 - TonB-dependent receptor, at 2,194,602 to 2,196,782
_02048
Position (kb)
2192
2193
2194
2195 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2191.915 kb on - strand, within CCNA_02045 at 2191.915 kb on - strand, within CCNA_02045 at 2191.917 kb on + strand, within CCNA_02045 at 2191.917 kb on + strand, within CCNA_02045 at 2191.963 kb on - strand, within CCNA_02045 at 2191.963 kb on - strand, within CCNA_02045 at 2191.990 kb on + strand, within CCNA_02045 at 2191.998 kb on - strand, within CCNA_02045 at 2192.008 kb on + strand, within CCNA_02045 at 2192.016 kb on - strand, within CCNA_02045 at 2192.016 kb on - strand, within CCNA_02045 at 2192.022 kb on - strand, within CCNA_02045 at 2192.040 kb on + strand, within CCNA_02045 at 2192.089 kb on - strand, within CCNA_02045 at 2192.139 kb on - strand at 2192.139 kb on - strand at 2192.139 kb on - strand at 2192.181 kb on - strand at 2192.239 kb on - strand at 2192.249 kb on - strand at 2192.330 kb on - strand at 2192.342 kb on + strand at 2192.342 kb on + strand at 2192.408 kb on - strand at 2192.436 kb on + strand at 2192.438 kb on + strand at 2192.438 kb on + strand at 2192.446 kb on + strand at 2192.456 kb on + strand at 2192.464 kb on - strand at 2192.500 kb on + strand at 2192.640 kb on + strand, within CCNA_02046 at 2192.895 kb on + strand at 2194.303 kb on + strand at 2194.318 kb on - strand at 2194.318 kb on - strand at 2194.329 kb on + strand at 2194.351 kb on + strand at 2194.361 kb on + strand at 2194.454 kb on - strand at 2194.526 kb on - strand at 2194.528 kb on + strand at 2194.532 kb on - strand at 2194.557 kb on + strand at 2194.562 kb on + strand at 2194.564 kb on - strand at 2194.564 kb on - strand at 2194.564 kb on - strand at 2194.567 kb on + strand at 2194.570 kb on - strand at 2194.570 kb on - strand at 2194.599 kb on + strand at 2194.607 kb on - strand at 2194.607 kb on - strand at 2194.607 kb on - strand at 2194.607 kb on - strand at 2194.633 kb on + strand at 2194.664 kb on + strand at 2194.669 kb on + strand at 2194.672 kb on - strand at 2194.672 kb on - strand at 2194.672 kb on - strand at 2194.701 kb on - strand at 2194.714 kb on - strand at 2194.724 kb on + strand at 2194.730 kb on - strand at 2194.730 kb on - strand at 2194.732 kb on - strand at 2194.803 kb on + strand at 2194.825 kb on + strand, within CCNA_02048 at 2194.850 kb on + strand, within CCNA_02048 at 2194.916 kb on + strand, within CCNA_02048 at 2194.940 kb on - strand, within CCNA_02048 at 2194.985 kb on - strand, within CCNA_02048 at 2194.990 kb on - strand, within CCNA_02048 at 2194.992 kb on + strand, within CCNA_02048 at 2194.992 kb on + strand, within CCNA_02048 at 2194.992 kb on + strand, within CCNA_02048 at 2194.992 kb on + strand, within CCNA_02048 at 2195.012 kb on + strand, within CCNA_02048 at 2195.016 kb on + strand, within CCNA_02048 at 2195.036 kb on + strand, within CCNA_02048 at 2195.042 kb on - strand, within CCNA_02048 at 2195.046 kb on + strand, within CCNA_02048 at 2195.058 kb on + strand, within CCNA_02048 at 2195.083 kb on + strand, within CCNA_02048 at 2195.083 kb on + strand, within CCNA_02048 at 2195.093 kb on + strand, within CCNA_02048 at 2195.153 kb on + strand, within CCNA_02048 at 2195.209 kb on - strand, within CCNA_02048 at 2195.221 kb on + strand, within CCNA_02048 at 2195.229 kb on - strand, within CCNA_02048 at 2195.237 kb on + strand, within CCNA_02048 at 2195.261 kb on + strand, within CCNA_02048 at 2195.293 kb on + strand, within CCNA_02048 at 2195.293 kb on + strand, within CCNA_02048 at 2195.301 kb on - strand, within CCNA_02048
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml remove 2,191,915 - CCNA_02045 0.76 -2.2 2,191,915 - CCNA_02045 0.76 -1.1 2,191,917 + CCNA_02045 0.77 -1.3 2,191,917 + CCNA_02045 0.77 -0.5 2,191,963 - CCNA_02045 0.80 -1.7 2,191,963 - CCNA_02045 0.80 -1.7 2,191,990 + CCNA_02045 0.81 +1.4 2,191,998 - CCNA_02045 0.82 -0.9 2,192,008 + CCNA_02045 0.82 -1.8 2,192,016 - CCNA_02045 0.83 -1.2 2,192,016 - CCNA_02045 0.83 -1.3 2,192,022 - CCNA_02045 0.83 -1.1 2,192,040 + CCNA_02045 0.85 -0.3 2,192,089 - CCNA_02045 0.88 +0.7 2,192,139 - -0.9 2,192,139 - -1.1 2,192,139 - +0.7 2,192,181 - -1.4 2,192,239 - -1.2 2,192,249 - +1.4 2,192,330 - +2.2 2,192,342 + -0.5 2,192,342 + -1.0 2,192,408 - -0.1 2,192,436 + +0.5 2,192,438 + -0.6 2,192,438 + +0.9 2,192,446 + +2.0 2,192,456 + +1.3 2,192,464 - -0.4 2,192,500 + -1.7 2,192,640 + CCNA_02046 0.37 +2.9 2,192,895 + +2.5 2,194,303 + +2.5 2,194,318 - -1.2 2,194,318 - -0.5 2,194,329 + +2.1 2,194,351 + -2.6 2,194,361 + -0.6 2,194,454 - +0.0 2,194,526 - -0.3 2,194,528 + +1.5 2,194,532 - -0.8 2,194,557 + -0.3 2,194,562 + -1.1 2,194,564 - -0.8 2,194,564 - +0.0 2,194,564 - -1.2 2,194,567 + -0.9 2,194,570 - -0.6 2,194,570 - -0.6 2,194,599 + -0.6 2,194,607 - +0.3 2,194,607 - -0.7 2,194,607 - +0.2 2,194,607 - -0.7 2,194,633 + -1.1 2,194,664 + +0.4 2,194,669 + +0.8 2,194,672 - +0.2 2,194,672 - -1.9 2,194,672 - +0.5 2,194,701 - -1.9 2,194,714 - -0.5 2,194,724 + +0.1 2,194,730 - -1.4 2,194,730 - -0.4 2,194,732 - -0.6 2,194,803 + +0.2 2,194,825 + CCNA_02048 0.10 +0.7 2,194,850 + CCNA_02048 0.11 -1.3 2,194,916 + CCNA_02048 0.14 +2.7 2,194,940 - CCNA_02048 0.15 -1.0 2,194,985 - CCNA_02048 0.18 +0.5 2,194,990 - CCNA_02048 0.18 +1.2 2,194,992 + CCNA_02048 0.18 -0.8 2,194,992 + CCNA_02048 0.18 +0.6 2,194,992 + CCNA_02048 0.18 -0.6 2,194,992 + CCNA_02048 0.18 -0.3 2,195,012 + CCNA_02048 0.19 +0.6 2,195,016 + CCNA_02048 0.19 +0.2 2,195,036 + CCNA_02048 0.20 +0.9 2,195,042 - CCNA_02048 0.20 -2.5 2,195,046 + CCNA_02048 0.20 -1.2 2,195,058 + CCNA_02048 0.21 -1.0 2,195,083 + CCNA_02048 0.22 -0.2 2,195,083 + CCNA_02048 0.22 +0.4 2,195,093 + CCNA_02048 0.23 -0.1 2,195,153 + CCNA_02048 0.25 +0.3 2,195,209 - CCNA_02048 0.28 -0.1 2,195,221 + CCNA_02048 0.28 +0.6 2,195,229 - CCNA_02048 0.29 +0.3 2,195,237 + CCNA_02048 0.29 +0.1 2,195,261 + CCNA_02048 0.30 +3.1 2,195,293 + CCNA_02048 0.32 -1.8 2,195,293 + CCNA_02048 0.32 -1.0 2,195,301 - CCNA_02048 0.32 -0.7
Or see this region's nucleotide sequence