Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01615

Experiment: PYE with Carbenicillin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01613 and CCNA_01614 overlap by 4 nucleotidesCCNA_01614 and CCNA_01615 are separated by 4 nucleotidesCCNA_01615 and CCNA_01616 overlap by 4 nucleotides CCNA_01613: CCNA_01613 - rod shape-determining protein MreC, at 1,734,410 to 1,735,450 _01613 CCNA_01614: CCNA_01614 - hypothetical protein, at 1,735,447 to 1,735,962 _01614 CCNA_01615: CCNA_01615 - cell elongation specific D,D-transpeptidase, at 1,735,967 to 1,737,985 _01615 CCNA_01616: CCNA_01616 - rod shape-determining protein RodA, at 1,737,982 to 1,739,139 _01616 Position (kb) 1735 1736 1737 1738Strain fitness (log2 ratio) -1 0 1 2 3 4at 1735.281 kb on + strand, within CCNA_01613at 1735.432 kb on + strandat 1735.434 kb on - strandat 1735.441 kb on + strandat 1735.902 kb on + strand, within CCNA_01614at 1735.953 kb on + strandat 1737.826 kb on + strandat 1737.849 kb on - strandat 1737.955 kb on + strandat 1737.963 kb on + strandat 1737.979 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml
remove
1,735,281 + CCNA_01613 0.84 +1.7
1,735,432 + -1.0
1,735,434 - +2.2
1,735,441 + +0.7
1,735,902 + CCNA_01614 0.88 +0.5
1,735,953 + +4.1
1,737,826 + -0.9
1,737,849 - +0.1
1,737,955 + -0.8
1,737,963 + +0.0
1,737,979 + +0.5

Or see this region's nucleotide sequence