Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00818

Experiment: PYE with Carbenicillin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00817 and CCNA_00818 are separated by 160 nucleotidesCCNA_00818 and CCNA_00820 are separated by 55 nucleotides CCNA_00817: CCNA_00817 - L-sorbosone dehydrogenase, at 879,956 to 881,284 _00817 CCNA_00818: CCNA_00818 - glutathione S-transferase, at 881,445 to 882,167 _00818 CCNA_00820: CCNA_00820 - 3-ketoacyl-CoA thiolase, at 882,223 to 883,395 _00820 Position (kb) 881 882 883Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 880.460 kb on - strand, within CCNA_00817at 880.460 kb on - strand, within CCNA_00817at 880.460 kb on - strand, within CCNA_00817at 880.487 kb on + strand, within CCNA_00817at 880.494 kb on + strand, within CCNA_00817at 880.494 kb on + strand, within CCNA_00817at 880.494 kb on + strand, within CCNA_00817at 880.499 kb on + strand, within CCNA_00817at 880.499 kb on + strand, within CCNA_00817at 880.502 kb on - strand, within CCNA_00817at 880.502 kb on - strand, within CCNA_00817at 880.504 kb on + strand, within CCNA_00817at 880.512 kb on - strand, within CCNA_00817at 880.535 kb on + strand, within CCNA_00817at 880.540 kb on + strand, within CCNA_00817at 880.545 kb on + strand, within CCNA_00817at 880.553 kb on - strand, within CCNA_00817at 880.577 kb on - strand, within CCNA_00817at 880.577 kb on - strand, within CCNA_00817at 880.577 kb on - strand, within CCNA_00817at 880.628 kb on - strand, within CCNA_00817at 880.633 kb on - strand, within CCNA_00817at 880.702 kb on - strand, within CCNA_00817at 880.711 kb on + strand, within CCNA_00817at 880.726 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.748 kb on - strand, within CCNA_00817at 880.748 kb on - strand, within CCNA_00817at 880.793 kb on + strand, within CCNA_00817at 880.793 kb on + strand, within CCNA_00817at 880.793 kb on + strand, within CCNA_00817at 880.825 kb on - strand, within CCNA_00817at 880.839 kb on + strand, within CCNA_00817at 880.847 kb on - strand, within CCNA_00817at 880.894 kb on - strand, within CCNA_00817at 880.894 kb on - strand, within CCNA_00817at 880.897 kb on + strand, within CCNA_00817at 880.906 kb on + strand, within CCNA_00817at 880.909 kb on - strand, within CCNA_00817at 880.956 kb on + strand, within CCNA_00817at 880.956 kb on + strand, within CCNA_00817at 880.956 kb on + strand, within CCNA_00817at 880.962 kb on + strand, within CCNA_00817at 880.964 kb on - strand, within CCNA_00817at 880.964 kb on - strand, within CCNA_00817at 880.988 kb on - strand, within CCNA_00817at 880.997 kb on + strand, within CCNA_00817at 881.010 kb on + strand, within CCNA_00817at 881.010 kb on + strand, within CCNA_00817at 881.055 kb on + strand, within CCNA_00817at 881.068 kb on + strand, within CCNA_00817at 881.076 kb on - strand, within CCNA_00817at 881.092 kb on + strand, within CCNA_00817at 881.108 kb on - strand, within CCNA_00817at 881.111 kb on + strand, within CCNA_00817at 881.119 kb on - strand, within CCNA_00817at 881.126 kb on + strand, within CCNA_00817at 881.129 kb on - strand, within CCNA_00817at 881.165 kb on - strandat 881.173 kb on + strandat 881.188 kb on - strandat 881.214 kb on - strandat 881.235 kb on + strandat 881.280 kb on - strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.306 kb on - strandat 881.306 kb on - strandat 881.349 kb on + strandat 881.368 kb on - strandat 881.373 kb on - strandat 881.387 kb on + strandat 881.419 kb on - strandat 881.452 kb on - strandat 881.452 kb on - strandat 881.452 kb on - strandat 881.452 kb on - strandat 881.469 kb on - strandat 881.495 kb on - strandat 881.573 kb on + strand, within CCNA_00818at 881.579 kb on + strand, within CCNA_00818at 881.581 kb on + strand, within CCNA_00818at 881.587 kb on - strand, within CCNA_00818at 881.589 kb on - strand, within CCNA_00818at 881.589 kb on - strand, within CCNA_00818at 881.605 kb on + strand, within CCNA_00818at 881.640 kb on + strand, within CCNA_00818at 881.640 kb on + strand, within CCNA_00818at 881.640 kb on + strand, within CCNA_00818at 881.640 kb on + strand, within CCNA_00818at 881.642 kb on + strand, within CCNA_00818at 881.648 kb on - strand, within CCNA_00818at 881.648 kb on - strand, within CCNA_00818at 881.649 kb on + strand, within CCNA_00818at 881.657 kb on - strand, within CCNA_00818at 881.747 kb on + strand, within CCNA_00818at 881.747 kb on + strand, within CCNA_00818at 881.747 kb on + strand, within CCNA_00818at 881.755 kb on - strand, within CCNA_00818at 881.755 kb on - strand, within CCNA_00818at 881.755 kb on - strand, within CCNA_00818at 881.755 kb on - strand, within CCNA_00818at 881.755 kb on - strand, within CCNA_00818at 881.755 kb on - strand, within CCNA_00818at 881.757 kb on - strand, within CCNA_00818at 881.766 kb on + strand, within CCNA_00818at 881.774 kb on - strand, within CCNA_00818at 881.774 kb on - strand, within CCNA_00818at 881.796 kb on + strand, within CCNA_00818at 881.804 kb on - strand, within CCNA_00818at 881.819 kb on + strand, within CCNA_00818at 881.820 kb on - strand, within CCNA_00818at 881.822 kb on + strand, within CCNA_00818at 881.822 kb on + strand, within CCNA_00818at 881.830 kb on - strand, within CCNA_00818at 881.841 kb on - strand, within CCNA_00818at 881.841 kb on - strand, within CCNA_00818at 881.841 kb on - strand, within CCNA_00818at 881.841 kb on - strand, within CCNA_00818at 881.841 kb on - strand, within CCNA_00818at 881.882 kb on - strand, within CCNA_00818at 881.926 kb on + strand, within CCNA_00818at 881.929 kb on + strand, within CCNA_00818at 881.931 kb on + strand, within CCNA_00818at 881.982 kb on + strand, within CCNA_00818at 881.982 kb on + strand, within CCNA_00818at 881.983 kb on + strand, within CCNA_00818at 881.983 kb on + strand, within CCNA_00818at 881.990 kb on + strand, within CCNA_00818at 881.990 kb on - strand, within CCNA_00818at 881.996 kb on + strand, within CCNA_00818at 881.998 kb on + strand, within CCNA_00818at 881.998 kb on - strand, within CCNA_00818at 882.004 kb on - strand, within CCNA_00818at 882.008 kb on + strand, within CCNA_00818at 882.011 kb on - strand, within CCNA_00818at 882.016 kb on - strand, within CCNA_00818at 882.058 kb on - strand, within CCNA_00818at 882.058 kb on - strand, within CCNA_00818at 882.086 kb on + strand, within CCNA_00818at 882.102 kb on - strandat 882.109 kb on + strandat 882.129 kb on + strandat 882.137 kb on - strandat 882.185 kb on + strandat 882.229 kb on - strandat 882.229 kb on - strandat 882.239 kb on + strandat 882.285 kb on - strandat 882.301 kb on + strandat 882.303 kb on + strandat 882.309 kb on - strandat 882.311 kb on + strandat 882.311 kb on - strandat 882.311 kb on - strandat 882.334 kb on - strandat 882.357 kb on - strand, within CCNA_00820at 882.394 kb on - strand, within CCNA_00820at 882.397 kb on + strand, within CCNA_00820at 882.417 kb on + strand, within CCNA_00820at 882.425 kb on - strand, within CCNA_00820at 882.425 kb on - strand, within CCNA_00820at 882.458 kb on + strand, within CCNA_00820at 882.460 kb on - strand, within CCNA_00820at 882.507 kb on - strand, within CCNA_00820at 882.507 kb on - strand, within CCNA_00820at 882.557 kb on - strand, within CCNA_00820at 882.586 kb on - strand, within CCNA_00820at 882.596 kb on + strand, within CCNA_00820at 882.606 kb on - strand, within CCNA_00820at 882.658 kb on - strand, within CCNA_00820at 882.660 kb on + strand, within CCNA_00820at 882.663 kb on - strand, within CCNA_00820at 882.710 kb on - strand, within CCNA_00820at 882.763 kb on + strand, within CCNA_00820at 882.763 kb on + strand, within CCNA_00820at 882.776 kb on - strand, within CCNA_00820at 882.791 kb on + strand, within CCNA_00820at 882.834 kb on - strand, within CCNA_00820at 882.864 kb on + strand, within CCNA_00820at 882.867 kb on - strand, within CCNA_00820at 882.867 kb on - strand, within CCNA_00820at 882.867 kb on - strand, within CCNA_00820at 882.872 kb on - strand, within CCNA_00820at 882.880 kb on - strand, within CCNA_00820at 882.901 kb on - strand, within CCNA_00820at 882.960 kb on + strand, within CCNA_00820at 882.960 kb on + strand, within CCNA_00820at 882.968 kb on - strand, within CCNA_00820at 882.998 kb on + strand, within CCNA_00820at 883.003 kb on + strand, within CCNA_00820at 883.010 kb on + strand, within CCNA_00820at 883.010 kb on + strand, within CCNA_00820at 883.016 kb on - strand, within CCNA_00820at 883.018 kb on - strand, within CCNA_00820at 883.018 kb on - strand, within CCNA_00820at 883.036 kb on + strand, within CCNA_00820at 883.037 kb on - strand, within CCNA_00820at 883.132 kb on - strand, within CCNA_00820at 883.160 kb on + strand, within CCNA_00820at 883.160 kb on + strand, within CCNA_00820

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml
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880,460 - CCNA_00817 0.38 -0.2
880,460 - CCNA_00817 0.38 -1.3
880,460 - CCNA_00817 0.38 -0.7
880,487 + CCNA_00817 0.40 -0.6
880,494 + CCNA_00817 0.40 +0.6
880,494 + CCNA_00817 0.40 +1.1
880,494 + CCNA_00817 0.40 +0.7
880,499 + CCNA_00817 0.41 -1.1
880,499 + CCNA_00817 0.41 -0.3
880,502 - CCNA_00817 0.41 +1.9
880,502 - CCNA_00817 0.41 +0.1
880,504 + CCNA_00817 0.41 +0.9
880,512 - CCNA_00817 0.42 -1.7
880,535 + CCNA_00817 0.44 +2.6
880,540 + CCNA_00817 0.44 -2.6
880,545 + CCNA_00817 0.44 -0.1
880,553 - CCNA_00817 0.45 -1.6
880,577 - CCNA_00817 0.47 +0.2
880,577 - CCNA_00817 0.47 +0.4
880,577 - CCNA_00817 0.47 +1.8
880,628 - CCNA_00817 0.51 -0.5
880,633 - CCNA_00817 0.51 -0.4
880,702 - CCNA_00817 0.56 +1.5
880,711 + CCNA_00817 0.57 +0.8
880,726 + CCNA_00817 0.58 -1.5
880,740 + CCNA_00817 0.59 +0.3
880,740 + CCNA_00817 0.59 -1.0
880,740 + CCNA_00817 0.59 -2.2
880,740 + CCNA_00817 0.59 -1.1
880,740 + CCNA_00817 0.59 +2.0
880,740 + CCNA_00817 0.59 +1.4
880,740 + CCNA_00817 0.59 -1.2
880,740 + CCNA_00817 0.59 -1.6
880,740 + CCNA_00817 0.59 -1.3
880,740 + CCNA_00817 0.59 +1.0
880,748 - CCNA_00817 0.60 +0.7
880,748 - CCNA_00817 0.60 -1.1
880,793 + CCNA_00817 0.63 +2.4
880,793 + CCNA_00817 0.63 +0.6
880,793 + CCNA_00817 0.63 -0.8
880,825 - CCNA_00817 0.65 +3.0
880,839 + CCNA_00817 0.66 -0.8
880,847 - CCNA_00817 0.67 -0.6
880,894 - CCNA_00817 0.71 +0.1
880,894 - CCNA_00817 0.71 -0.6
880,897 + CCNA_00817 0.71 -1.0
880,906 + CCNA_00817 0.71 -1.1
880,909 - CCNA_00817 0.72 -0.5
880,956 + CCNA_00817 0.75 +0.1
880,956 + CCNA_00817 0.75 -0.2
880,956 + CCNA_00817 0.75 +0.6
880,962 + CCNA_00817 0.76 -0.6
880,964 - CCNA_00817 0.76 -1.3
880,964 - CCNA_00817 0.76 -0.5
880,988 - CCNA_00817 0.78 -0.8
880,997 + CCNA_00817 0.78 -1.1
881,010 + CCNA_00817 0.79 -1.7
881,010 + CCNA_00817 0.79 -1.3
881,055 + CCNA_00817 0.83 +0.4
881,068 + CCNA_00817 0.84 -1.6
881,076 - CCNA_00817 0.84 -0.7
881,092 + CCNA_00817 0.85 -1.0
881,108 - CCNA_00817 0.87 -0.9
881,111 + CCNA_00817 0.87 -0.2
881,119 - CCNA_00817 0.88 -1.4
881,126 + CCNA_00817 0.88 -1.2
881,129 - CCNA_00817 0.88 +0.3
881,165 - +0.1
881,173 + -1.8
881,188 - +0.2
881,214 - -2.5
881,235 + -1.3
881,280 - +0.2
881,298 + +1.7
881,298 + +1.8
881,298 + -1.4
881,298 + -1.1
881,298 + +3.4
881,306 - +0.4
881,306 - -0.4
881,349 + -1.5
881,368 - -2.1
881,373 - -2.4
881,387 + -0.3
881,419 - +0.2
881,452 - +0.7
881,452 - -1.3
881,452 - +0.4
881,452 - -0.8
881,469 - -1.2
881,495 - +0.0
881,573 + CCNA_00818 0.18 -0.9
881,579 + CCNA_00818 0.19 -2.2
881,581 + CCNA_00818 0.19 -1.1
881,587 - CCNA_00818 0.20 +0.8
881,589 - CCNA_00818 0.20 -0.3
881,589 - CCNA_00818 0.20 -2.1
881,605 + CCNA_00818 0.22 -0.1
881,640 + CCNA_00818 0.27 -2.4
881,640 + CCNA_00818 0.27 -0.9
881,640 + CCNA_00818 0.27 -0.2
881,640 + CCNA_00818 0.27 +0.2
881,642 + CCNA_00818 0.27 -0.4
881,648 - CCNA_00818 0.28 -1.7
881,648 - CCNA_00818 0.28 -1.5
881,649 + CCNA_00818 0.28 -2.4
881,657 - CCNA_00818 0.29 -0.7
881,747 + CCNA_00818 0.42 -1.2
881,747 + CCNA_00818 0.42 -1.5
881,747 + CCNA_00818 0.42 -2.4
881,755 - CCNA_00818 0.43 -0.5
881,755 - CCNA_00818 0.43 -1.2
881,755 - CCNA_00818 0.43 -0.6
881,755 - CCNA_00818 0.43 -1.1
881,755 - CCNA_00818 0.43 -0.1
881,755 - CCNA_00818 0.43 -1.4
881,757 - CCNA_00818 0.43 +2.0
881,766 + CCNA_00818 0.44 +0.2
881,774 - CCNA_00818 0.46 -1.5
881,774 - CCNA_00818 0.46 -1.0
881,796 + CCNA_00818 0.49 +0.4
881,804 - CCNA_00818 0.50 +2.2
881,819 + CCNA_00818 0.52 -0.2
881,820 - CCNA_00818 0.52 -2.2
881,822 + CCNA_00818 0.52 -2.5
881,822 + CCNA_00818 0.52 -1.9
881,830 - CCNA_00818 0.53 -0.4
881,841 - CCNA_00818 0.55 +1.0
881,841 - CCNA_00818 0.55 +0.7
881,841 - CCNA_00818 0.55 +1.4
881,841 - CCNA_00818 0.55 -2.3
881,841 - CCNA_00818 0.55 -1.1
881,882 - CCNA_00818 0.60 +0.7
881,926 + CCNA_00818 0.67 +1.2
881,929 + CCNA_00818 0.67 +2.1
881,931 + CCNA_00818 0.67 +1.1
881,982 + CCNA_00818 0.74 +2.4
881,982 + CCNA_00818 0.74 -1.5
881,983 + CCNA_00818 0.74 -0.9
881,983 + CCNA_00818 0.74 -1.2
881,990 + CCNA_00818 0.75 -0.9
881,990 - CCNA_00818 0.75 -0.2
881,996 + CCNA_00818 0.76 +1.2
881,998 + CCNA_00818 0.76 +0.5
881,998 - CCNA_00818 0.76 +0.2
882,004 - CCNA_00818 0.77 -3.3
882,008 + CCNA_00818 0.78 +0.0
882,011 - CCNA_00818 0.78 -1.4
882,016 - CCNA_00818 0.79 -1.0
882,058 - CCNA_00818 0.85 +0.1
882,058 - CCNA_00818 0.85 +2.2
882,086 + CCNA_00818 0.89 +0.4
882,102 - -1.2
882,109 + +2.1
882,129 + -0.8
882,137 - +0.8
882,185 + -0.4
882,229 - +1.7
882,229 - -0.6
882,239 + +0.9
882,285 - +0.5
882,301 + -0.6
882,303 + -0.2
882,309 - +1.2
882,311 + -2.4
882,311 - +0.3
882,311 - +2.3
882,334 - -0.8
882,357 - CCNA_00820 0.11 +0.4
882,394 - CCNA_00820 0.15 +0.2
882,397 + CCNA_00820 0.15 +1.1
882,417 + CCNA_00820 0.17 -1.6
882,425 - CCNA_00820 0.17 -2.2
882,425 - CCNA_00820 0.17 -0.6
882,458 + CCNA_00820 0.20 -1.0
882,460 - CCNA_00820 0.20 -0.0
882,507 - CCNA_00820 0.24 +0.1
882,507 - CCNA_00820 0.24 +0.4
882,557 - CCNA_00820 0.28 -0.1
882,586 - CCNA_00820 0.31 -0.1
882,596 + CCNA_00820 0.32 +1.0
882,606 - CCNA_00820 0.33 -0.5
882,658 - CCNA_00820 0.37 +0.2
882,660 + CCNA_00820 0.37 -0.9
882,663 - CCNA_00820 0.38 -0.4
882,710 - CCNA_00820 0.42 +1.1
882,763 + CCNA_00820 0.46 -1.9
882,763 + CCNA_00820 0.46 +0.1
882,776 - CCNA_00820 0.47 -2.6
882,791 + CCNA_00820 0.48 +0.2
882,834 - CCNA_00820 0.52 -0.3
882,864 + CCNA_00820 0.55 +0.1
882,867 - CCNA_00820 0.55 -0.5
882,867 - CCNA_00820 0.55 -1.5
882,867 - CCNA_00820 0.55 -1.6
882,872 - CCNA_00820 0.55 +1.4
882,880 - CCNA_00820 0.56 +0.6
882,901 - CCNA_00820 0.58 +0.3
882,960 + CCNA_00820 0.63 +1.0
882,960 + CCNA_00820 0.63 +2.1
882,968 - CCNA_00820 0.64 +0.1
882,998 + CCNA_00820 0.66 -1.8
883,003 + CCNA_00820 0.66 +1.8
883,010 + CCNA_00820 0.67 +2.8
883,010 + CCNA_00820 0.67 -0.0
883,016 - CCNA_00820 0.68 -0.1
883,018 - CCNA_00820 0.68 -2.0
883,018 - CCNA_00820 0.68 -1.8
883,036 + CCNA_00820 0.69 -1.4
883,037 - CCNA_00820 0.69 -0.6
883,132 - CCNA_00820 0.77 -0.2
883,160 + CCNA_00820 0.80 -0.4
883,160 + CCNA_00820 0.80 -1.2

Or see this region's nucleotide sequence