Experiment: PYE with Carbenicillin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00467 and CCNA_00468 are separated by 109 nucleotides CCNA_00468 and CCNA_00469 are separated by 297 nucleotides
CCNA_00467: CCNA_00467 - oligosaccharide translocase/flippase, at 480,439 to 481,710
_00467
CCNA_00468: CCNA_00468 - UDP glucuronic acid epimerase-related protein, at 481,820 to 481,933
_00468
CCNA_00469: CCNA_00469 - GT1-family glycosyltransferase, at 482,231 to 483,454
_00469
Position (kb) 481
482 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.666 kb on - strand at 481.672 kb on - strand at 481.689 kb on + strand at 481.691 kb on + strand at 481.704 kb on + strand at 481.704 kb on + strand at 481.704 kb on + strand at 481.704 kb on + strand at 481.712 kb on - strand at 481.712 kb on - strand at 481.712 kb on - strand at 481.712 kb on - strand at 481.712 kb on - strand at 481.712 kb on - strand at 481.722 kb on - strand at 481.733 kb on - strand at 481.793 kb on - strand at 481.796 kb on + strand at 481.796 kb on + strand at 481.804 kb on - strand at 481.804 kb on - strand at 481.817 kb on + strand at 481.825 kb on + strand at 481.825 kb on + strand at 481.833 kb on - strand, within CCNA_00468 at 481.842 kb on + strand, within CCNA_00468 at 481.842 kb on + strand, within CCNA_00468 at 481.842 kb on + strand, within CCNA_00468 at 481.850 kb on - strand, within CCNA_00468 at 481.850 kb on - strand, within CCNA_00468 at 481.865 kb on - strand, within CCNA_00468 at 481.879 kb on - strand, within CCNA_00468 at 481.880 kb on + strand, within CCNA_00468 at 481.880 kb on + strand, within CCNA_00468 at 481.881 kb on + strand, within CCNA_00468 at 481.896 kb on + strand, within CCNA_00468 at 481.930 kb on + strand at 481.934 kb on - strand at 481.944 kb on - strand at 481.945 kb on - strand at 481.996 kb on + strand at 482.004 kb on - strand at 482.004 kb on - strand at 482.004 kb on - strand at 482.013 kb on + strand at 482.042 kb on - strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.111 kb on - strand at 482.111 kb on - strand at 482.111 kb on - strand at 482.132 kb on + strand at 482.138 kb on - strand at 482.227 kb on - strand at 482.229 kb on + strand at 482.234 kb on + strand at 482.244 kb on + strand at 482.244 kb on + strand at 482.244 kb on + strand at 482.252 kb on - strand at 482.252 kb on - strand at 482.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml remove 481,664 + +1.0 481,664 + +0.6 481,664 + +0.8 481,664 + +0.3 481,664 + -1.1 481,664 + -0.1 481,664 + +0.9 481,664 + +0.2 481,664 + +0.8 481,666 - -0.8 481,672 - -0.1 481,689 + +0.3 481,691 + +0.7 481,704 + +0.7 481,704 + +0.8 481,704 + +0.8 481,704 + -0.1 481,712 - -0.5 481,712 - +0.4 481,712 - -0.4 481,712 - +0.8 481,712 - +1.2 481,712 - -0.5 481,722 - +0.1 481,733 - +0.9 481,793 - +0.2 481,796 + +0.4 481,796 + -0.2 481,804 - +1.3 481,804 - -1.0 481,817 + +1.2 481,825 + +1.1 481,825 + +0.9 481,833 - CCNA_00468 0.11 -0.1 481,842 + CCNA_00468 0.19 +2.6 481,842 + CCNA_00468 0.19 +1.5 481,842 + CCNA_00468 0.19 +3.6 481,850 - CCNA_00468 0.26 -0.5 481,850 - CCNA_00468 0.26 -0.1 481,865 - CCNA_00468 0.39 -0.1 481,879 - CCNA_00468 0.52 -0.3 481,880 + CCNA_00468 0.53 -0.0 481,880 + CCNA_00468 0.53 +0.7 481,881 + CCNA_00468 0.54 +0.1 481,896 + CCNA_00468 0.67 +1.6 481,930 + +0.3 481,934 - -0.4 481,944 - +0.3 481,945 - -2.2 481,996 + +1.7 482,004 - -0.3 482,004 - +2.3 482,004 - -0.1 482,013 + +2.2 482,042 - -0.4 482,103 + +0.7 482,103 + -0.1 482,103 + +0.5 482,103 + +0.4 482,103 + +0.0 482,103 + -0.1 482,103 + -0.4 482,103 + -1.4 482,103 + -0.6 482,111 - +0.8 482,111 - +0.5 482,111 - +1.8 482,132 + +0.8 482,138 - +3.0 482,227 - +3.4 482,229 + +0.5 482,234 + -0.5 482,244 + +0.2 482,244 + +1.3 482,244 + +0.1 482,252 - -3.0 482,252 - +0.4 482,252 - +0.7
Or see this region's nucleotide sequence