Experiment: PYE with Carbenicillin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00437 and CCNA_00438 are separated by 211 nucleotides CCNA_00438 and CCNA_00439 are separated by 296 nucleotides CCNA_00439 and CCNA_00440 overlap by 1 nucleotides CCNA_00440 and CCNA_00441 overlap by 4 nucleotides CCNA_00441 and CCNA_00442 are separated by 69 nucleotides
CCNA_00437: CCNA_00437 - methyl-accepting chemotaxis protein, at 443,064 to 444,677
_00437
CCNA_00438: CCNA_00438 - hypothetical protein, at 444,889 to 445,200
_00438
CCNA_00439: CCNA_00439 - methyl-accepting chemotaxis protein, at 445,497 to 447,518
_00439
CCNA_00440: CCNA_00440 - STAS domain protein, at 447,518 to 447,805
_00440
CCNA_00441: CCNA_00441 - chemotaxis receiver domain protein cheYI, at 447,802 to 448,167
_00441
CCNA_00442: CCNA_00442 - chemotaxis histidine kinase protein cheAI, at 448,237 to 450,525
_00442
Position (kb) 445
446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 444.503 kb on + strand, within CCNA_00437 at 444.511 kb on - strand, within CCNA_00437 at 444.513 kb on + strand, within CCNA_00437 at 444.520 kb on + strand at 444.530 kb on - strand at 444.541 kb on - strand at 444.686 kb on + strand at 444.694 kb on - strand at 444.708 kb on - strand at 444.708 kb on - strand at 444.710 kb on - strand at 444.715 kb on + strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.738 kb on + strand at 444.758 kb on + strand at 444.758 kb on + strand at 444.758 kb on + strand at 444.766 kb on + strand at 444.766 kb on - strand at 444.827 kb on - strand at 444.827 kb on - strand at 444.832 kb on - strand at 444.848 kb on - strand at 444.857 kb on - strand at 444.858 kb on - strand at 444.985 kb on + strand, within CCNA_00438 at 445.006 kb on + strand, within CCNA_00438 at 445.006 kb on + strand, within CCNA_00438 at 445.013 kb on + strand, within CCNA_00438 at 445.014 kb on - strand, within CCNA_00438 at 445.021 kb on - strand, within CCNA_00438 at 445.051 kb on - strand, within CCNA_00438 at 445.055 kb on + strand, within CCNA_00438 at 445.055 kb on + strand, within CCNA_00438 at 445.063 kb on - strand, within CCNA_00438 at 445.063 kb on - strand, within CCNA_00438 at 445.083 kb on - strand, within CCNA_00438 at 445.092 kb on + strand, within CCNA_00438 at 445.108 kb on - strand, within CCNA_00438 at 445.116 kb on - strand, within CCNA_00438 at 445.141 kb on + strand, within CCNA_00438 at 445.202 kb on - strand at 445.202 kb on - strand at 445.359 kb on - strand at 445.376 kb on - strand at 445.378 kb on + strand at 445.491 kb on + strand at 445.499 kb on - strand at 445.499 kb on - strand at 445.519 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.567 kb on + strand at 445.575 kb on - strand at 445.599 kb on - strand at 445.611 kb on + strand at 445.650 kb on + strand at 445.684 kb on - strand at 445.691 kb on - strand at 445.774 kb on + strand, within CCNA_00439 at 445.782 kb on - strand, within CCNA_00439 at 445.782 kb on - strand, within CCNA_00439 at 445.790 kb on + strand, within CCNA_00439 at 445.832 kb on + strand, within CCNA_00439 at 445.840 kb on - strand, within CCNA_00439 at 445.883 kb on + strand, within CCNA_00439 at 445.906 kb on + strand, within CCNA_00439 at 445.906 kb on + strand, within CCNA_00439 at 445.932 kb on - strand, within CCNA_00439 at 445.952 kb on - strand, within CCNA_00439 at 445.955 kb on + strand, within CCNA_00439 at 445.962 kb on + strand, within CCNA_00439 at 445.975 kb on - strand, within CCNA_00439 at 445.999 kb on + strand, within CCNA_00439 at 445.999 kb on + strand, within CCNA_00439 at 446.024 kb on - strand, within CCNA_00439 at 446.045 kb on + strand, within CCNA_00439 at 446.051 kb on + strand, within CCNA_00439 at 446.070 kb on - strand, within CCNA_00439 at 446.070 kb on - strand, within CCNA_00439 at 446.090 kb on + strand, within CCNA_00439 at 446.096 kb on + strand, within CCNA_00439 at 446.103 kb on + strand, within CCNA_00439 at 446.108 kb on + strand, within CCNA_00439 at 446.108 kb on + strand, within CCNA_00439 at 446.121 kb on - strand, within CCNA_00439 at 446.147 kb on + strand, within CCNA_00439 at 446.162 kb on + strand, within CCNA_00439 at 446.169 kb on + strand, within CCNA_00439 at 446.240 kb on + strand, within CCNA_00439 at 446.247 kb on + strand, within CCNA_00439 at 446.248 kb on - strand, within CCNA_00439 at 446.252 kb on + strand, within CCNA_00439 at 446.255 kb on - strand, within CCNA_00439 at 446.284 kb on + strand, within CCNA_00439 at 446.310 kb on + strand, within CCNA_00439 at 446.312 kb on + strand, within CCNA_00439 at 446.312 kb on + strand, within CCNA_00439 at 446.344 kb on - strand, within CCNA_00439 at 446.349 kb on - strand, within CCNA_00439 at 446.349 kb on - strand, within CCNA_00439 at 446.349 kb on - strand, within CCNA_00439 at 446.349 kb on - strand, within CCNA_00439 at 446.381 kb on + strand, within CCNA_00439 at 446.389 kb on - strand, within CCNA_00439 at 446.402 kb on + strand, within CCNA_00439 at 446.410 kb on - strand, within CCNA_00439 at 446.451 kb on + strand, within CCNA_00439 at 446.473 kb on + strand, within CCNA_00439 at 446.483 kb on + strand, within CCNA_00439 at 446.483 kb on + strand, within CCNA_00439 at 446.493 kb on + strand, within CCNA_00439 at 446.550 kb on + strand, within CCNA_00439 at 446.552 kb on + strand, within CCNA_00439 at 446.569 kb on - strand, within CCNA_00439 at 446.570 kb on - strand, within CCNA_00439 at 446.668 kb on + strand, within CCNA_00439 at 446.668 kb on + strand, within CCNA_00439 at 446.673 kb on + strand, within CCNA_00439 at 446.718 kb on - strand, within CCNA_00439 at 446.746 kb on - strand, within CCNA_00439 at 446.765 kb on - strand, within CCNA_00439 at 446.822 kb on - strand, within CCNA_00439 at 446.824 kb on + strand, within CCNA_00439 at 446.829 kb on + strand, within CCNA_00439 at 446.837 kb on - strand, within CCNA_00439 at 446.847 kb on + strand, within CCNA_00439 at 446.862 kb on + strand, within CCNA_00439 at 446.865 kb on - strand, within CCNA_00439 at 446.865 kb on - strand, within CCNA_00439 at 446.887 kb on - strand, within CCNA_00439 at 446.944 kb on - strand, within CCNA_00439 at 446.951 kb on + strand, within CCNA_00439 at 446.968 kb on - strand, within CCNA_00439 at 446.994 kb on + strand, within CCNA_00439 at 446.994 kb on + strand, within CCNA_00439 at 446.994 kb on + strand, within CCNA_00439 at 447.002 kb on - strand, within CCNA_00439 at 447.006 kb on + strand, within CCNA_00439 at 447.033 kb on - strand, within CCNA_00439 at 447.035 kb on + strand, within CCNA_00439 at 447.035 kb on + strand, within CCNA_00439 at 447.035 kb on + strand, within CCNA_00439 at 447.035 kb on + strand, within CCNA_00439 at 447.042 kb on + strand, within CCNA_00439 at 447.043 kb on - strand, within CCNA_00439 at 447.043 kb on - strand, within CCNA_00439 at 447.050 kb on + strand, within CCNA_00439 at 447.147 kb on + strand, within CCNA_00439 at 447.183 kb on - strand, within CCNA_00439 at 447.185 kb on + strand, within CCNA_00439 at 447.192 kb on + strand, within CCNA_00439 at 447.192 kb on + strand, within CCNA_00439 at 447.200 kb on - strand, within CCNA_00439 at 447.206 kb on + strand, within CCNA_00439 at 447.231 kb on - strand, within CCNA_00439 at 447.274 kb on - strand, within CCNA_00439 at 447.274 kb on - strand, within CCNA_00439 at 447.301 kb on - strand, within CCNA_00439 at 447.309 kb on - strand, within CCNA_00439 at 447.328 kb on + strand at 447.328 kb on + strand at 447.340 kb on + strand at 447.353 kb on + strand at 447.362 kb on - strand at 447.373 kb on + strand at 447.384 kb on + strand at 447.389 kb on + strand at 447.420 kb on + strand at 447.453 kb on + strand at 447.456 kb on - strand at 447.485 kb on + strand at 447.615 kb on - strand, within CCNA_00440 at 447.621 kb on - strand, within CCNA_00440 at 447.623 kb on + strand, within CCNA_00440 at 447.659 kb on + strand, within CCNA_00440 at 447.667 kb on - strand, within CCNA_00440 at 447.680 kb on + strand, within CCNA_00440 at 447.695 kb on + strand, within CCNA_00440 at 447.722 kb on + strand, within CCNA_00440 at 447.729 kb on + strand, within CCNA_00440 at 447.767 kb on - strand, within CCNA_00440 at 447.849 kb on - strand, within CCNA_00441 at 447.878 kb on + strand, within CCNA_00441 at 447.884 kb on + strand, within CCNA_00441 at 447.896 kb on - strand, within CCNA_00441 at 447.903 kb on - strand, within CCNA_00441 at 447.904 kb on + strand, within CCNA_00441 at 447.922 kb on + strand, within CCNA_00441 at 447.922 kb on - strand, within CCNA_00441 at 447.938 kb on + strand, within CCNA_00441 at 447.938 kb on + strand, within CCNA_00441 at 447.938 kb on + strand, within CCNA_00441 at 447.983 kb on + strand, within CCNA_00441 at 447.983 kb on + strand, within CCNA_00441 at 447.983 kb on + strand, within CCNA_00441 at 447.983 kb on + strand, within CCNA_00441 at 447.993 kb on + strand, within CCNA_00441 at 448.017 kb on + strand, within CCNA_00441 at 448.037 kb on + strand, within CCNA_00441 at 448.097 kb on + strand, within CCNA_00441 at 448.142 kb on + strand at 448.162 kb on + strand at 448.162 kb on + strand at 448.162 kb on + strand at 448.181 kb on + strand at 448.181 kb on + strand at 448.181 kb on + strand at 448.181 kb on + strand at 448.183 kb on + strand at 448.189 kb on - strand at 448.189 kb on - strand at 448.212 kb on - strand at 448.220 kb on + strand at 448.228 kb on - strand at 448.244 kb on + strand at 448.244 kb on + strand at 448.253 kb on + strand at 448.254 kb on + strand at 448.254 kb on + strand at 448.260 kb on + strand at 448.299 kb on + strand at 448.307 kb on - strand at 448.312 kb on + strand at 448.320 kb on - strand at 448.340 kb on + strand at 448.362 kb on + strand at 448.365 kb on - strand at 448.365 kb on - strand at 448.370 kb on - strand at 448.414 kb on - strand at 448.455 kb on - strand at 448.457 kb on + strand at 448.482 kb on - strand, within CCNA_00442
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml remove 444,503 + CCNA_00437 0.89 +0.3 444,511 - CCNA_00437 0.90 -1.6 444,513 + CCNA_00437 0.90 -1.5 444,520 + -2.3 444,530 - -0.9 444,541 - -0.7 444,686 + -0.8 444,694 - -1.2 444,708 - -0.1 444,708 - +0.0 444,710 - -0.1 444,715 + -0.0 444,723 - +0.7 444,723 - +2.3 444,738 + +0.9 444,758 + -1.8 444,758 + -1.7 444,758 + +1.2 444,766 + +2.6 444,766 - -0.6 444,827 - -0.6 444,827 - +0.3 444,832 - +0.2 444,848 - +1.4 444,857 - +0.8 444,858 - -0.5 444,985 + CCNA_00438 0.31 -0.4 445,006 + CCNA_00438 0.38 -0.6 445,006 + CCNA_00438 0.38 -0.7 445,013 + CCNA_00438 0.40 -2.0 445,014 - CCNA_00438 0.40 +2.0 445,021 - CCNA_00438 0.42 +1.9 445,051 - CCNA_00438 0.52 +1.8 445,055 + CCNA_00438 0.53 -0.4 445,055 + CCNA_00438 0.53 -1.1 445,063 - CCNA_00438 0.56 +0.8 445,063 - CCNA_00438 0.56 +2.9 445,083 - CCNA_00438 0.62 +2.2 445,092 + CCNA_00438 0.65 +1.2 445,108 - CCNA_00438 0.70 +3.3 445,116 - CCNA_00438 0.73 +2.1 445,141 + CCNA_00438 0.81 -1.3 445,202 - +0.5 445,202 - +0.5 445,359 - -1.7 445,376 - -2.0 445,378 + -1.5 445,491 + +0.8 445,499 - +0.4 445,499 - -1.9 445,519 + +1.0 445,526 + +0.4 445,526 + +0.6 445,526 + +0.4 445,526 + +1.1 445,526 + +1.7 445,534 - +0.7 445,534 - -0.2 445,534 - -1.4 445,534 - +0.3 445,534 - -0.3 445,567 + +1.3 445,575 - +0.4 445,599 - -1.0 445,611 + +0.8 445,650 + +1.6 445,684 - -0.5 445,691 - -0.3 445,774 + CCNA_00439 0.14 +0.2 445,782 - CCNA_00439 0.14 -0.1 445,782 - CCNA_00439 0.14 -0.2 445,790 + CCNA_00439 0.14 +2.2 445,832 + CCNA_00439 0.17 +1.4 445,840 - CCNA_00439 0.17 +0.0 445,883 + CCNA_00439 0.19 +2.0 445,906 + CCNA_00439 0.20 +4.0 445,906 + CCNA_00439 0.20 +0.4 445,932 - CCNA_00439 0.22 -0.5 445,952 - CCNA_00439 0.23 -1.1 445,955 + CCNA_00439 0.23 +1.9 445,962 + CCNA_00439 0.23 +2.1 445,975 - CCNA_00439 0.24 -0.3 445,999 + CCNA_00439 0.25 +1.9 445,999 + CCNA_00439 0.25 +1.5 446,024 - CCNA_00439 0.26 +1.1 446,045 + CCNA_00439 0.27 +2.2 446,051 + CCNA_00439 0.27 +1.3 446,070 - CCNA_00439 0.28 -0.3 446,070 - CCNA_00439 0.28 -2.2 446,090 + CCNA_00439 0.29 +1.0 446,096 + CCNA_00439 0.30 +2.2 446,103 + CCNA_00439 0.30 +1.9 446,108 + CCNA_00439 0.30 +1.4 446,108 + CCNA_00439 0.30 +1.4 446,121 - CCNA_00439 0.31 -2.0 446,147 + CCNA_00439 0.32 +1.4 446,162 + CCNA_00439 0.33 +1.1 446,169 + CCNA_00439 0.33 +1.4 446,240 + CCNA_00439 0.37 +1.5 446,247 + CCNA_00439 0.37 +2.0 446,248 - CCNA_00439 0.37 -0.3 446,252 + CCNA_00439 0.37 +2.1 446,255 - CCNA_00439 0.37 -1.8 446,284 + CCNA_00439 0.39 +1.5 446,310 + CCNA_00439 0.40 +1.2 446,312 + CCNA_00439 0.40 +1.9 446,312 + CCNA_00439 0.40 +2.0 446,344 - CCNA_00439 0.42 +0.7 446,349 - CCNA_00439 0.42 -0.9 446,349 - CCNA_00439 0.42 -1.0 446,349 - CCNA_00439 0.42 -0.9 446,349 - CCNA_00439 0.42 -0.2 446,381 + CCNA_00439 0.44 +1.3 446,389 - CCNA_00439 0.44 -0.1 446,402 + CCNA_00439 0.45 +0.9 446,410 - CCNA_00439 0.45 -0.3 446,451 + CCNA_00439 0.47 +1.8 446,473 + CCNA_00439 0.48 +2.1 446,483 + CCNA_00439 0.49 +2.1 446,483 + CCNA_00439 0.49 +2.3 446,493 + CCNA_00439 0.49 +2.1 446,550 + CCNA_00439 0.52 +1.5 446,552 + CCNA_00439 0.52 +1.8 446,569 - CCNA_00439 0.53 -0.9 446,570 - CCNA_00439 0.53 -1.1 446,668 + CCNA_00439 0.58 +1.7 446,668 + CCNA_00439 0.58 +1.9 446,673 + CCNA_00439 0.58 +1.7 446,718 - CCNA_00439 0.60 +0.5 446,746 - CCNA_00439 0.62 -0.5 446,765 - CCNA_00439 0.63 -0.6 446,822 - CCNA_00439 0.66 -0.7 446,824 + CCNA_00439 0.66 +2.9 446,829 + CCNA_00439 0.66 +1.8 446,837 - CCNA_00439 0.66 -0.5 446,847 + CCNA_00439 0.67 +2.6 446,862 + CCNA_00439 0.68 +1.6 446,865 - CCNA_00439 0.68 -0.8 446,865 - CCNA_00439 0.68 +0.2 446,887 - CCNA_00439 0.69 +1.5 446,944 - CCNA_00439 0.72 -2.2 446,951 + CCNA_00439 0.72 +1.4 446,968 - CCNA_00439 0.73 -1.2 446,994 + CCNA_00439 0.74 +1.1 446,994 + CCNA_00439 0.74 +2.1 446,994 + CCNA_00439 0.74 +1.5 447,002 - CCNA_00439 0.74 +0.5 447,006 + CCNA_00439 0.75 +2.0 447,033 - CCNA_00439 0.76 +1.4 447,035 + CCNA_00439 0.76 +1.7 447,035 + CCNA_00439 0.76 +2.0 447,035 + CCNA_00439 0.76 +1.9 447,035 + CCNA_00439 0.76 +1.3 447,042 + CCNA_00439 0.76 +1.5 447,043 - CCNA_00439 0.76 +0.4 447,043 - CCNA_00439 0.76 -2.6 447,050 + CCNA_00439 0.77 +1.3 447,147 + CCNA_00439 0.82 +1.8 447,183 - CCNA_00439 0.83 +0.4 447,185 + CCNA_00439 0.83 +2.3 447,192 + CCNA_00439 0.84 +2.0 447,192 + CCNA_00439 0.84 +2.9 447,200 - CCNA_00439 0.84 -0.2 447,206 + CCNA_00439 0.85 +2.5 447,231 - CCNA_00439 0.86 -1.2 447,274 - CCNA_00439 0.88 -0.3 447,274 - CCNA_00439 0.88 +0.1 447,301 - CCNA_00439 0.89 -2.2 447,309 - CCNA_00439 0.90 +0.0 447,328 + +1.5 447,328 + +1.4 447,340 + +1.7 447,353 + -0.9 447,362 - -1.1 447,373 + +1.3 447,384 + +2.1 447,389 + +2.0 447,420 + +1.8 447,453 + +2.0 447,456 - -0.1 447,485 + +1.3 447,615 - CCNA_00440 0.34 -0.3 447,621 - CCNA_00440 0.36 +0.1 447,623 + CCNA_00440 0.36 +1.4 447,659 + CCNA_00440 0.49 +2.0 447,667 - CCNA_00440 0.52 +0.4 447,680 + CCNA_00440 0.56 +1.7 447,695 + CCNA_00440 0.61 +1.5 447,722 + CCNA_00440 0.71 +2.4 447,729 + CCNA_00440 0.73 +1.7 447,767 - CCNA_00440 0.86 -1.6 447,849 - CCNA_00441 0.13 -1.9 447,878 + CCNA_00441 0.21 +2.1 447,884 + CCNA_00441 0.22 +1.7 447,896 - CCNA_00441 0.26 -2.5 447,903 - CCNA_00441 0.28 -0.5 447,904 + CCNA_00441 0.28 +2.1 447,922 + CCNA_00441 0.33 +2.1 447,922 - CCNA_00441 0.33 -1.7 447,938 + CCNA_00441 0.37 +2.0 447,938 + CCNA_00441 0.37 +1.8 447,938 + CCNA_00441 0.37 +2.2 447,983 + CCNA_00441 0.49 +1.9 447,983 + CCNA_00441 0.49 +2.7 447,983 + CCNA_00441 0.49 +2.3 447,983 + CCNA_00441 0.49 +2.3 447,993 + CCNA_00441 0.52 +2.0 448,017 + CCNA_00441 0.59 +2.0 448,037 + CCNA_00441 0.64 +2.3 448,097 + CCNA_00441 0.81 +2.0 448,142 + +2.2 448,162 + +2.0 448,162 + +1.9 448,162 + +1.6 448,181 + +2.6 448,181 + +2.2 448,181 + +2.4 448,181 + +1.9 448,183 + +1.5 448,189 - -2.0 448,189 - -0.6 448,212 - -0.7 448,220 + +2.3 448,228 - -0.6 448,244 + +2.5 448,244 + +2.1 448,253 + +2.4 448,254 + +2.1 448,254 + +2.3 448,260 + +2.3 448,299 + +1.9 448,307 - +0.0 448,312 + +1.7 448,320 - -0.8 448,340 + +1.6 448,362 + +1.6 448,365 - -2.9 448,365 - +0.0 448,370 - +0.5 448,414 - +0.0 448,455 - -1.2 448,457 + +2.0 448,482 - CCNA_00442 0.11 +0.0
Or see this region's nucleotide sequence