Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11925

Experiment: Recovery broth with Vancomycin from Streptomyces orientalis 5e-05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS11920 and BBR_RS11925 are separated by 36 nucleotidesBBR_RS11925 and BBR_RS20500 overlap by 4 nucleotidesBBR_RS20500 and BBR_RS11935 are separated by 353 nucleotides BBR_RS11920: BBR_RS11920 - IS256 family transposase, at 432,368 to 433,626 _RS11920 BBR_RS11925: BBR_RS11925 - hypothetical protein, at 433,663 to 433,875 _RS11925 BBR_RS20500: BBR_RS20500 - hypothetical protein, at 433,872 to 434,507 _RS20500 BBR_RS11935: BBR_RS11935 - hypothetical protein, at 434,861 to 436,234 _RS11935 Position (kb) 433 434Strain fitness (log2 ratio) -2 -1 0 1 2at 433.613 kb on + strandat 433.635 kb on + strandat 433.635 kb on + strandat 433.635 kb on + strandat 433.641 kb on + strandat 433.641 kb on + strandat 433.668 kb on - strandat 433.685 kb on + strand, within BBR_RS11925at 433.695 kb on + strand, within BBR_RS11925at 433.699 kb on - strand, within BBR_RS11925at 433.699 kb on - strand, within BBR_RS11925at 433.713 kb on + strand, within BBR_RS11925at 433.747 kb on + strand, within BBR_RS11925at 433.750 kb on - strand, within BBR_RS11925at 433.760 kb on - strand, within BBR_RS11925at 433.762 kb on + strand, within BBR_RS11925at 433.768 kb on - strand, within BBR_RS11925at 433.794 kb on - strand, within BBR_RS11925at 433.813 kb on + strand, within BBR_RS11925at 433.813 kb on + strand, within BBR_RS11925at 433.816 kb on - strand, within BBR_RS11925at 433.818 kb on + strand, within BBR_RS11925at 433.818 kb on + strand, within BBR_RS11925at 433.818 kb on + strand, within BBR_RS11925at 433.818 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.820 kb on + strand, within BBR_RS11925at 433.826 kb on - strand, within BBR_RS11925at 433.826 kb on - strand, within BBR_RS11925at 433.826 kb on - strand, within BBR_RS11925at 433.826 kb on - strand, within BBR_RS11925at 433.826 kb on - strand, within BBR_RS11925at 433.826 kb on - strand, within BBR_RS11925at 433.826 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.828 kb on - strand, within BBR_RS11925at 433.840 kb on - strand, within BBR_RS11925at 433.843 kb on + strand, within BBR_RS11925at 433.890 kb on - strandat 433.925 kb on - strandat 433.943 kb on - strand, within BBR_RS20500at 433.948 kb on + strand, within BBR_RS20500at 433.962 kb on + strand, within BBR_RS20500at 433.965 kb on - strand, within BBR_RS20500at 433.967 kb on + strand, within BBR_RS20500at 433.967 kb on + strand, within BBR_RS20500at 433.967 kb on + strand, within BBR_RS20500at 433.975 kb on - strand, within BBR_RS20500at 433.994 kb on - strand, within BBR_RS20500at 434.003 kb on + strand, within BBR_RS20500at 434.003 kb on + strand, within BBR_RS20500at 434.003 kb on + strand, within BBR_RS20500at 434.003 kb on + strand, within BBR_RS20500at 434.004 kb on + strand, within BBR_RS20500at 434.004 kb on + strand, within BBR_RS20500at 434.018 kb on - strand, within BBR_RS20500at 434.059 kb on - strand, within BBR_RS20500at 434.061 kb on + strand, within BBR_RS20500at 434.061 kb on + strand, within BBR_RS20500at 434.069 kb on - strand, within BBR_RS20500at 434.069 kb on - strand, within BBR_RS20500at 434.091 kb on + strand, within BBR_RS20500at 434.101 kb on + strand, within BBR_RS20500at 434.106 kb on + strand, within BBR_RS20500at 434.117 kb on + strand, within BBR_RS20500at 434.117 kb on + strand, within BBR_RS20500at 434.121 kb on - strand, within BBR_RS20500at 434.125 kb on + strand, within BBR_RS20500at 434.126 kb on - strand, within BBR_RS20500at 434.133 kb on - strand, within BBR_RS20500at 434.133 kb on - strand, within BBR_RS20500at 434.133 kb on - strand, within BBR_RS20500at 434.138 kb on - strand, within BBR_RS20500at 434.138 kb on - strand, within BBR_RS20500at 434.162 kb on + strand, within BBR_RS20500at 434.162 kb on - strand, within BBR_RS20500at 434.164 kb on + strand, within BBR_RS20500at 434.170 kb on - strand, within BBR_RS20500at 434.170 kb on - strand, within BBR_RS20500at 434.170 kb on - strand, within BBR_RS20500at 434.170 kb on - strand, within BBR_RS20500at 434.170 kb on - strand, within BBR_RS20500at 434.172 kb on - strand, within BBR_RS20500at 434.172 kb on - strand, within BBR_RS20500at 434.172 kb on - strand, within BBR_RS20500at 434.187 kb on + strand, within BBR_RS20500at 434.213 kb on - strand, within BBR_RS20500at 434.215 kb on + strand, within BBR_RS20500at 434.215 kb on + strand, within BBR_RS20500at 434.223 kb on - strand, within BBR_RS20500at 434.223 kb on - strand, within BBR_RS20500at 434.244 kb on - strand, within BBR_RS20500at 434.248 kb on + strand, within BBR_RS20500at 434.248 kb on + strand, within BBR_RS20500at 434.256 kb on + strand, within BBR_RS20500at 434.256 kb on - strand, within BBR_RS20500at 434.275 kb on + strand, within BBR_RS20500at 434.276 kb on + strand, within BBR_RS20500at 434.276 kb on + strand, within BBR_RS20500at 434.276 kb on + strand, within BBR_RS20500at 434.276 kb on + strand, within BBR_RS20500at 434.276 kb on + strand, within BBR_RS20500at 434.276 kb on + strand, within BBR_RS20500at 434.284 kb on - strand, within BBR_RS20500at 434.284 kb on - strand, within BBR_RS20500at 434.284 kb on - strand, within BBR_RS20500at 434.284 kb on - strand, within BBR_RS20500at 434.284 kb on - strand, within BBR_RS20500at 434.284 kb on - strand, within BBR_RS20500at 434.284 kb on - strand, within BBR_RS20500at 434.284 kb on - strand, within BBR_RS20500at 434.295 kb on + strand, within BBR_RS20500at 434.295 kb on + strand, within BBR_RS20500at 434.312 kb on + strand, within BBR_RS20500at 434.315 kb on + strand, within BBR_RS20500at 434.327 kb on + strand, within BBR_RS20500at 434.327 kb on + strand, within BBR_RS20500at 434.335 kb on - strand, within BBR_RS20500at 434.335 kb on - strand, within BBR_RS20500at 434.335 kb on - strand, within BBR_RS20500at 434.335 kb on - strand, within BBR_RS20500at 434.338 kb on - strand, within BBR_RS20500at 434.348 kb on - strand, within BBR_RS20500at 434.389 kb on + strand, within BBR_RS20500at 434.389 kb on + strand, within BBR_RS20500at 434.396 kb on + strand, within BBR_RS20500at 434.398 kb on + strand, within BBR_RS20500at 434.404 kb on - strand, within BBR_RS20500at 434.409 kb on - strand, within BBR_RS20500at 434.409 kb on - strand, within BBR_RS20500at 434.409 kb on - strand, within BBR_RS20500at 434.411 kb on + strand, within BBR_RS20500at 434.411 kb on + strand, within BBR_RS20500at 434.411 kb on + strand, within BBR_RS20500at 434.419 kb on - strand, within BBR_RS20500at 434.419 kb on - strand, within BBR_RS20500at 434.419 kb on - strand, within BBR_RS20500at 434.419 kb on - strand, within BBR_RS20500at 434.419 kb on - strand, within BBR_RS20500at 434.427 kb on - strand, within BBR_RS20500at 434.427 kb on - strand, within BBR_RS20500at 434.437 kb on - strand, within BBR_RS20500at 434.447 kb on + strandat 434.454 kb on + strandat 434.473 kb on - strandat 434.491 kb on - strandat 434.498 kb on - strandat 434.509 kb on + strandat 434.517 kb on - strandat 434.523 kb on + strandat 434.528 kb on + strandat 434.531 kb on - strandat 434.531 kb on - strandat 434.556 kb on - strandat 434.556 kb on - strandat 434.562 kb on - strandat 434.564 kb on + strandat 434.567 kb on - strandat 434.601 kb on - strandat 434.618 kb on - strandat 434.618 kb on - strandat 434.663 kb on - strandat 434.675 kb on - strandat 434.675 kb on - strandat 434.682 kb on + strandat 434.701 kb on + strandat 434.712 kb on - strandat 434.735 kb on + strandat 434.799 kb on - strandat 434.868 kb on + strandat 434.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Vancomycin from Streptomyces orientalis 5e-05 mM
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433,613 + +1.4
433,635 + -0.5
433,635 + +0.4
433,635 + +0.5
433,641 + +0.4
433,641 + -0.0
433,668 - +1.1
433,685 + BBR_RS11925 0.10 +0.8
433,695 + BBR_RS11925 0.15 -0.1
433,699 - BBR_RS11925 0.17 -0.2
433,699 - BBR_RS11925 0.17 +0.5
433,713 + BBR_RS11925 0.23 +0.0
433,747 + BBR_RS11925 0.39 -0.6
433,750 - BBR_RS11925 0.41 +0.6
433,760 - BBR_RS11925 0.46 +0.1
433,762 + BBR_RS11925 0.46 +1.5
433,768 - BBR_RS11925 0.49 -0.1
433,794 - BBR_RS11925 0.62 +0.1
433,813 + BBR_RS11925 0.70 -0.3
433,813 + BBR_RS11925 0.70 -0.0
433,816 - BBR_RS11925 0.72 +0.1
433,818 + BBR_RS11925 0.73 -0.4
433,818 + BBR_RS11925 0.73 -0.4
433,818 + BBR_RS11925 0.73 -0.3
433,818 + BBR_RS11925 0.73 +0.6
433,820 + BBR_RS11925 0.74 +0.6
433,820 + BBR_RS11925 0.74 -0.0
433,820 + BBR_RS11925 0.74 +0.2
433,820 + BBR_RS11925 0.74 +1.0
433,820 + BBR_RS11925 0.74 -0.9
433,820 + BBR_RS11925 0.74 -0.5
433,820 + BBR_RS11925 0.74 -0.8
433,820 + BBR_RS11925 0.74 -0.2
433,820 + BBR_RS11925 0.74 -0.1
433,820 + BBR_RS11925 0.74 +0.5
433,820 + BBR_RS11925 0.74 -1.1
433,820 + BBR_RS11925 0.74 -0.2
433,820 + BBR_RS11925 0.74 +0.2
433,820 + BBR_RS11925 0.74 +0.3
433,820 + BBR_RS11925 0.74 -0.6
433,820 + BBR_RS11925 0.74 +0.3
433,820 + BBR_RS11925 0.74 +0.5
433,820 + BBR_RS11925 0.74 -1.3
433,820 + BBR_RS11925 0.74 -1.1
433,820 + BBR_RS11925 0.74 +0.5
433,820 + BBR_RS11925 0.74 -0.1
433,820 + BBR_RS11925 0.74 -1.3
433,820 + BBR_RS11925 0.74 -0.1
433,820 + BBR_RS11925 0.74 -0.5
433,820 + BBR_RS11925 0.74 -0.1
433,820 + BBR_RS11925 0.74 +0.1
433,820 + BBR_RS11925 0.74 -0.4
433,820 + BBR_RS11925 0.74 -0.2
433,820 + BBR_RS11925 0.74 -0.2
433,820 + BBR_RS11925 0.74 +1.9
433,820 + BBR_RS11925 0.74 +0.3
433,820 + BBR_RS11925 0.74 +0.3
433,820 + BBR_RS11925 0.74 +1.0
433,820 + BBR_RS11925 0.74 -0.5
433,820 + BBR_RS11925 0.74 -0.3
433,820 + BBR_RS11925 0.74 +0.7
433,820 + BBR_RS11925 0.74 +0.3
433,826 - BBR_RS11925 0.77 +0.3
433,826 - BBR_RS11925 0.77 -0.5
433,826 - BBR_RS11925 0.77 -0.1
433,826 - BBR_RS11925 0.77 -0.2
433,826 - BBR_RS11925 0.77 -0.3
433,826 - BBR_RS11925 0.77 +0.2
433,826 - BBR_RS11925 0.77 +0.2
433,828 - BBR_RS11925 0.77 -0.3
433,828 - BBR_RS11925 0.77 +0.7
433,828 - BBR_RS11925 0.77 +0.0
433,828 - BBR_RS11925 0.77 +0.4
433,828 - BBR_RS11925 0.77 +0.2
433,828 - BBR_RS11925 0.77 -1.7
433,828 - BBR_RS11925 0.77 +0.1
433,828 - BBR_RS11925 0.77 +0.4
433,828 - BBR_RS11925 0.77 +1.2
433,828 - BBR_RS11925 0.77 +0.2
433,828 - BBR_RS11925 0.77 -0.2
433,828 - BBR_RS11925 0.77 +0.3
433,828 - BBR_RS11925 0.77 -2.2
433,828 - BBR_RS11925 0.77 +0.1
433,828 - BBR_RS11925 0.77 +0.0
433,828 - BBR_RS11925 0.77 -1.3
433,828 - BBR_RS11925 0.77 +0.8
433,828 - BBR_RS11925 0.77 +0.1
433,828 - BBR_RS11925 0.77 +1.0
433,828 - BBR_RS11925 0.77 -0.0
433,840 - BBR_RS11925 0.83 +0.2
433,843 + BBR_RS11925 0.85 +0.1
433,890 - -0.4
433,925 - -0.5
433,943 - BBR_RS20500 0.11 -0.5
433,948 + BBR_RS20500 0.12 -0.3
433,962 + BBR_RS20500 0.14 +0.5
433,965 - BBR_RS20500 0.15 +0.6
433,967 + BBR_RS20500 0.15 +0.4
433,967 + BBR_RS20500 0.15 +0.8
433,967 + BBR_RS20500 0.15 +0.2
433,975 - BBR_RS20500 0.16 +1.4
433,994 - BBR_RS20500 0.19 -0.5
434,003 + BBR_RS20500 0.21 -0.1
434,003 + BBR_RS20500 0.21 -0.2
434,003 + BBR_RS20500 0.21 +0.8
434,003 + BBR_RS20500 0.21 -0.6
434,004 + BBR_RS20500 0.21 +0.3
434,004 + BBR_RS20500 0.21 -0.6
434,018 - BBR_RS20500 0.23 -0.9
434,059 - BBR_RS20500 0.29 -0.5
434,061 + BBR_RS20500 0.30 +0.8
434,061 + BBR_RS20500 0.30 -0.3
434,069 - BBR_RS20500 0.31 +0.3
434,069 - BBR_RS20500 0.31 -0.3
434,091 + BBR_RS20500 0.34 +0.0
434,101 + BBR_RS20500 0.36 -0.1
434,106 + BBR_RS20500 0.37 -0.3
434,117 + BBR_RS20500 0.39 +0.3
434,117 + BBR_RS20500 0.39 -0.2
434,121 - BBR_RS20500 0.39 +1.8
434,125 + BBR_RS20500 0.40 +0.9
434,126 - BBR_RS20500 0.40 +0.5
434,133 - BBR_RS20500 0.41 -1.1
434,133 - BBR_RS20500 0.41 +1.2
434,133 - BBR_RS20500 0.41 +0.4
434,138 - BBR_RS20500 0.42 -0.4
434,138 - BBR_RS20500 0.42 +0.5
434,162 + BBR_RS20500 0.46 -0.5
434,162 - BBR_RS20500 0.46 -0.1
434,164 + BBR_RS20500 0.46 +0.1
434,170 - BBR_RS20500 0.47 +1.6
434,170 - BBR_RS20500 0.47 -0.0
434,170 - BBR_RS20500 0.47 +0.8
434,170 - BBR_RS20500 0.47 -0.6
434,170 - BBR_RS20500 0.47 -1.2
434,172 - BBR_RS20500 0.47 -0.8
434,172 - BBR_RS20500 0.47 -0.1
434,172 - BBR_RS20500 0.47 +0.5
434,187 + BBR_RS20500 0.50 -0.4
434,213 - BBR_RS20500 0.54 +0.0
434,215 + BBR_RS20500 0.54 +0.3
434,215 + BBR_RS20500 0.54 +1.1
434,223 - BBR_RS20500 0.55 -0.4
434,223 - BBR_RS20500 0.55 -0.4
434,244 - BBR_RS20500 0.58 +0.3
434,248 + BBR_RS20500 0.59 +0.2
434,248 + BBR_RS20500 0.59 +0.3
434,256 + BBR_RS20500 0.60 -0.1
434,256 - BBR_RS20500 0.60 -0.2
434,275 + BBR_RS20500 0.63 +0.1
434,276 + BBR_RS20500 0.64 -0.4
434,276 + BBR_RS20500 0.64 +0.5
434,276 + BBR_RS20500 0.64 -0.3
434,276 + BBR_RS20500 0.64 +0.1
434,276 + BBR_RS20500 0.64 -0.2
434,276 + BBR_RS20500 0.64 -0.1
434,284 - BBR_RS20500 0.65 -1.6
434,284 - BBR_RS20500 0.65 -1.0
434,284 - BBR_RS20500 0.65 +0.1
434,284 - BBR_RS20500 0.65 -0.1
434,284 - BBR_RS20500 0.65 +0.7
434,284 - BBR_RS20500 0.65 -0.1
434,284 - BBR_RS20500 0.65 +0.7
434,284 - BBR_RS20500 0.65 -0.4
434,295 + BBR_RS20500 0.67 -0.6
434,295 + BBR_RS20500 0.67 -0.0
434,312 + BBR_RS20500 0.69 +0.2
434,315 + BBR_RS20500 0.70 +0.5
434,327 + BBR_RS20500 0.72 -0.6
434,327 + BBR_RS20500 0.72 +0.1
434,335 - BBR_RS20500 0.73 -0.1
434,335 - BBR_RS20500 0.73 +0.2
434,335 - BBR_RS20500 0.73 -0.5
434,335 - BBR_RS20500 0.73 -0.4
434,338 - BBR_RS20500 0.73 -0.4
434,348 - BBR_RS20500 0.75 -0.8
434,389 + BBR_RS20500 0.81 +0.4
434,389 + BBR_RS20500 0.81 +1.7
434,396 + BBR_RS20500 0.82 -0.5
434,398 + BBR_RS20500 0.83 -0.5
434,404 - BBR_RS20500 0.84 +0.5
434,409 - BBR_RS20500 0.84 -0.2
434,409 - BBR_RS20500 0.84 -0.9
434,409 - BBR_RS20500 0.84 +0.3
434,411 + BBR_RS20500 0.85 -0.7
434,411 + BBR_RS20500 0.85 +0.6
434,411 + BBR_RS20500 0.85 -1.0
434,419 - BBR_RS20500 0.86 +1.2
434,419 - BBR_RS20500 0.86 +0.2
434,419 - BBR_RS20500 0.86 +0.6
434,419 - BBR_RS20500 0.86 -0.4
434,419 - BBR_RS20500 0.86 +0.2
434,427 - BBR_RS20500 0.87 -0.4
434,427 - BBR_RS20500 0.87 -0.4
434,437 - BBR_RS20500 0.89 +0.4
434,447 + -0.4
434,454 + +0.7
434,473 - -0.1
434,491 - -0.1
434,498 - -0.1
434,509 + -1.9
434,517 - -0.2
434,523 + +1.2
434,528 + +1.1
434,531 - +0.5
434,531 - +0.9
434,556 - -0.2
434,556 - -0.2
434,562 - -0.3
434,564 + +0.2
434,567 - -0.8
434,601 - -0.0
434,618 - -1.0
434,618 - +0.2
434,663 - +0.8
434,675 - -0.2
434,675 - -0.4
434,682 + -0.8
434,701 + +0.6
434,712 - +0.1
434,735 + +0.6
434,799 - -0.8
434,868 + +0.1
434,868 + +0.9

Or see this region's nucleotide sequence