Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33515

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS33510 and AZOBR_RS33515 are separated by 217 nucleotidesAZOBR_RS33515 and AZOBR_RS33520 are separated by 281 nucleotides AZOBR_RS33510: AZOBR_RS33510 - hypothetical protein, at 31,181 to 32,203 _RS33510 AZOBR_RS33515: AZOBR_RS33515 - hypothetical protein, at 32,421 to 34,088 _RS33515 AZOBR_RS33520: AZOBR_RS33520 - putative protease-like protein, at 34,370 to 36,061 _RS33520 Position (kb) 32 33 34 35Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 32.166 kb on + strandat 32.166 kb on + strandat 32.166 kb on + strandat 32.166 kb on + strandat 32.166 kb on + strandat 32.166 kb on + strandat 32.167 kb on - strandat 32.167 kb on - strandat 32.167 kb on - strandat 32.167 kb on - strandat 32.675 kb on - strand, within AZOBR_RS33515at 32.723 kb on - strand, within AZOBR_RS33515at 32.879 kb on - strand, within AZOBR_RS33515at 32.879 kb on - strand, within AZOBR_RS33515at 33.268 kb on + strand, within AZOBR_RS33515at 33.268 kb on + strand, within AZOBR_RS33515at 33.269 kb on - strand, within AZOBR_RS33515at 33.553 kb on + strand, within AZOBR_RS33515at 33.553 kb on + strand, within AZOBR_RS33515at 33.554 kb on - strand, within AZOBR_RS33515at 33.763 kb on + strand, within AZOBR_RS33515at 33.847 kb on + strand, within AZOBR_RS33515at 33.848 kb on - strand, within AZOBR_RS33515at 33.907 kb on + strand, within AZOBR_RS33515at 33.907 kb on + strand, within AZOBR_RS33515at 33.908 kb on - strand, within AZOBR_RS33515at 33.908 kb on - strand, within AZOBR_RS33515at 34.234 kb on + strandat 34.234 kb on + strandat 34.321 kb on + strandat 34.321 kb on + strandat 34.321 kb on + strandat 34.322 kb on - strandat 34.396 kb on - strandat 35.055 kb on + strand, within AZOBR_RS33520at 35.055 kb on + strand, within AZOBR_RS33520at 35.056 kb on - strand, within AZOBR_RS33520at 35.056 kb on - strand, within AZOBR_RS33520

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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32,166 + -1.7
32,166 + +0.3
32,166 + +0.5
32,166 + +0.1
32,166 + +0.6
32,166 + -0.2
32,167 - +0.5
32,167 - +1.5
32,167 - +0.2
32,167 - +1.4
32,675 - AZOBR_RS33515 0.15 +0.7
32,723 - AZOBR_RS33515 0.18 -4.0
32,879 - AZOBR_RS33515 0.27 +0.0
32,879 - AZOBR_RS33515 0.27 -1.3
33,268 + AZOBR_RS33515 0.51 -1.8
33,268 + AZOBR_RS33515 0.51 -1.9
33,269 - AZOBR_RS33515 0.51 -1.5
33,553 + AZOBR_RS33515 0.68 +0.1
33,553 + AZOBR_RS33515 0.68 -0.2
33,554 - AZOBR_RS33515 0.68 +0.6
33,763 + AZOBR_RS33515 0.80 +1.1
33,847 + AZOBR_RS33515 0.85 +0.4
33,848 - AZOBR_RS33515 0.86 +1.2
33,907 + AZOBR_RS33515 0.89 -0.8
33,907 + AZOBR_RS33515 0.89 +0.1
33,908 - AZOBR_RS33515 0.89 -0.1
33,908 - AZOBR_RS33515 0.89 -0.0
34,234 + -4.2
34,234 + +0.4
34,321 + +0.4
34,321 + +0.1
34,321 + -1.9
34,322 - +0.4
34,396 - -1.0
35,055 + AZOBR_RS33520 0.40 +1.0
35,055 + AZOBR_RS33520 0.40 +1.1
35,056 - AZOBR_RS33520 0.41 -0.3
35,056 - AZOBR_RS33520 0.41 +0.5

Or see this region's nucleotide sequence