Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS24390

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS24380 and AZOBR_RS24385 are separated by 56 nucleotidesAZOBR_RS24385 and AZOBR_RS24390 are separated by 50 nucleotidesAZOBR_RS24390 and AZOBR_RS24395 are separated by 796 nucleotides AZOBR_RS24380: AZOBR_RS24380 - hypothetical protein, at 519,259 to 520,200 _RS24380 AZOBR_RS24385: AZOBR_RS24385 - TPR repeat-containing protein, at 520,257 to 520,835 _RS24385 AZOBR_RS24390: AZOBR_RS24390 - hypothetical protein, at 520,886 to 522,190 _RS24390 AZOBR_RS24395: AZOBR_RS24395 - hypothetical protein, at 522,987 to 524,699 _RS24395 Position (kb) 520 521 522 523Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 520.314 kb on - strandat 520.450 kb on - strand, within AZOBR_RS24385at 520.644 kb on + strand, within AZOBR_RS24385at 520.644 kb on + strand, within AZOBR_RS24385at 520.782 kb on + strandat 521.150 kb on + strand, within AZOBR_RS24390at 521.150 kb on + strand, within AZOBR_RS24390at 521.150 kb on + strand, within AZOBR_RS24390at 521.150 kb on + strand, within AZOBR_RS24390at 521.151 kb on - strand, within AZOBR_RS24390at 521.180 kb on + strand, within AZOBR_RS24390at 521.180 kb on + strand, within AZOBR_RS24390at 521.493 kb on - strand, within AZOBR_RS24390at 521.493 kb on - strand, within AZOBR_RS24390at 521.567 kb on + strand, within AZOBR_RS24390at 521.567 kb on + strand, within AZOBR_RS24390at 521.567 kb on + strand, within AZOBR_RS24390at 521.568 kb on - strand, within AZOBR_RS24390at 521.568 kb on - strand, within AZOBR_RS24390at 521.568 kb on - strand, within AZOBR_RS24390at 521.568 kb on - strand, within AZOBR_RS24390at 521.568 kb on - strand, within AZOBR_RS24390at 521.568 kb on - strand, within AZOBR_RS24390at 521.568 kb on - strand, within AZOBR_RS24390at 521.568 kb on - strand, within AZOBR_RS24390at 521.568 kb on - strand, within AZOBR_RS24390at 521.568 kb on - strand, within AZOBR_RS24390at 521.568 kb on - strand, within AZOBR_RS24390at 521.875 kb on + strand, within AZOBR_RS24390at 521.875 kb on + strand, within AZOBR_RS24390at 521.875 kb on + strand, within AZOBR_RS24390at 521.875 kb on + strand, within AZOBR_RS24390at 521.875 kb on + strand, within AZOBR_RS24390at 521.876 kb on - strand, within AZOBR_RS24390at 521.876 kb on - strand, within AZOBR_RS24390at 521.876 kb on - strand, within AZOBR_RS24390at 521.919 kb on - strand, within AZOBR_RS24390at 521.919 kb on - strand, within AZOBR_RS24390at 522.054 kb on + strand, within AZOBR_RS24390at 522.055 kb on - strand, within AZOBR_RS24390at 522.420 kb on + strandat 522.421 kb on - strandat 522.427 kb on - strandat 522.498 kb on + strandat 522.499 kb on - strandat 522.499 kb on - strandat 522.617 kb on - strandat 522.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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520,314 - +0.1
520,450 - AZOBR_RS24385 0.33 -3.2
520,644 + AZOBR_RS24385 0.67 -2.8
520,644 + AZOBR_RS24385 0.67 +1.4
520,782 + -0.8
521,150 + AZOBR_RS24390 0.20 -0.9
521,150 + AZOBR_RS24390 0.20 +0.5
521,150 + AZOBR_RS24390 0.20 +1.1
521,150 + AZOBR_RS24390 0.20 -1.5
521,151 - AZOBR_RS24390 0.20 -0.0
521,180 + AZOBR_RS24390 0.23 -0.8
521,180 + AZOBR_RS24390 0.23 +1.8
521,493 - AZOBR_RS24390 0.47 +0.3
521,493 - AZOBR_RS24390 0.47 -2.1
521,567 + AZOBR_RS24390 0.52 +0.7
521,567 + AZOBR_RS24390 0.52 +0.7
521,567 + AZOBR_RS24390 0.52 -0.4
521,568 - AZOBR_RS24390 0.52 +1.0
521,568 - AZOBR_RS24390 0.52 +1.5
521,568 - AZOBR_RS24390 0.52 -0.3
521,568 - AZOBR_RS24390 0.52 -0.9
521,568 - AZOBR_RS24390 0.52 +0.3
521,568 - AZOBR_RS24390 0.52 +0.9
521,568 - AZOBR_RS24390 0.52 +0.7
521,568 - AZOBR_RS24390 0.52 +0.1
521,568 - AZOBR_RS24390 0.52 -0.1
521,568 - AZOBR_RS24390 0.52 +0.7
521,568 - AZOBR_RS24390 0.52 +0.5
521,875 + AZOBR_RS24390 0.76 +0.2
521,875 + AZOBR_RS24390 0.76 +1.2
521,875 + AZOBR_RS24390 0.76 +1.1
521,875 + AZOBR_RS24390 0.76 -0.8
521,875 + AZOBR_RS24390 0.76 +0.2
521,876 - AZOBR_RS24390 0.76 +0.3
521,876 - AZOBR_RS24390 0.76 -2.9
521,876 - AZOBR_RS24390 0.76 +2.4
521,919 - AZOBR_RS24390 0.79 -1.9
521,919 - AZOBR_RS24390 0.79 -0.3
522,054 + AZOBR_RS24390 0.90 -0.6
522,055 - AZOBR_RS24390 0.90 +0.8
522,420 + -1.4
522,421 - +0.5
522,427 - +0.4
522,498 + -0.6
522,499 - +1.1
522,499 - -2.5
522,617 - +0.4
522,915 - -0.5

Or see this region's nucleotide sequence