Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23215

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23205 and AZOBR_RS23210 are separated by 83 nucleotidesAZOBR_RS23210 and AZOBR_RS23215 are separated by 84 nucleotidesAZOBR_RS23215 and AZOBR_RS23220 are separated by 898 nucleotides AZOBR_RS23205: AZOBR_RS23205 - phosphoglycerate mutase, at 218,208 to 218,972 _RS23205 AZOBR_RS23210: AZOBR_RS23210 - hypothetical protein, at 219,056 to 219,445 _RS23210 AZOBR_RS23215: AZOBR_RS23215 - hypothetical protein, at 219,530 to 220,465 _RS23215 AZOBR_RS23220: AZOBR_RS23220 - beta-aspartyl peptidase, at 221,364 to 223,352 _RS23220 Position (kb) 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 218.555 kb on - strand, within AZOBR_RS23205at 218.893 kb on + strand, within AZOBR_RS23205at 219.220 kb on - strand, within AZOBR_RS23210at 219.553 kb on + strandat 219.554 kb on - strandat 219.561 kb on + strandat 220.740 kb on + strandat 220.740 kb on + strandat 220.740 kb on + strandat 220.740 kb on + strandat 220.741 kb on - strandat 220.741 kb on - strandat 220.741 kb on - strandat 220.741 kb on - strandat 220.741 kb on - strandat 220.741 kb on - strandat 220.918 kb on + strandat 220.962 kb on - strandat 220.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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218,555 - AZOBR_RS23205 0.45 -2.0
218,893 + AZOBR_RS23205 0.90 +0.1
219,220 - AZOBR_RS23210 0.42 +0.9
219,553 + -2.5
219,554 - +2.0
219,561 + -3.5
220,740 + -0.1
220,740 + +0.1
220,740 + -0.1
220,740 + +0.1
220,741 - -0.9
220,741 - +1.0
220,741 - -1.9
220,741 - +0.8
220,741 - -3.3
220,741 - +0.3
220,918 + +0.5
220,962 - -2.0
220,963 - -0.3

Or see this region's nucleotide sequence