Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22485

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22480 and AZOBR_RS22485 are separated by 79 nucleotidesAZOBR_RS22485 and AZOBR_RS22490 are separated by 357 nucleotides AZOBR_RS22480: AZOBR_RS22480 - tricarboxylate transporter, at 54,356 to 55,882 _RS22480 AZOBR_RS22485: AZOBR_RS22485 - hypothetical protein, at 55,962 to 56,666 _RS22485 AZOBR_RS22490: AZOBR_RS22490 - conserved hypothetical protein with CBS domain, at 57,024 to 57,710 _RS22490 Position (kb) 55 56 57Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 55.193 kb on + strand, within AZOBR_RS22480at 55.193 kb on + strand, within AZOBR_RS22480at 55.194 kb on - strand, within AZOBR_RS22480at 55.194 kb on - strand, within AZOBR_RS22480at 55.194 kb on - strand, within AZOBR_RS22480at 55.194 kb on - strand, within AZOBR_RS22480at 55.445 kb on + strandat 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.445 kb on + strand, within AZOBR_RS22480at 55.446 kb on - strand, within AZOBR_RS22480at 55.446 kb on - strand, within AZOBR_RS22480at 55.446 kb on - strand, within AZOBR_RS22480at 55.446 kb on - strand, within AZOBR_RS22480at 55.569 kb on - strand, within AZOBR_RS22480at 55.745 kb on - strandat 55.880 kb on + strandat 55.880 kb on + strandat 55.880 kb on + strandat 55.880 kb on + strandat 55.881 kb on - strandat 55.881 kb on - strandat 55.881 kb on - strandat 56.151 kb on + strand, within AZOBR_RS22485at 56.152 kb on - strand, within AZOBR_RS22485at 56.169 kb on + strand, within AZOBR_RS22485at 56.463 kb on + strand, within AZOBR_RS22485at 56.464 kb on - strand, within AZOBR_RS22485at 56.464 kb on - strand, within AZOBR_RS22485at 56.464 kb on - strand, within AZOBR_RS22485at 56.488 kb on - strand, within AZOBR_RS22485at 56.488 kb on - strand, within AZOBR_RS22485at 56.939 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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55,193 + AZOBR_RS22480 0.55 +1.0
55,193 + AZOBR_RS22480 0.55 +0.0
55,194 - AZOBR_RS22480 0.55 -1.0
55,194 - AZOBR_RS22480 0.55 -2.9
55,194 - AZOBR_RS22480 0.55 +0.1
55,194 - AZOBR_RS22480 0.55 +0.4
55,445 + +0.4
55,445 + AZOBR_RS22480 0.71 +3.3
55,445 + AZOBR_RS22480 0.71 -1.3
55,445 + AZOBR_RS22480 0.71 +0.7
55,445 + AZOBR_RS22480 0.71 -1.1
55,445 + AZOBR_RS22480 0.71 +0.0
55,445 + AZOBR_RS22480 0.71 +0.0
55,445 + AZOBR_RS22480 0.71 +2.0
55,445 + AZOBR_RS22480 0.71 -0.9
55,445 + AZOBR_RS22480 0.71 +0.5
55,445 + AZOBR_RS22480 0.71 -0.6
55,446 - AZOBR_RS22480 0.71 +0.1
55,446 - AZOBR_RS22480 0.71 -0.4
55,446 - AZOBR_RS22480 0.71 +1.2
55,446 - AZOBR_RS22480 0.71 +0.1
55,569 - AZOBR_RS22480 0.79 +1.7
55,745 - +1.0
55,880 + -0.1
55,880 + +0.9
55,880 + +1.6
55,880 + -0.4
55,881 - +0.8
55,881 - -2.1
55,881 - +1.2
56,151 + AZOBR_RS22485 0.27 +2.6
56,152 - AZOBR_RS22485 0.27 -0.1
56,169 + AZOBR_RS22485 0.29 +1.1
56,463 + AZOBR_RS22485 0.71 +0.9
56,464 - AZOBR_RS22485 0.71 +0.1
56,464 - AZOBR_RS22485 0.71 +0.6
56,464 - AZOBR_RS22485 0.71 -1.3
56,488 - AZOBR_RS22485 0.75 +0.9
56,488 - AZOBR_RS22485 0.75 +0.6
56,939 + -0.5

Or see this region's nucleotide sequence