Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21455

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21440 and AZOBR_RS21445 are separated by 164 nucleotidesAZOBR_RS21445 and AZOBR_RS21450 are separated by 67 nucleotidesAZOBR_RS21450 and AZOBR_RS21455 are separated by 199 nucleotidesAZOBR_RS21455 and AZOBR_RS21460 are separated by 484 nucleotidesAZOBR_RS21460 and AZOBR_RS21465 are separated by 102 nucleotides AZOBR_RS21440: AZOBR_RS21440 - hypothetical protein, at 1,589,232 to 1,590,893 _RS21440 AZOBR_RS21445: AZOBR_RS21445 - hypothetical protein, at 1,591,058 to 1,591,216 _RS21445 AZOBR_RS21450: AZOBR_RS21450 - hypothetical protein, at 1,591,284 to 1,591,520 _RS21450 AZOBR_RS21455: AZOBR_RS21455 - hypothetical protein, at 1,591,720 to 1,592,196 _RS21455 AZOBR_RS21460: AZOBR_RS21460 - hypothetical protein, at 1,592,681 to 1,593,031 _RS21460 AZOBR_RS21465: AZOBR_RS21465 - hemerythrin, at 1,593,134 to 1,593,556 _RS21465 Position (kb) 1591 1592 1593Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1591.531 kb on + strandat 1591.532 kb on - strandat 1591.613 kb on + strandat 1591.614 kb on - strandat 1591.646 kb on - strandat 1591.700 kb on + strandat 1591.804 kb on + strand, within AZOBR_RS21455at 1591.919 kb on + strand, within AZOBR_RS21455at 1591.920 kb on - strand, within AZOBR_RS21455at 1592.124 kb on + strand, within AZOBR_RS21455at 1592.125 kb on - strand, within AZOBR_RS21455at 1592.125 kb on - strand, within AZOBR_RS21455at 1592.141 kb on - strand, within AZOBR_RS21455at 1592.141 kb on - strand, within AZOBR_RS21455at 1592.194 kb on + strandat 1592.195 kb on - strandat 1592.810 kb on + strand, within AZOBR_RS21460at 1592.810 kb on + strand, within AZOBR_RS21460at 1592.811 kb on - strand, within AZOBR_RS21460at 1592.811 kb on - strand, within AZOBR_RS21460at 1592.980 kb on + strand, within AZOBR_RS21460at 1592.981 kb on - strand, within AZOBR_RS21460at 1592.981 kb on - strand, within AZOBR_RS21460at 1593.050 kb on + strandat 1593.051 kb on - strandat 1593.180 kb on + strand, within AZOBR_RS21465at 1593.180 kb on + strand, within AZOBR_RS21465

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,591,531 + -1.1
1,591,532 - -0.0
1,591,613 + -1.7
1,591,614 - +0.3
1,591,646 - +0.8
1,591,700 + -0.1
1,591,804 + AZOBR_RS21455 0.18 +0.4
1,591,919 + AZOBR_RS21455 0.42 +3.2
1,591,920 - AZOBR_RS21455 0.42 +1.8
1,592,124 + AZOBR_RS21455 0.85 -0.9
1,592,125 - AZOBR_RS21455 0.85 +0.3
1,592,125 - AZOBR_RS21455 0.85 +0.3
1,592,141 - AZOBR_RS21455 0.88 -2.1
1,592,141 - AZOBR_RS21455 0.88 +1.2
1,592,194 + +0.3
1,592,195 - +0.6
1,592,810 + AZOBR_RS21460 0.37 -2.3
1,592,810 + AZOBR_RS21460 0.37 +0.1
1,592,811 - AZOBR_RS21460 0.37 +0.6
1,592,811 - AZOBR_RS21460 0.37 +1.1
1,592,980 + AZOBR_RS21460 0.85 -0.8
1,592,981 - AZOBR_RS21460 0.85 +1.2
1,592,981 - AZOBR_RS21460 0.85 -0.4
1,593,050 + -0.1
1,593,051 - -0.1
1,593,180 + AZOBR_RS21465 0.11 -0.9
1,593,180 + AZOBR_RS21465 0.11 +0.7

Or see this region's nucleotide sequence