Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18675

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18670 and AZOBR_RS18675 are separated by 190 nucleotides AZOBR_RS18670: AZOBR_RS18670 - guanosine 5'-monophosphate oxidoreductase, at 958,919 to 959,962 _RS18670 AZOBR_RS18675: AZOBR_RS18675 - UDP-galactopyranose mutase, at 960,153 to 961,271 _RS18675 Position (kb) 960 961 962Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 959.154 kb on - strand, within AZOBR_RS18670at 959.211 kb on - strand, within AZOBR_RS18670at 959.307 kb on - strand, within AZOBR_RS18670at 959.720 kb on + strand, within AZOBR_RS18670at 959.720 kb on + strand, within AZOBR_RS18670at 959.720 kb on + strand, within AZOBR_RS18670at 959.753 kb on + strand, within AZOBR_RS18670at 959.753 kb on + strand, within AZOBR_RS18670at 959.754 kb on - strand, within AZOBR_RS18670at 959.754 kb on - strand, within AZOBR_RS18670at 959.754 kb on - strand, within AZOBR_RS18670at 959.873 kb on + strandat 959.873 kb on + strandat 959.873 kb on + strandat 959.873 kb on + strandat 959.874 kb on - strandat 959.874 kb on - strandat 959.874 kb on - strandat 959.976 kb on - strandat 959.976 kb on - strandat 959.988 kb on + strandat 960.119 kb on + strandat 960.119 kb on + strandat 960.150 kb on + strandat 960.151 kb on - strandat 960.151 kb on - strandat 960.151 kb on - strandat 960.151 kb on - strandat 960.187 kb on - strandat 960.187 kb on - strandat 960.187 kb on - strandat 960.301 kb on - strand, within AZOBR_RS18675at 960.384 kb on + strand, within AZOBR_RS18675at 960.385 kb on - strand, within AZOBR_RS18675at 960.385 kb on - strand, within AZOBR_RS18675at 960.385 kb on - strand, within AZOBR_RS18675at 960.385 kb on - strand, within AZOBR_RS18675at 960.493 kb on - strand, within AZOBR_RS18675at 960.493 kb on - strand, within AZOBR_RS18675at 960.609 kb on + strand, within AZOBR_RS18675at 960.630 kb on + strand, within AZOBR_RS18675at 960.631 kb on - strand, within AZOBR_RS18675at 960.720 kb on + strand, within AZOBR_RS18675at 960.721 kb on - strand, within AZOBR_RS18675at 960.721 kb on - strand, within AZOBR_RS18675at 960.721 kb on - strand, within AZOBR_RS18675at 960.721 kb on - strand, within AZOBR_RS18675at 960.885 kb on + strand, within AZOBR_RS18675at 960.984 kb on + strand, within AZOBR_RS18675at 961.068 kb on + strand, within AZOBR_RS18675at 961.069 kb on - strand, within AZOBR_RS18675at 961.069 kb on - strand, within AZOBR_RS18675at 961.075 kb on - strand, within AZOBR_RS18675at 961.098 kb on + strand, within AZOBR_RS18675at 961.098 kb on + strand, within AZOBR_RS18675at 961.099 kb on - strand, within AZOBR_RS18675at 961.101 kb on + strand, within AZOBR_RS18675at 961.135 kb on - strand, within AZOBR_RS18675at 961.135 kb on - strand, within AZOBR_RS18675at 961.144 kb on - strand, within AZOBR_RS18675at 961.144 kb on - strand, within AZOBR_RS18675at 961.200 kb on + strandat 961.200 kb on + strandat 961.201 kb on - strandat 961.201 kb on - strandat 961.210 kb on - strandat 961.210 kb on - strandat 961.248 kb on + strandat 961.248 kb on + strandat 961.249 kb on - strandat 961.457 kb on + strandat 961.457 kb on + strandat 961.457 kb on + strandat 961.457 kb on + strandat 961.458 kb on - strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.567 kb on - strandat 961.567 kb on - strandat 961.567 kb on - strandat 961.567 kb on - strandat 961.567 kb on - strandat 961.567 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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959,154 - AZOBR_RS18670 0.23 -2.2
959,211 - AZOBR_RS18670 0.28 +0.9
959,307 - AZOBR_RS18670 0.37 +1.1
959,720 + AZOBR_RS18670 0.77 +0.3
959,720 + AZOBR_RS18670 0.77 -1.4
959,720 + AZOBR_RS18670 0.77 -0.5
959,753 + AZOBR_RS18670 0.80 +0.5
959,753 + AZOBR_RS18670 0.80 -2.8
959,754 - AZOBR_RS18670 0.80 +1.0
959,754 - AZOBR_RS18670 0.80 +0.0
959,754 - AZOBR_RS18670 0.80 +1.3
959,873 + -2.6
959,873 + +0.0
959,873 + -1.3
959,873 + -1.2
959,874 - +0.6
959,874 - -3.0
959,874 - +0.4
959,976 - +0.5
959,976 - -0.5
959,988 + +2.3
960,119 + -0.5
960,119 + -1.8
960,150 + -2.1
960,151 - +0.9
960,151 - +1.5
960,151 - -0.1
960,151 - +0.9
960,187 - +1.9
960,187 - +1.1
960,187 - -1.4
960,301 - AZOBR_RS18675 0.13 -0.3
960,384 + AZOBR_RS18675 0.21 +0.5
960,385 - AZOBR_RS18675 0.21 -1.5
960,385 - AZOBR_RS18675 0.21 -1.0
960,385 - AZOBR_RS18675 0.21 -1.2
960,385 - AZOBR_RS18675 0.21 -1.2
960,493 - AZOBR_RS18675 0.30 -3.5
960,493 - AZOBR_RS18675 0.30 +0.4
960,609 + AZOBR_RS18675 0.41 +1.2
960,630 + AZOBR_RS18675 0.43 +1.0
960,631 - AZOBR_RS18675 0.43 -0.0
960,720 + AZOBR_RS18675 0.51 +1.0
960,721 - AZOBR_RS18675 0.51 -0.2
960,721 - AZOBR_RS18675 0.51 -0.8
960,721 - AZOBR_RS18675 0.51 -0.9
960,721 - AZOBR_RS18675 0.51 -0.3
960,885 + AZOBR_RS18675 0.65 +1.1
960,984 + AZOBR_RS18675 0.74 +0.3
961,068 + AZOBR_RS18675 0.82 -0.3
961,069 - AZOBR_RS18675 0.82 -3.3
961,069 - AZOBR_RS18675 0.82 +1.0
961,075 - AZOBR_RS18675 0.82 -0.5
961,098 + AZOBR_RS18675 0.84 +1.3
961,098 + AZOBR_RS18675 0.84 +2.2
961,099 - AZOBR_RS18675 0.85 -0.0
961,101 + AZOBR_RS18675 0.85 -1.6
961,135 - AZOBR_RS18675 0.88 +0.5
961,135 - AZOBR_RS18675 0.88 +1.2
961,144 - AZOBR_RS18675 0.89 +0.5
961,144 - AZOBR_RS18675 0.89 +0.8
961,200 + +0.8
961,200 + +0.2
961,201 - -2.7
961,201 - -0.8
961,210 - -1.8
961,210 - -3.6
961,248 + -1.9
961,248 + +1.0
961,249 - -2.5
961,457 + +0.7
961,457 + +1.4
961,457 + -0.1
961,457 + +1.1
961,458 - -1.6
961,566 + +0.1
961,566 + -0.2
961,566 + -0.0
961,566 + +0.8
961,566 + -1.5
961,566 + -0.7
961,566 + +0.5
961,566 + +0.2
961,567 - -0.6
961,567 - -0.1
961,567 - +0.8
961,567 - -0.1
961,567 - -2.0
961,567 - +1.2

Or see this region's nucleotide sequence